Wall clock time and date at job start Tue Mar 31 2020 12:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46910 * 2 1 4 4 C 1.52995 * 109.47299 * 119.99986 * 2 1 3 5 5 C 1.52998 * 109.47299 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47225 * 300.00259 * 5 4 2 7 7 C 1.52995 * 109.47193 * 59.99676 * 6 5 4 8 8 H 1.09002 * 109.47128 * 60.00132 * 7 6 5 9 9 C 1.53002 * 109.47193 * 179.97438 * 7 6 5 10 10 C 1.50698 * 109.47303 * 295.00533 * 9 7 6 11 11 O 1.21287 * 119.99613 * 359.97438 * 10 9 7 12 12 N 1.34775 * 119.99913 * 180.02562 * 10 9 7 13 13 S 1.65600 * 119.99844 * 179.97438 * 12 10 9 14 14 O 1.42098 * 104.27576 * 308.92411 * 13 12 10 15 15 O 1.42102 * 104.27841 * 181.06538 * 13 12 10 16 16 C 1.81404 * 104.45074 * 64.99364 * 13 12 10 17 17 C 1.53000 * 109.46946 * 180.02562 * 16 13 12 18 18 C 1.50706 * 109.46735 * 180.02562 * 17 16 13 19 19 H 1.07996 * 119.99928 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99611 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00327 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99743 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46725 * 60.00093 * 22 20 18 24 24 H 1.48505 * 109.46988 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47116 * 300.00069 * 22 20 18 26 26 C 1.52998 * 109.47299 * 300.00279 * 7 6 5 27 27 H 1.08998 * 109.47474 * 299.99933 * 1 2 3 28 28 H 1.09006 * 109.47207 * 60.00181 * 1 2 3 29 29 H 1.09002 * 109.47361 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47128 * 60.00147 * 4 2 1 31 31 H 1.08998 * 109.47384 * 300.00151 * 4 2 1 32 32 H 1.08998 * 109.46914 * 179.97438 * 5 4 2 33 33 H 1.09002 * 109.46910 * 60.00013 * 5 4 2 34 34 H 1.09002 * 109.46975 * 299.99714 * 6 5 4 35 35 H 1.08995 * 109.47054 * 180.02562 * 6 5 4 36 36 H 1.08994 * 109.47075 * 174.99689 * 9 7 6 37 37 H 1.09000 * 109.46478 * 55.00299 * 9 7 6 38 38 H 0.96993 * 119.99975 * 359.97438 * 12 10 9 39 39 H 1.09002 * 109.47124 * 60.00022 * 16 13 12 40 40 H 1.09001 * 109.46975 * 300.00144 * 16 13 12 41 41 H 1.09001 * 109.47194 * 299.99756 * 17 16 13 42 42 H 1.08992 * 109.47399 * 59.99928 * 17 16 13 43 43 H 0.97000 * 120.00354 * 180.02562 * 21 20 18 44 44 H 1.09002 * 109.47582 * 179.97438 * 26 7 6 45 45 H 1.09002 * 109.47361 * 299.99699 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5700 -0.7218 1.2489 6 6 4.0795 -1.4433 -0.0004 7 6 3.5695 -0.7221 -1.2496 8 1 3.9331 0.3054 -1.2498 9 6 4.0795 -1.4433 -2.4989 10 6 5.5814 -1.3370 -2.5623 11 8 6.1844 -0.7425 -1.6941 12 7 6.2543 -1.9017 -3.5845 13 16 7.9046 -1.7844 -3.6545 14 8 8.1644 -0.3967 -3.4931 15 8 8.2534 -2.4603 -4.8548 16 6 8.4863 -2.7132 -2.2089 17 6 10.0152 -2.6779 -2.1614 18 6 10.4983 -3.4500 -0.9608 19 1 9.7862 -3.9186 -0.2978 20 6 11.8496 -3.5581 -0.7089 21 7 12.7168 -2.9879 -1.5166 22 14 12.4486 -4.5146 0.7797 23 1 11.9881 -5.9231 0.6810 24 1 13.9325 -4.4815 0.8250 25 1 11.9012 -3.9003 2.0158 26 6 2.0395 -0.7216 -1.2493 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6767 -1.7489 1.2492 31 1 1.6767 -0.2074 2.1392 32 1 3.9333 -1.2352 2.1391 33 1 3.9337 0.3058 1.2486 34 1 3.7158 -2.4709 -0.0002 35 1 5.1694 -1.4441 -0.0004 36 1 3.6448 -0.9839 -3.3865 37 1 3.7911 -2.4936 -2.4552 38 1 5.7720 -2.3769 -4.2790 39 1 8.1484 -3.7470 -2.2813 40 1 8.0844 -2.2623 -1.3016 41 1 10.4174 -3.1286 -3.0688 42 1 10.3526 -1.6441 -2.0889 43 1 13.6675 -3.0643 -1.3396 44 1 1.6761 -0.2074 -2.1390 45 1 1.6757 -1.7491 -1.2491 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776122048.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:43 Heat of formation + Delta-G solvation = -181.870757 kcal Electronic energy + Delta-G solvation = -25170.788032 eV Core-core repulsion = 21505.592661 eV Total energy + Delta-G solvation = -3665.195371 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.45855 -39.44734 -38.27571 -37.22186 -35.96940 -35.56372 -34.31252 -33.19075 -32.63118 -28.59471 -27.64534 -27.11024 -23.84987 -23.36663 -22.70308 -21.31366 -20.71191 -20.53143 -19.29756 -18.67699 -18.29171 -17.37393 -16.68545 -16.57216 -16.45770 -16.09411 -15.89601 -15.26551 -15.14994 -15.02533 -14.58730 -14.49326 -14.09823 -13.83877 -13.77013 -13.37622 -13.25983 -13.18647 -13.07260 -12.94103 -12.85894 -12.65517 -12.57881 -12.31510 -12.23393 -12.15710 -11.98550 -11.81942 -11.75949 -11.62077 -11.47857 -11.23935 -11.10859 -10.81586 -10.67686 -10.66080 -8.28688 -6.43065 -0.98249 1.09934 1.38781 1.42908 1.47721 1.51152 2.35779 2.58017 3.04285 3.05874 3.33467 3.67717 3.83003 3.87125 3.98821 4.04041 4.09422 4.20096 4.33397 4.39625 4.55919 4.60518 4.66783 4.67784 4.80245 4.83218 4.88949 4.92715 5.01083 5.08675 5.17042 5.20662 5.22188 5.26230 5.35437 5.42705 5.48365 5.52844 5.58881 5.64612 5.70362 5.76864 6.02180 6.55347 6.69395 7.26919 8.83630 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015032 B = 0.003295 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.202673 B = 8495.952514 C = 9993.756416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 H 0.057 0.943 4 C -0.109 4.109 5 C -0.120 4.120 6 C -0.127 4.127 7 C -0.077 4.077 8 H 0.058 0.942 9 C -0.130 4.130 10 C 0.525 3.475 11 O -0.529 6.529 12 N -1.037 6.037 13 S 2.599 3.401 14 O -0.982 6.982 15 O -0.974 6.974 16 C -0.578 4.578 17 C 0.023 3.977 18 C -0.542 4.542 19 H 0.074 0.926 20 C -0.003 4.003 21 N -0.933 5.933 22 Si 0.975 3.025 23 H -0.260 1.260 24 H -0.282 1.282 25 H -0.266 1.266 26 C -0.101 4.101 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.046 0.954 34 H 0.073 0.927 35 H 0.051 0.949 36 H 0.136 0.864 37 H 0.140 0.860 38 H 0.451 0.549 39 H 0.151 0.849 40 H 0.133 0.867 41 H 0.014 0.986 42 H 0.003 0.997 43 H 0.268 0.732 44 H 0.077 0.923 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.574 0.593 0.174 28.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 H 0.076 0.924 4 C -0.147 4.147 5 C -0.158 4.158 6 C -0.164 4.164 7 C -0.096 4.096 8 H 0.076 0.924 9 C -0.171 4.171 10 C 0.314 3.686 11 O -0.402 6.402 12 N -0.805 5.805 13 S 2.697 3.303 14 O -0.972 6.972 15 O -0.965 6.965 16 C -0.711 4.711 17 C -0.016 4.016 18 C -0.581 4.581 19 H 0.092 0.908 20 C -0.201 4.201 21 N -0.573 5.573 22 Si 0.798 3.202 23 H -0.184 1.184 24 H -0.207 1.207 25 H -0.191 1.191 26 C -0.138 4.138 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.069 0.931 36 H 0.154 0.846 37 H 0.158 0.842 38 H 0.291 0.709 39 H 0.169 0.831 40 H 0.151 0.849 41 H 0.033 0.967 42 H 0.021 0.979 43 H 0.077 0.923 44 H 0.096 0.904 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -27.519 1.546 0.066 27.562 hybrid contribution 0.882 -0.603 0.760 1.311 sum -26.637 0.943 0.826 26.666 Atomic orbital electron populations 1.21794 0.94208 1.02221 1.01838 1.21135 0.96065 0.99150 0.94989 0.92414 1.21578 0.94236 1.01085 0.97785 1.21497 0.96591 1.00016 0.97706 1.21747 1.00589 0.99593 0.94494 1.20990 0.96504 0.99235 0.92890 0.92383 1.22073 0.86258 1.06583 1.02233 1.21775 0.93628 0.74657 0.78505 1.90891 1.71344 1.39946 1.38054 1.54882 1.28226 1.63331 1.34103 1.05341 0.73599 0.74885 0.76430 1.93542 1.83436 1.32837 1.87340 1.93556 1.81908 1.76770 1.44223 1.30229 1.07443 1.14962 1.18465 1.18810 0.87101 0.97059 0.98596 1.21451 0.92611 1.33726 1.10291 0.90787 1.26126 0.97065 0.96688 1.00268 1.70088 1.02613 1.45107 1.39458 0.85348 0.77061 0.79239 0.78519 1.18403 1.20717 1.19098 1.21612 0.92338 1.01931 0.97955 0.92918 0.92188 0.92060 0.91236 0.92181 0.92551 0.93545 0.90822 0.93061 0.84615 0.84239 0.70864 0.83106 0.84890 0.96737 0.97887 0.92270 0.90425 0.90148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.19 71.98 0.66 -0.69 16 2 C -0.09 -1.17 2.72 -10.80 -0.03 -1.20 16 3 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 4 C -0.11 -1.53 5.20 30.59 0.16 -1.37 16 5 C -0.12 -2.27 5.92 30.59 0.18 -2.09 16 6 C -0.13 -2.46 4.94 30.59 0.15 -2.31 16 7 C -0.08 -1.22 1.84 -10.80 -0.02 -1.24 16 8 H 0.06 1.21 7.95 -2.39 -0.02 1.19 16 9 C -0.13 -1.59 5.18 29.85 0.15 -1.43 16 10 C 0.53 12.28 7.28 87.66 0.64 12.92 16 11 O -0.53 -17.71 12.07 13.33 0.16 -17.54 16 12 N -1.04 -23.30 5.60 -173.53 -0.97 -24.27 16 13 S 2.60 94.28 5.11 -56.49 -0.29 93.99 16 14 O -0.98 -44.35 17.04 -120.72 -2.06 -46.40 16 15 O -0.97 -38.34 18.08 -127.65 -2.31 -40.65 16 16 C -0.58 -23.15 5.82 71.98 0.42 -22.74 16 17 C 0.02 1.26 4.98 29.85 0.15 1.41 16 18 C -0.54 -30.92 9.11 25.60 0.23 -30.68 16 19 H 0.07 3.91 7.74 -2.91 -0.02 3.89 16 20 C 0.00 -0.17 5.46 84.66 0.46 0.30 16 21 N -0.93 -57.69 13.29 21.45 0.28 -57.41 16 22 Si 0.98 44.08 29.54 68.60 2.03 46.10 16 23 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 24 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 26 C -0.10 -1.05 4.48 30.59 0.14 -0.91 16 27 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 29 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.05 1.34 5.95 -2.39 -0.01 1.33 16 36 H 0.14 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.14 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.45 5.62 8.79 -96.75 -0.85 4.77 16 39 H 0.15 4.98 8.14 -2.39 -0.02 4.96 16 40 H 0.13 5.27 7.19 -2.39 -0.02 5.25 16 41 H 0.01 0.81 8.14 -2.39 -0.02 0.80 16 42 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 43 H 0.27 15.50 8.31 -92.71 -0.77 14.72 16 44 H 0.08 0.61 8.14 -2.39 -0.02 0.60 16 45 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -82.47 370.39 0.26 -82.21 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 0.12 Total: 13.99 kcal Atomic # 6 Polarization: -53.32 SS G_CDS: 3.30 Total: -50.02 kcal Atomic # 7 Polarization: -80.99 SS G_CDS: -0.69 Total: -81.68 kcal Atomic # 8 Polarization: -100.40 SS G_CDS: -4.20 Total: -104.60 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: 94.28 SS G_CDS: -0.29 Total: 93.99 kcal Total: -82.47 0.26 -82.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776122048.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.664 kcal (2) G-P(sol) polarization free energy of solvation -82.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds