Wall clock time and date at job start Tue Mar 31 2020 12:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.53002 * 109.46977 * 299.99541 * 4 2 1 6 6 C 1.53000 * 109.47233 * 300.00464 * 5 4 2 7 7 C 1.52996 * 109.47328 * 59.99531 * 6 5 4 8 8 H 1.09000 * 109.46870 * 60.00217 * 7 6 5 9 9 C 1.53000 * 109.47328 * 179.97438 * 7 6 5 10 10 C 1.50705 * 109.47020 * 295.00574 * 9 7 6 11 11 O 1.21281 * 120.00133 * 359.97438 * 10 9 7 12 12 N 1.34779 * 119.99839 * 180.02562 * 10 9 7 13 13 S 1.65599 * 119.99842 * 180.02562 * 12 10 9 14 14 O 1.42103 * 104.27480 * 181.06963 * 13 12 10 15 15 O 1.42111 * 104.27504 * 308.92161 * 13 12 10 16 16 C 1.81395 * 104.45390 * 64.99303 * 13 12 10 17 17 C 1.52999 * 109.47416 * 180.02562 * 16 13 12 18 18 C 1.50695 * 109.47241 * 180.02562 * 17 16 13 19 19 H 1.08000 * 120.00187 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00019 * 180.02562 * 18 17 16 21 21 N 1.31515 * 120.00022 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99979 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46956 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.46999 * 120.00023 * 22 20 18 25 25 H 1.48498 * 109.47038 * 239.99884 * 22 20 18 26 26 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 27 27 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 30 30 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 31 31 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 32 32 H 1.08992 * 109.47063 * 180.02562 * 5 4 2 33 33 H 1.09004 * 109.46733 * 59.99806 * 5 4 2 34 34 H 1.09000 * 109.46968 * 299.99808 * 6 5 4 35 35 H 1.09001 * 109.47194 * 180.02562 * 6 5 4 36 36 H 1.08998 * 109.46990 * 54.99709 * 9 7 6 37 37 H 1.08991 * 109.47625 * 175.00207 * 9 7 6 38 38 H 0.97003 * 119.99884 * 359.97438 * 12 10 9 39 39 H 1.09000 * 109.47556 * 300.00747 * 16 13 12 40 40 H 1.09006 * 109.47060 * 60.00071 * 16 13 12 41 41 H 1.09003 * 109.46743 * 300.00373 * 17 16 13 42 42 H 1.08997 * 109.47123 * 59.99734 * 17 16 13 43 43 H 0.97006 * 119.99853 * 179.97438 * 21 20 18 44 44 H 1.08996 * 109.47747 * 179.97438 * 26 2 1 45 45 H 1.09002 * 109.47103 * 300.00247 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.5301 -2.1637 -1.2494 6 6 2.0401 -2.8850 -0.0001 7 6 1.5301 -2.1638 1.2491 8 1 0.4401 -2.1638 1.2491 9 6 2.0396 -2.8854 2.4983 10 6 1.4382 -4.2658 2.5614 11 8 0.6767 -4.6358 1.6929 12 7 1.7458 -5.0888 3.5834 13 16 1.0855 -6.6059 3.6524 14 8 1.6057 -7.1603 4.8530 15 8 -0.3095 -6.3886 3.4901 16 6 1.7686 -7.4631 2.2070 17 6 1.2262 -8.8929 2.1585 18 6 1.7942 -9.6052 0.9581 19 1 2.4737 -9.0896 0.2958 20 6 1.4455 -10.9149 0.7048 21 7 0.6176 -11.5427 1.5111 22 14 2.1490 -11.7976 -0.7836 23 1 3.0482 -10.8776 -1.5254 24 1 2.9169 -12.9874 -0.3362 25 1 1.0407 -12.2294 -1.6726 26 6 2.0400 -0.7212 1.2491 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.6767 -0.2073 -2.1392 31 1 3.1300 -0.7208 -1.2496 32 1 1.8937 -2.6776 -2.1391 33 1 0.4400 -2.1637 -1.2493 34 1 3.1301 -2.8849 -0.0002 35 1 1.6771 -3.9128 -0.0004 36 1 3.1258 -2.9641 2.4548 37 1 1.7513 -2.3226 3.3861 38 1 2.3546 -4.7928 4.2782 39 1 1.4780 -6.9337 1.2996 40 1 2.8559 -7.4889 2.2802 41 1 1.5165 -9.4226 3.0659 42 1 0.1390 -8.8668 2.0852 43 1 0.3720 -12.4640 1.3327 44 1 3.1300 -0.7217 1.2489 45 1 1.6767 -0.2074 2.1392 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776122050.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:51 Heat of formation + Delta-G solvation = -152.138904 kcal Electronic energy + Delta-G solvation = -25390.261667 eV Core-core repulsion = 21726.355566 eV Total energy + Delta-G solvation = -3663.906101 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.54100 -38.91965 -36.69100 -35.60715 -34.43406 -33.89433 -33.38888 -31.64218 -31.18107 -27.79417 -26.93248 -25.62099 -22.68429 -22.45944 -21.65424 -20.81775 -19.31844 -18.88519 -17.80549 -17.39462 -16.54640 -16.01320 -15.76454 -15.27510 -15.17441 -14.91441 -14.62489 -14.54290 -14.17993 -13.77022 -13.45092 -13.20478 -12.93490 -12.58154 -12.52543 -12.17512 -12.07548 -11.80398 -11.72278 -11.71796 -11.63167 -11.60679 -11.21646 -11.09261 -11.05250 -10.99176 -10.83060 -10.59254 -10.39866 -10.35913 -10.28067 -10.18080 -9.84704 -9.67230 -9.16551 -8.50141 -6.12174 -4.17515 0.51647 2.12053 2.75760 3.26340 3.33456 3.37185 4.00499 4.19532 4.35918 4.37623 4.47071 4.56322 4.67105 4.82676 4.88498 4.95117 5.10586 5.21321 5.23283 5.24249 5.29432 5.33248 5.40260 5.48261 5.50486 5.60085 5.67489 5.72228 5.73352 5.79049 5.87151 6.03847 6.07278 6.07958 6.18181 6.35446 6.40072 6.46110 6.67040 7.28678 7.35211 7.51987 7.81126 8.16886 8.85702 9.47106 10.98989 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014565 B = 0.003461 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.007386 B = 8087.661545 C = 9507.080435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.090 4.090 3 H 0.066 0.934 4 C -0.115 4.115 5 C -0.120 4.120 6 C -0.124 4.124 7 C -0.079 4.079 8 H 0.086 0.914 9 C -0.140 4.140 10 C 0.531 3.469 11 O -0.485 6.485 12 N -1.061 6.061 13 S 2.565 3.435 14 O -0.957 6.957 15 O -0.939 6.939 16 C -0.575 4.575 17 C 0.029 3.971 18 C -0.518 4.518 19 H 0.063 0.937 20 C 0.058 3.942 21 N -0.890 5.890 22 Si 0.901 3.099 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 C -0.109 4.109 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.428 0.572 39 H 0.131 0.869 40 H 0.120 0.880 41 H 0.034 0.966 42 H 0.036 0.964 43 H 0.265 0.735 44 H 0.063 0.937 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.772 24.376 -0.078 25.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.108 4.108 3 H 0.085 0.915 4 C -0.152 4.152 5 C -0.157 4.157 6 C -0.162 4.162 7 C -0.098 4.098 8 H 0.104 0.896 9 C -0.182 4.182 10 C 0.317 3.683 11 O -0.356 6.356 12 N -0.822 5.822 13 S 2.665 3.335 14 O -0.947 6.947 15 O -0.929 6.929 16 C -0.710 4.710 17 C -0.010 4.010 18 C -0.558 4.558 19 H 0.081 0.919 20 C -0.145 4.145 21 N -0.528 5.528 22 Si 0.728 3.272 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.146 4.146 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.262 0.738 39 H 0.149 0.851 40 H 0.139 0.861 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.494 23.701 0.007 24.123 hybrid contribution 1.129 -0.376 -0.782 1.424 sum 5.623 23.325 -0.775 24.006 Atomic orbital electron populations 1.21974 0.95281 1.02596 1.01288 1.21065 0.96047 0.98748 0.94983 0.91529 1.21587 1.00347 0.96081 0.97232 1.21535 1.01303 0.95003 0.97896 1.21752 1.00053 1.00875 0.93485 1.21054 1.01855 0.93863 0.92987 0.89572 1.21917 1.02519 0.92242 1.01488 1.20744 0.79860 0.87927 0.79751 1.90879 1.32363 1.75983 1.36408 1.55457 1.58804 1.34932 1.33035 1.06703 0.75571 0.73295 0.77940 1.93587 1.80901 1.76286 1.43945 1.93597 1.29394 1.82771 1.87148 1.30333 1.11526 1.12437 1.16681 1.18991 0.97399 0.84784 0.99823 1.21013 1.28338 0.96955 1.09467 0.91921 1.25068 0.95016 0.97470 0.96943 1.69967 1.33702 1.11944 1.37225 0.86395 0.78926 0.79533 0.82327 1.19616 1.20798 1.20755 1.21614 1.00538 0.94768 0.97700 0.92936 0.91554 0.92985 0.92324 0.92192 0.92116 0.91504 0.92455 0.89806 0.87962 0.88064 0.73752 0.85083 0.86117 0.94796 0.94591 0.92566 0.91847 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 8.50 37.16 0.32 -0.86 16 2 C -0.09 -0.65 3.19 -90.62 -0.29 -0.93 16 3 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 4 C -0.11 -0.89 5.45 -26.73 -0.15 -1.03 16 5 C -0.12 -1.13 5.65 -26.73 -0.15 -1.28 16 6 C -0.12 -1.26 4.94 -26.73 -0.13 -1.39 16 7 C -0.08 -0.70 1.56 -90.62 -0.14 -0.84 16 8 H 0.09 0.90 6.24 -51.93 -0.32 0.58 16 9 C -0.14 -1.12 5.18 -27.88 -0.14 -1.26 16 10 C 0.53 6.67 7.28 -10.98 -0.08 6.59 16 11 O -0.49 -8.03 12.07 -11.60 -0.14 -8.17 16 12 N -1.06 -13.02 5.60 31.22 0.17 -12.84 16 13 S 2.56 46.53 5.11 -107.50 -0.55 45.98 16 14 O -0.96 -19.02 18.08 -57.54 -1.04 -20.06 16 15 O -0.94 -20.63 17.04 -64.80 -1.10 -21.73 16 16 C -0.58 -11.40 5.82 37.16 0.22 -11.18 16 17 C 0.03 0.76 4.98 -27.89 -0.14 0.62 16 18 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 19 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -26.66 13.29 55.43 0.74 -25.93 16 22 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 C -0.11 -0.75 4.73 -26.73 -0.13 -0.87 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.59 4.81 -51.93 -0.25 0.34 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.67 6.43 -51.93 -0.33 0.34 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 1.07 5.95 -51.93 -0.31 0.76 16 36 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.43 3.41 8.79 -34.47 -0.30 3.11 16 39 H 0.13 2.54 7.19 -51.92 -0.37 2.17 16 40 H 0.12 2.06 8.14 -51.92 -0.42 1.63 16 41 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 363.36 15.07 5.48 5.48 Total: -1.00 -36.13 363.36 -10.05 -46.17 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -7.35 Total: 0.44 kcal Atomic # 6 Polarization: -24.50 SS G_CDS: -1.23 Total: -25.73 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.91 Total: -38.77 kcal Atomic # 8 Polarization: -47.67 SS G_CDS: -2.28 Total: -49.96 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 46.53 SS G_CDS: -0.55 Total: 45.98 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.13 -10.05 -46.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776122050.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.964 kcal (2) G-P(sol) polarization free energy of solvation -36.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds