Wall clock time and date at job start Tue Mar 31 2020 11:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50705 * 119.99865 * 2 1 4 4 N 1.46501 * 109.47032 * 124.99778 * 3 2 1 5 5 C 1.34780 * 119.99792 * 180.02562 * 4 3 2 6 6 O 1.21603 * 120.00142 * 359.97438 * 5 4 3 7 7 C 1.47432 * 120.00036 * 179.97438 * 5 4 3 8 8 C 1.39732 * 120.20548 * 354.11248 * 7 5 4 9 9 C 1.37747 * 119.92395 * 179.97438 * 8 7 5 10 10 C 1.38608 * 120.35704 * 359.97438 * 9 8 7 11 11 C 1.37962 * 120.42058 * 0.02562 * 10 9 8 12 12 C 1.38956 * 120.05915 * 359.97438 * 11 10 9 13 13 N 1.38879 * 120.17046 * 179.97438 * 12 11 10 14 14 C 1.46495 * 120.00025 * 5.56074 * 13 12 11 15 15 C 1.50703 * 109.47186 * 179.97438 * 14 13 12 16 16 O 1.21285 * 119.99543 * 0.02562 * 15 14 13 17 17 N 1.34772 * 120.00255 * 180.02562 * 15 14 13 18 18 C 1.46498 * 119.99982 * 180.02562 * 17 15 14 19 19 C 1.50703 * 109.47082 * 179.97438 * 18 17 15 20 20 H 1.07998 * 120.00102 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00160 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00137 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00194 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46734 * 59.99861 * 23 21 19 25 25 H 1.48493 * 109.47091 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47155 * 300.00080 * 23 21 19 27 27 H 1.07998 * 119.99595 * 180.02562 * 1 2 3 28 28 H 1.08003 * 120.00087 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.00327 * 179.97438 * 2 1 3 30 30 H 1.08996 * 109.46929 * 4.99583 * 3 2 1 31 31 H 1.08999 * 109.47257 * 244.99523 * 3 2 1 32 32 H 0.96994 * 120.00112 * 359.97438 * 4 3 2 33 33 H 1.08001 * 120.04030 * 359.97270 * 8 7 5 34 34 H 1.08003 * 119.82108 * 180.02562 * 9 8 7 35 35 H 1.07993 * 119.79476 * 180.02562 * 10 9 8 36 36 H 1.07997 * 119.96847 * 179.72142 * 11 10 9 37 37 H 0.96999 * 119.99446 * 185.56032 * 13 12 11 38 38 H 1.08996 * 109.47525 * 299.99844 * 14 13 12 39 39 H 1.08998 * 109.47256 * 60.00378 * 14 13 12 40 40 H 0.97000 * 120.00137 * 359.97438 * 17 15 14 41 41 H 1.08997 * 109.47406 * 299.99925 * 18 17 15 42 42 H 1.09000 * 109.47345 * 60.00087 * 18 17 15 43 43 H 0.97000 * 120.00728 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1315 5 6 3.7782 2.4092 1.3335 6 8 3.7142 3.3586 0.5763 7 6 4.7139 2.4365 2.4725 8 6 4.7051 1.4044 3.4144 9 6 5.5822 1.4355 4.4761 10 6 6.4758 2.4858 4.6159 11 6 6.4971 3.5123 3.6944 12 6 5.6199 3.4985 2.6168 13 7 5.6389 4.5309 1.6880 14 6 6.6639 5.5741 1.7733 15 6 6.4643 6.5669 0.6573 16 8 5.5549 6.4180 -0.1313 17 7 7.2962 7.6202 0.5355 18 6 7.1017 8.5857 -0.5491 19 6 8.1562 9.6587 -0.4615 20 1 8.8969 9.6252 0.3238 21 6 8.1755 10.6833 -1.3838 22 7 7.2739 10.7240 -2.3404 23 14 9.4822 12.0139 -1.2749 24 1 10.8277 11.3972 -1.3955 25 1 9.2859 12.9917 -2.3750 26 1 9.3721 12.7099 0.0322 27 1 -0.5399 -0.9353 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9352 0.0004 30 1 1.3585 2.1316 0.0895 31 1 2.6213 1.4027 -0.9313 32 1 3.0445 0.5749 1.7356 33 1 4.0112 0.5833 3.3103 34 1 5.5742 0.6367 5.2029 35 1 7.1598 2.5008 5.4515 36 1 7.1933 4.3294 3.8129 37 1 4.9734 4.5612 0.9830 38 1 6.5838 6.0847 2.7329 39 1 7.6514 5.1213 1.6839 40 1 8.0232 7.7396 1.1665 41 1 7.1813 8.0750 -1.5087 42 1 6.1145 9.0389 -0.4595 43 1 7.2871 11.4450 -2.9892 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776722443.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:38 Heat of formation + Delta-G solvation = -21.643820 kcal Electronic energy + Delta-G solvation = -25094.354597 eV Core-core repulsion = 21332.955987 eV Total energy + Delta-G solvation = -3761.398610 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.54946 -39.04821 -38.36226 -36.16527 -35.23216 -34.19104 -33.12557 -32.38008 -31.22605 -30.04043 -27.87908 -26.68113 -25.74740 -23.70034 -22.63666 -21.51582 -20.93845 -20.37423 -19.68840 -18.15177 -17.54661 -16.65705 -16.52429 -15.84455 -15.75242 -15.41202 -15.38650 -15.16012 -14.90911 -14.54014 -14.15882 -14.08628 -13.74668 -13.46636 -13.35101 -13.22311 -12.75650 -12.57439 -12.36789 -12.10132 -11.95853 -11.66138 -11.54968 -11.33408 -11.01525 -10.88269 -10.34011 -10.24411 -10.18167 -9.72600 -9.43559 -9.30443 -9.18155 -9.05341 -8.75801 -7.95182 -7.44107 -6.17381 -4.25016 0.85696 1.51892 1.69672 2.84436 3.17402 3.24219 3.25144 3.28866 3.30743 3.38055 3.85946 4.13003 4.36174 4.40108 4.64100 4.66626 4.71644 4.91204 5.18422 5.20850 5.23293 5.26370 5.30042 5.41707 5.44781 5.45870 5.50431 5.57751 5.75901 6.01397 6.12092 6.14578 6.20947 6.34129 6.41923 6.67336 7.18249 7.28761 7.34577 7.40731 7.49260 7.63304 7.89925 7.95185 8.34612 8.55237 8.73493 9.00769 9.41246 10.92730 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015362 B = 0.002495 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.290095 B =11219.901242 C =12982.869189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.176 4.176 3 C 0.145 3.855 4 N -0.727 5.727 5 C 0.565 3.435 6 O -0.533 6.533 7 C -0.234 4.234 8 C -0.033 4.033 9 C -0.201 4.201 10 C -0.039 4.039 11 C -0.216 4.216 12 C 0.285 3.715 13 N -0.706 5.706 14 C 0.091 3.909 15 C 0.490 3.510 16 O -0.542 6.542 17 N -0.707 5.707 18 C 0.250 3.750 19 C -0.545 4.545 20 H 0.063 0.937 21 C 0.063 3.937 22 N -0.885 5.885 23 Si 0.905 3.095 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.275 1.275 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.115 0.885 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.400 0.600 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.124 0.876 36 H 0.129 0.871 37 H 0.432 0.568 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.392 0.608 41 H 0.028 0.972 42 H 0.028 0.972 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.311 -23.678 13.946 28.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.194 4.194 3 C 0.022 3.978 4 N -0.379 5.379 5 C 0.355 3.645 6 O -0.411 6.411 7 C -0.243 4.243 8 C -0.052 4.052 9 C -0.222 4.222 10 C -0.058 4.058 11 C -0.239 4.239 12 C 0.171 3.829 13 N -0.344 5.344 14 C -0.037 4.037 15 C 0.274 3.726 16 O -0.420 6.420 17 N -0.356 5.356 18 C 0.129 3.871 19 C -0.583 4.583 20 H 0.081 0.919 21 C -0.140 4.140 22 N -0.522 5.522 23 Si 0.732 3.268 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.200 1.200 27 H 0.121 0.879 28 H 0.119 0.881 29 H 0.133 0.867 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.235 0.765 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.142 0.858 36 H 0.147 0.853 37 H 0.285 0.715 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.225 0.775 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.998 -22.752 12.513 26.892 hybrid contribution 0.872 0.424 0.360 1.034 sum -6.126 -22.327 12.872 26.490 Atomic orbital electron populations 1.23994 0.95791 1.02458 0.98184 1.23012 0.96241 0.98092 1.02054 1.20431 0.91885 0.95535 0.89957 1.45761 1.41344 1.19899 1.30929 1.18237 0.79720 0.82138 0.84371 1.90560 1.68121 1.34923 1.47512 1.19157 1.04794 0.99455 1.00851 1.20939 0.96372 0.95316 0.92605 1.20720 1.00051 1.00900 1.00522 1.21052 0.95813 0.92241 0.96728 1.20740 1.04020 1.02472 0.96622 1.17811 0.91039 0.86046 0.87994 1.45583 1.33849 1.22688 1.32310 1.21257 0.93226 0.90169 0.99072 1.20298 0.83353 0.82858 0.86120 1.90716 1.32266 1.75071 1.43930 1.46388 1.30888 1.25365 1.32985 1.19144 0.97510 0.85851 0.84563 1.21173 1.14108 1.08930 1.14132 0.91851 1.24964 0.96178 0.98024 0.94884 1.69965 1.34150 1.32809 1.15273 0.86449 0.81494 0.81018 0.77796 1.20047 1.21063 1.20041 0.87900 0.88066 0.86710 0.90837 0.90370 0.76518 0.86223 0.86098 0.85841 0.85322 0.71549 0.89369 0.89362 0.77506 0.95385 0.95391 0.92335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.00 14.32 29.01 0.42 -0.58 16 2 C -0.18 -1.18 9.63 -36.02 -0.35 -1.52 16 3 C 0.14 1.39 6.11 -5.19 -0.03 1.36 16 4 N -0.73 -7.29 5.50 -62.56 -0.34 -7.63 16 5 C 0.57 7.97 7.75 -12.51 -0.10 7.87 16 6 O -0.53 -9.91 13.65 5.27 0.07 -9.84 16 7 C -0.23 -2.99 5.89 -104.80 -0.62 -3.60 16 8 C -0.03 -0.31 9.52 -39.20 -0.37 -0.68 16 9 C -0.20 -1.70 10.02 -39.62 -0.40 -2.10 16 10 C -0.04 -0.35 10.03 -39.55 -0.40 -0.75 16 11 C -0.22 -2.40 9.30 -39.42 -0.37 -2.76 16 12 C 0.28 3.97 6.65 -83.61 -0.56 3.42 16 13 N -0.71 -11.74 5.56 -59.62 -0.33 -12.07 16 14 C 0.09 1.38 5.42 -5.19 -0.03 1.35 16 15 C 0.49 10.08 7.90 -10.99 -0.09 9.99 16 16 O -0.54 -13.73 15.67 5.55 0.09 -13.65 16 17 N -0.71 -14.88 5.55 -61.47 -0.34 -15.23 16 18 C 0.25 6.69 5.43 -5.19 -0.03 6.67 16 19 C -0.55 -14.81 9.28 -34.44 -0.32 -15.13 16 20 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 21 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 22 N -0.88 -26.30 13.29 55.43 0.74 -25.56 16 23 Si 0.91 20.89 29.54 -169.99 -5.02 15.87 16 24 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 27 H 0.10 0.46 8.06 -52.49 -0.42 0.04 16 28 H 0.10 0.62 7.84 -52.48 -0.41 0.21 16 29 H 0.11 0.61 8.06 -52.49 -0.42 0.19 16 30 H 0.07 0.78 7.79 -51.93 -0.40 0.38 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.40 2.76 6.53 -40.82 -0.27 2.49 16 33 H 0.12 0.72 6.45 -52.49 -0.34 0.39 16 34 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 35 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 36 H 0.13 1.23 6.72 -52.49 -0.35 0.88 16 37 H 0.43 8.58 3.95 -40.94 -0.16 8.42 16 38 H 0.09 1.09 7.73 -51.93 -0.40 0.69 16 39 H 0.09 1.11 8.13 -51.93 -0.42 0.68 16 40 H 0.39 6.84 8.32 -40.82 -0.34 6.50 16 41 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 368.77 15.07 5.56 5.56 Total: -1.00 -35.53 368.77 -8.50 -44.03 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -5.59 Total: 13.32 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: -3.33 Total: 5.19 kcal Atomic # 7 Polarization: -60.21 SS G_CDS: -0.28 Total: -60.49 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: 0.16 Total: -23.48 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.53 -8.50 -44.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776722443.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.387 kcal (2) G-P(sol) polarization free energy of solvation -35.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds