Wall clock time and date at job start Tue Mar 31 2020 11:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53002 * 109.47500 * 2 1 4 4 H 1.08995 * 109.47115 * 305.00215 * 3 2 1 5 5 C 1.50694 * 109.47158 * 184.99804 * 3 2 1 6 6 H 1.07999 * 120.00191 * 240.00301 * 5 3 2 7 7 C 1.37885 * 119.99910 * 60.00588 * 5 3 2 8 8 N 1.31516 * 119.99882 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99923 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47346 * 0.02562 * 9 7 5 11 11 H 1.48511 * 109.46770 * 119.99846 * 9 7 5 12 12 H 1.48496 * 109.47278 * 239.99629 * 9 7 5 13 13 O 1.45204 * 109.46876 * 65.00200 * 3 2 1 14 14 C 1.34721 * 116.99756 * 270.00134 * 13 3 2 15 15 O 1.21466 * 120.00319 * 0.02562 * 14 13 3 16 16 C 1.47746 * 119.99972 * 180.02562 * 14 13 3 17 17 C 1.39389 * 121.09409 * 322.08390 * 16 14 13 18 18 C 1.38655 * 119.35581 * 179.76652 * 17 16 14 19 19 C 1.50694 * 119.16176 * 180.23541 * 18 17 16 20 20 N 1.31477 * 121.67785 * 0.50064 * 18 17 16 21 21 C 1.32504 * 121.98953 * 359.75976 * 20 18 17 22 22 C 1.40973 * 120.22013 * 359.97438 * 21 20 18 23 23 C 1.41085 * 107.13694 * 180.02562 * 22 21 20 24 24 C 1.50704 * 125.70802 * 180.02562 * 23 22 21 25 25 N 1.30257 * 108.58816 * 359.97438 * 23 22 21 26 26 N 1.37085 * 133.45196 * 179.97438 * 21 20 18 27 27 C 1.46508 * 125.90207 * 359.96298 * 26 21 20 28 28 H 1.09008 * 109.47536 * 300.00089 * 1 2 3 29 29 H 1.08994 * 109.47879 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47380 * 59.99869 * 1 2 3 31 31 H 1.09004 * 109.46953 * 120.00449 * 2 1 3 32 32 H 1.08999 * 109.46779 * 239.99995 * 2 1 3 33 33 H 0.96999 * 119.99867 * 180.02562 * 8 7 5 34 34 H 1.07997 * 120.32255 * 359.97438 * 17 16 14 35 35 H 1.08996 * 109.47384 * 270.25844 * 19 18 17 36 36 H 1.09002 * 109.47119 * 30.26261 * 19 18 17 37 37 H 1.09007 * 109.47126 * 150.25786 * 19 18 17 38 38 H 1.09000 * 109.47412 * 83.99648 * 24 23 22 39 39 H 1.08995 * 109.47153 * 204.00109 * 24 23 22 40 40 H 1.09001 * 109.46368 * 323.99905 * 24 23 22 41 41 H 1.08997 * 109.47273 * 270.01390 * 27 26 21 42 42 H 1.08991 * 109.47262 * 30.01884 * 27 26 21 43 43 H 1.09009 * 109.46830 * 150.01777 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5418 1.4442 -0.1238 6 1 4.1472 1.8887 0.6524 7 6 4.1432 0.8783 -1.2280 8 7 3.4061 0.3366 -2.1730 9 14 6.0049 0.8811 -1.3818 10 1 6.5987 1.5459 -0.1941 11 1 6.4969 -0.5178 -1.4630 12 1 6.3990 1.6165 -2.6102 13 8 1.6559 2.0916 1.2408 14 6 0.4684 2.7277 1.2561 15 8 -0.2273 2.7394 0.2605 16 6 0.0123 3.4112 2.4840 17 6 0.2527 2.8648 3.7436 18 6 -0.1871 3.5394 4.8723 19 6 0.0798 2.9474 6.2322 20 7 -0.8358 4.6798 4.7862 21 6 -1.1012 5.2500 3.6200 22 6 -0.6866 4.6374 2.4199 23 6 -1.1073 5.4698 1.3613 24 6 -0.8810 5.2094 -0.1057 25 7 -1.7250 6.5006 1.8639 26 7 -1.7448 6.4058 3.2604 27 6 -2.3492 7.3740 4.1789 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.8932 -0.5139 0.8900 32 1 1.8932 -0.5138 -0.8900 33 1 3.8292 -0.0618 -2.9496 34 1 0.7795 1.9270 3.8396 35 1 -0.7465 2.2944 6.5128 36 1 1.0045 2.3709 6.2023 37 1 0.1748 3.7487 6.9650 38 1 -1.6614 4.5480 -0.4820 39 1 -0.9101 6.1527 -0.6509 40 1 0.0924 4.7390 -0.2452 41 1 -3.3895 7.1033 4.3593 42 1 -1.8036 7.3692 5.1225 43 1 -2.3041 8.3700 3.7382 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787086495.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:01 Heat of formation + Delta-G solvation = 11.023858 kcal Electronic energy + Delta-G solvation = -26999.114318 eV Core-core repulsion = 23239.132285 eV Total energy + Delta-G solvation = -3759.982033 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.87133 -39.64028 -38.41430 -36.01898 -34.33384 -33.60378 -32.24366 -31.84074 -31.32450 -29.42255 -27.69765 -27.32781 -25.67139 -24.64578 -23.11403 -22.32268 -21.19892 -19.98301 -19.13988 -17.65302 -17.20800 -17.19237 -16.63082 -16.07885 -15.78626 -15.20987 -14.66067 -14.39840 -14.17625 -14.13055 -13.52581 -13.39294 -13.21122 -12.89547 -12.82373 -12.65145 -12.54119 -12.44860 -12.22609 -11.97200 -11.57449 -11.43146 -11.41503 -11.18138 -11.01979 -10.85165 -10.70194 -10.37365 -10.31868 -10.13316 -9.80773 -9.50274 -9.38774 -8.86432 -8.79453 -8.50675 -8.28200 -6.23444 -4.30533 0.38654 1.12554 2.05539 2.35866 2.90482 3.20853 3.25526 3.30237 3.39382 3.72589 3.92298 4.25849 4.33274 4.63870 4.67487 4.81077 5.06114 5.08990 5.10759 5.21871 5.30205 5.38776 5.44958 5.46372 5.63742 5.81523 5.89137 5.94968 5.98863 6.09356 6.18049 6.24588 6.29822 6.39824 6.57671 6.76200 6.79863 6.88972 7.09923 7.13912 7.42403 7.55188 7.66407 7.80842 7.84226 8.08595 8.48453 8.80590 9.34904 10.83250 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016337 B = 0.003815 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.523935 B = 7337.427050 C = 7837.434952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.136 4.136 3 C 0.221 3.779 4 H 0.050 0.950 5 C -0.522 4.522 6 H 0.070 0.930 7 C 0.064 3.936 8 N -0.886 5.886 9 Si 0.910 3.090 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.281 1.281 13 O -0.343 6.343 14 C 0.493 3.507 15 O -0.490 6.490 16 C 0.027 3.973 17 C -0.166 4.166 18 C 0.194 3.806 19 C -0.104 4.104 20 N -0.496 5.496 21 C 0.316 3.684 22 C -0.190 4.190 23 C 0.126 3.874 24 C -0.074 4.074 25 N -0.248 5.248 26 N -0.396 5.396 27 C 0.117 3.883 28 H 0.031 0.969 29 H 0.034 0.966 30 H 0.054 0.946 31 H 0.043 0.957 32 H 0.110 0.890 33 H 0.266 0.734 34 H 0.155 0.845 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.669 7.264 12.891 17.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.169 3.831 4 H 0.068 0.932 5 C -0.560 4.560 6 H 0.088 0.912 7 C -0.138 4.138 8 N -0.524 5.524 9 Si 0.737 3.263 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.207 1.207 13 O -0.259 6.259 14 C 0.336 3.664 15 O -0.379 6.379 16 C 0.015 3.985 17 C -0.188 4.188 18 C 0.045 3.955 19 C -0.161 4.161 20 N -0.213 5.213 21 C 0.076 3.924 22 C -0.200 4.200 23 C -0.049 4.049 24 C -0.132 4.132 25 N -0.064 5.064 26 N -0.186 5.186 27 C -0.024 4.024 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.128 0.872 33 H 0.076 0.924 34 H 0.173 0.827 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.111 0.889 39 H 0.089 0.911 40 H 0.108 0.892 41 H 0.087 0.913 42 H 0.107 0.893 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.826 8.863 12.942 18.510 hybrid contribution 1.416 -1.131 -0.693 1.940 sum -8.410 7.733 12.249 16.750 Atomic orbital electron populations 1.21871 0.98308 0.99170 1.00755 1.22036 0.92647 0.99194 1.03535 1.20789 0.95189 0.88803 0.78282 0.93201 1.21063 0.89511 1.39079 1.06343 0.91209 1.24868 0.99232 0.94685 0.95020 1.69890 1.35326 1.37731 1.09476 0.86243 0.83874 0.77918 0.78273 1.19461 1.20688 1.20728 1.86604 1.32876 1.61951 1.44465 1.20698 0.81721 0.77300 0.86700 1.90808 1.55247 1.57536 1.34325 1.19246 0.94044 0.92097 0.93092 1.22064 1.03034 1.02979 0.90690 1.21145 0.89997 0.88169 0.96223 1.20800 1.03032 1.01120 0.91158 1.66218 1.17418 1.12097 1.25539 1.18832 0.94871 0.89111 0.89589 1.19144 1.08141 0.98184 0.94529 1.22430 0.94653 0.90403 0.97436 1.20492 1.04947 1.02171 0.85591 1.76863 1.20783 1.21707 0.87029 1.48183 1.49140 1.17676 1.03646 1.21750 0.98141 0.91107 0.91358 0.95029 0.94721 0.92686 0.93857 0.87185 0.92380 0.82684 0.89776 0.89642 0.90157 0.88898 0.91089 0.89160 0.91263 0.89327 0.89451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.56 37.15 0.32 -2.68 16 2 C -0.14 -3.21 5.49 -26.73 -0.15 -3.36 16 3 C 0.22 5.57 2.25 -27.88 -0.06 5.51 16 4 H 0.05 1.38 7.16 -51.93 -0.37 1.00 16 5 C -0.52 -14.03 8.90 -34.44 -0.31 -14.33 16 6 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 7 C 0.06 1.70 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -24.12 11.29 55.43 0.63 -23.49 16 9 Si 0.91 20.46 29.54 -169.99 -5.02 15.44 16 10 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 13 O -0.34 -7.75 9.68 -40.55 -0.39 -8.14 16 14 C 0.49 10.01 5.45 34.62 0.19 10.20 16 15 O -0.49 -10.40 10.37 -19.24 -0.20 -10.60 16 16 C 0.03 0.48 5.87 -104.42 -0.61 -0.13 16 17 C -0.17 -2.43 9.38 -39.00 -0.37 -2.80 16 18 C 0.19 2.53 6.77 -82.59 -0.56 1.97 16 19 C -0.10 -0.88 10.14 36.00 0.37 -0.52 16 20 N -0.50 -7.26 10.25 -8.59 -0.09 -7.35 16 21 C 0.32 5.09 8.00 -156.07 -1.25 3.84 16 22 C -0.19 -3.32 5.98 -106.62 -0.64 -3.96 16 23 C 0.13 2.13 7.22 -82.18 -0.59 1.54 16 24 C -0.07 -1.15 8.58 36.01 0.31 -0.84 16 25 N -0.25 -3.99 12.44 33.83 0.42 -3.57 16 26 N -0.40 -5.82 4.07 -67.18 -0.27 -6.10 16 27 C 0.12 1.13 11.48 59.85 0.69 1.81 16 28 H 0.03 0.63 6.06 -51.92 -0.31 0.32 16 29 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.05 1.19 7.79 -51.93 -0.40 0.79 16 31 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.11 2.84 5.95 -51.93 -0.31 2.53 16 33 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 34 H 0.16 2.02 8.06 -52.49 -0.42 1.59 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.60 8.07 -51.93 -0.42 0.18 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.09 1.44 7.77 -51.93 -0.40 1.04 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.09 1.59 6.12 -51.93 -0.32 1.27 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.09 0.69 8.14 -51.92 -0.42 0.27 16 LS Contribution 356.57 15.07 5.37 5.37 Total: -1.00 -30.57 356.57 -8.20 -38.78 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -5.89 Total: 1.79 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -2.76 Total: -2.13 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: 0.69 Total: -40.51 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.59 Total: -18.74 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.57 -8.20 -38.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787086495.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.802 kcal (2) G-P(sol) polarization free energy of solvation -30.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds