Wall clock time and date at job start Tue Mar 31 2020 11:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50705 * 119.99865 * 2 1 4 4 N 1.46501 * 109.47032 * 124.99778 * 3 2 1 5 5 C 1.34780 * 119.99792 * 180.02562 * 4 3 2 6 6 O 1.21603 * 120.00142 * 359.97438 * 5 4 3 7 7 C 1.47432 * 120.00036 * 179.97438 * 5 4 3 8 8 C 1.39732 * 120.20548 * 354.11248 * 7 5 4 9 9 C 1.37747 * 119.92395 * 179.97438 * 8 7 5 10 10 C 1.38608 * 120.35704 * 359.97438 * 9 8 7 11 11 C 1.37962 * 120.42058 * 0.02562 * 10 9 8 12 12 C 1.38956 * 120.05915 * 359.97438 * 11 10 9 13 13 N 1.38879 * 120.17046 * 179.97438 * 12 11 10 14 14 C 1.46495 * 120.00025 * 5.56074 * 13 12 11 15 15 C 1.50703 * 109.47186 * 179.97438 * 14 13 12 16 16 O 1.21285 * 119.99543 * 0.02562 * 15 14 13 17 17 N 1.34772 * 120.00255 * 180.02562 * 15 14 13 18 18 C 1.46498 * 119.99982 * 180.02562 * 17 15 14 19 19 C 1.50703 * 109.47082 * 179.97438 * 18 17 15 20 20 H 1.07998 * 120.00102 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00160 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00137 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00194 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46734 * 59.99861 * 23 21 19 25 25 H 1.48493 * 109.47091 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47155 * 300.00080 * 23 21 19 27 27 H 1.07998 * 119.99595 * 180.02562 * 1 2 3 28 28 H 1.08003 * 120.00087 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.00327 * 179.97438 * 2 1 3 30 30 H 1.08996 * 109.46929 * 4.99583 * 3 2 1 31 31 H 1.08999 * 109.47257 * 244.99523 * 3 2 1 32 32 H 0.96994 * 120.00112 * 359.97438 * 4 3 2 33 33 H 1.08001 * 120.04030 * 359.97270 * 8 7 5 34 34 H 1.08003 * 119.82108 * 180.02562 * 9 8 7 35 35 H 1.07993 * 119.79476 * 180.02562 * 10 9 8 36 36 H 1.07997 * 119.96847 * 179.72142 * 11 10 9 37 37 H 0.96999 * 119.99446 * 185.56032 * 13 12 11 38 38 H 1.08996 * 109.47525 * 299.99844 * 14 13 12 39 39 H 1.08998 * 109.47256 * 60.00378 * 14 13 12 40 40 H 0.97000 * 120.00137 * 359.97438 * 17 15 14 41 41 H 1.08997 * 109.47406 * 299.99925 * 18 17 15 42 42 H 1.09000 * 109.47345 * 60.00087 * 18 17 15 43 43 H 0.97000 * 120.00728 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1315 5 6 3.7782 2.4092 1.3335 6 8 3.7142 3.3586 0.5763 7 6 4.7139 2.4365 2.4725 8 6 4.7051 1.4044 3.4144 9 6 5.5822 1.4355 4.4761 10 6 6.4758 2.4858 4.6159 11 6 6.4971 3.5123 3.6944 12 6 5.6199 3.4985 2.6168 13 7 5.6389 4.5309 1.6880 14 6 6.6639 5.5741 1.7733 15 6 6.4643 6.5669 0.6573 16 8 5.5549 6.4180 -0.1313 17 7 7.2962 7.6202 0.5355 18 6 7.1017 8.5857 -0.5491 19 6 8.1562 9.6587 -0.4615 20 1 8.8969 9.6252 0.3238 21 6 8.1755 10.6833 -1.3838 22 7 7.2739 10.7240 -2.3404 23 14 9.4822 12.0139 -1.2749 24 1 10.8277 11.3972 -1.3955 25 1 9.2859 12.9917 -2.3750 26 1 9.3721 12.7099 0.0322 27 1 -0.5399 -0.9353 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9352 0.0004 30 1 1.3585 2.1316 0.0895 31 1 2.6213 1.4027 -0.9313 32 1 3.0445 0.5749 1.7356 33 1 4.0112 0.5833 3.3103 34 1 5.5742 0.6367 5.2029 35 1 7.1598 2.5008 5.4515 36 1 7.1933 4.3294 3.8129 37 1 4.9734 4.5612 0.9830 38 1 6.5838 6.0847 2.7329 39 1 7.6514 5.1213 1.6839 40 1 8.0232 7.7396 1.1665 41 1 7.1813 8.0750 -1.5087 42 1 6.1145 9.0389 -0.4595 43 1 7.2871 11.4450 -2.9892 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776722443.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:38 Heat of formation + Delta-G solvation = -49.266173 kcal Electronic energy + Delta-G solvation = -25095.552392 eV Core-core repulsion = 21332.955987 eV Total energy + Delta-G solvation = -3762.596405 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.54815 -40.64901 -39.34922 -37.08038 -36.42513 -35.97819 -34.42905 -33.92419 -32.02250 -31.14058 -29.54264 -27.78531 -26.91328 -24.72212 -24.37748 -22.47786 -22.01302 -21.36099 -20.96150 -19.28964 -18.78905 -18.09544 -17.49227 -17.29116 -16.91917 -16.81483 -16.64701 -16.54434 -16.09647 -15.67498 -15.30139 -15.07083 -14.94231 -14.66161 -14.39702 -14.20066 -14.08942 -13.94283 -13.87576 -13.47000 -13.16857 -12.98780 -12.83928 -12.68754 -12.26319 -12.13045 -12.02648 -11.54971 -11.15612 -11.04939 -10.94028 -10.82457 -10.57053 -10.20303 -9.94267 -9.82655 -8.40992 -8.31158 -6.48867 0.03209 0.72604 1.14412 1.42072 1.46858 1.55063 1.58487 1.88870 2.07092 2.34414 2.38299 2.75171 3.03346 3.03661 3.76197 3.78734 3.86254 3.94692 4.11252 4.21201 4.25981 4.32770 4.50318 4.53456 4.57712 4.68440 4.73739 4.96607 5.03685 5.06292 5.17687 5.19623 5.34666 5.41256 5.50001 5.60110 5.61393 5.68830 5.75176 5.79690 5.95222 6.30353 6.52874 6.60770 6.70728 6.81998 7.19275 7.27856 7.37497 8.81053 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015362 B = 0.002495 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.290095 B =11219.901242 C =12982.869189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.179 4.179 3 C 0.142 3.858 4 N -0.708 5.708 5 C 0.554 3.446 6 O -0.590 6.590 7 C -0.255 4.255 8 C -0.030 4.030 9 C -0.191 4.191 10 C -0.034 4.034 11 C -0.223 4.223 12 C 0.252 3.748 13 N -0.735 5.735 14 C 0.109 3.891 15 C 0.486 3.514 16 O -0.597 6.597 17 N -0.698 5.698 18 C 0.266 3.734 19 C -0.557 4.557 20 H 0.089 0.911 21 C 0.001 3.999 22 N -0.933 5.933 23 Si 0.989 3.011 24 H -0.260 1.260 25 H -0.287 1.287 26 H -0.260 1.260 27 H 0.127 0.873 28 H 0.094 0.906 29 H 0.136 0.864 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.416 0.584 33 H 0.151 0.849 34 H 0.156 0.844 35 H 0.158 0.842 36 H 0.143 0.857 37 H 0.414 0.586 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.414 0.586 41 H -0.014 1.014 42 H -0.014 1.014 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.436 -25.789 17.618 31.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.197 4.197 3 C 0.019 3.981 4 N -0.360 5.360 5 C 0.346 3.654 6 O -0.472 6.472 7 C -0.263 4.263 8 C -0.049 4.049 9 C -0.211 4.211 10 C -0.052 4.052 11 C -0.245 4.245 12 C 0.142 3.858 13 N -0.374 5.374 14 C -0.019 4.019 15 C 0.273 3.727 16 O -0.478 6.478 17 N -0.348 5.348 18 C 0.143 3.857 19 C -0.594 4.594 20 H 0.107 0.893 21 C -0.199 4.199 22 N -0.571 5.571 23 Si 0.812 3.188 24 H -0.185 1.185 25 H -0.212 1.212 26 H -0.184 1.184 27 H 0.145 0.855 28 H 0.113 0.887 29 H 0.154 0.846 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.255 0.745 33 H 0.169 0.831 34 H 0.174 0.826 35 H 0.175 0.825 36 H 0.161 0.839 37 H 0.263 0.737 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.250 0.750 41 H 0.004 0.996 42 H 0.004 0.996 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.094 -24.960 16.294 30.239 hybrid contribution 0.183 0.920 -0.716 1.180 sum -4.910 -24.040 15.578 29.064 Atomic orbital electron populations 1.24191 0.95580 1.03297 0.96468 1.22914 0.96349 0.96988 1.03492 1.20427 0.91508 0.97052 0.89086 1.45645 1.40095 1.19364 1.30903 1.18722 0.80179 0.82109 0.84434 1.90540 1.69924 1.37131 1.49621 1.19335 1.04849 1.00761 1.01399 1.21298 0.96981 0.94898 0.91734 1.21215 0.98467 1.01257 1.00168 1.21512 0.95858 0.91190 0.96686 1.21003 1.03666 1.03783 0.96086 1.18226 0.92816 0.86002 0.88714 1.45633 1.34237 1.24238 1.33273 1.21246 0.94488 0.88847 0.97313 1.21348 0.81756 0.82969 0.86664 1.90694 1.34513 1.76263 1.46373 1.46056 1.31931 1.24739 1.32116 1.18575 0.95812 0.86647 0.84674 1.21590 1.14280 1.08741 1.14810 0.89309 1.26146 0.98658 1.00918 0.94169 1.70148 1.36590 1.33971 1.16432 0.85144 0.78298 0.77219 0.78170 1.18466 1.21239 1.18445 0.85541 0.88732 0.84605 0.92594 0.92308 0.74492 0.83113 0.82593 0.82489 0.83939 0.73697 0.86127 0.86277 0.74984 0.99611 0.99591 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 14.32 67.78 0.97 -0.72 16 2 C -0.18 -2.24 9.63 25.65 0.25 -2.00 16 3 C 0.14 2.93 6.11 85.63 0.52 3.46 16 4 N -0.71 -14.46 5.50 -470.09 -2.58 -17.04 16 5 C 0.55 16.49 7.75 86.66 0.67 17.17 16 6 O -0.59 -24.12 13.65 -4.04 -0.06 -24.17 16 7 C -0.25 -6.44 5.89 -19.98 -0.12 -6.56 16 8 C -0.03 -0.47 9.52 22.51 0.21 -0.26 16 9 C -0.19 -2.37 10.02 22.24 0.22 -2.14 16 10 C -0.03 -0.46 10.03 22.29 0.22 -0.24 16 11 C -0.22 -4.39 9.30 22.38 0.21 -4.18 16 12 C 0.25 6.98 6.65 38.71 0.26 7.24 16 13 N -0.73 -25.39 5.56 -342.55 -1.90 -27.29 16 14 C 0.11 3.24 5.42 85.64 0.46 3.71 16 15 C 0.49 20.90 7.90 87.66 0.69 21.59 16 16 O -0.60 -32.76 15.67 -3.04 -0.05 -32.81 16 17 N -0.70 -30.23 5.55 -466.79 -2.59 -32.82 16 18 C 0.27 15.07 5.43 85.63 0.46 15.54 16 19 C -0.56 -30.65 9.28 25.60 0.24 -30.41 16 20 H 0.09 4.33 7.60 -2.91 -0.02 4.31 16 21 C 0.00 0.03 5.46 84.65 0.46 0.49 16 22 N -0.93 -57.61 13.29 21.45 0.28 -57.32 16 23 Si 0.99 42.69 29.54 68.60 2.03 44.72 16 24 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 25 H -0.29 -12.35 7.11 99.48 0.71 -11.65 16 26 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 27 H 0.13 0.80 8.06 -2.91 -0.02 0.78 16 28 H 0.09 1.14 7.84 -2.91 -0.02 1.11 16 29 H 0.14 1.15 8.06 -2.91 -0.02 1.12 16 30 H 0.06 1.33 7.79 -2.39 -0.02 1.31 16 31 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.42 5.18 6.53 -92.71 -0.61 4.58 16 33 H 0.15 1.26 6.45 -2.91 -0.02 1.25 16 34 H 0.16 0.90 8.06 -2.91 -0.02 0.88 16 35 H 0.16 1.11 8.06 -2.91 -0.02 1.08 16 36 H 0.14 2.28 6.72 -2.91 -0.02 2.26 16 37 H 0.41 17.83 3.95 -94.62 -0.37 17.45 16 38 H 0.12 2.78 7.73 -2.39 -0.02 2.76 16 39 H 0.12 2.78 8.13 -2.39 -0.02 2.76 16 40 H 0.41 14.12 8.32 -92.71 -0.77 13.35 16 41 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 42 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 43 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -86.25 368.77 0.18 -86.07 By element: Atomic # 1 Polarization: 38.68 SS G_CDS: -0.69 Total: 37.99 kcal Atomic # 6 Polarization: 16.94 SS G_CDS: 5.74 Total: 22.68 kcal Atomic # 7 Polarization: -127.69 SS G_CDS: -6.79 Total: -134.48 kcal Atomic # 8 Polarization: -56.88 SS G_CDS: -0.10 Total: -56.99 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -86.25 0.18 -86.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776722443.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.808 kcal (2) G-P(sol) polarization free energy of solvation -86.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds