Wall clock time and date at job start Tue Mar 31 2020 11:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53002 * 109.47500 * 2 1 4 4 H 1.08995 * 109.47115 * 305.00215 * 3 2 1 5 5 C 1.50694 * 109.47158 * 184.99804 * 3 2 1 6 6 H 1.07999 * 120.00191 * 240.00301 * 5 3 2 7 7 C 1.37885 * 119.99910 * 60.00588 * 5 3 2 8 8 N 1.31516 * 119.99882 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99923 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47346 * 0.02562 * 9 7 5 11 11 H 1.48511 * 109.46770 * 119.99846 * 9 7 5 12 12 H 1.48496 * 109.47278 * 239.99629 * 9 7 5 13 13 O 1.45204 * 109.46876 * 65.00200 * 3 2 1 14 14 C 1.34721 * 116.99756 * 270.00134 * 13 3 2 15 15 O 1.21466 * 120.00319 * 0.02562 * 14 13 3 16 16 C 1.47746 * 119.99972 * 180.02562 * 14 13 3 17 17 C 1.39389 * 121.09409 * 322.08390 * 16 14 13 18 18 C 1.38655 * 119.35581 * 179.76652 * 17 16 14 19 19 C 1.50694 * 119.16176 * 180.23541 * 18 17 16 20 20 N 1.31477 * 121.67785 * 0.50064 * 18 17 16 21 21 C 1.32504 * 121.98953 * 359.75976 * 20 18 17 22 22 C 1.40973 * 120.22013 * 359.97438 * 21 20 18 23 23 C 1.41085 * 107.13694 * 180.02562 * 22 21 20 24 24 C 1.50704 * 125.70802 * 180.02562 * 23 22 21 25 25 N 1.30257 * 108.58816 * 359.97438 * 23 22 21 26 26 N 1.37085 * 133.45196 * 179.97438 * 21 20 18 27 27 C 1.46508 * 125.90207 * 359.96298 * 26 21 20 28 28 H 1.09008 * 109.47536 * 300.00089 * 1 2 3 29 29 H 1.08994 * 109.47879 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47380 * 59.99869 * 1 2 3 31 31 H 1.09004 * 109.46953 * 120.00449 * 2 1 3 32 32 H 1.08999 * 109.46779 * 239.99995 * 2 1 3 33 33 H 0.96999 * 119.99867 * 180.02562 * 8 7 5 34 34 H 1.07997 * 120.32255 * 359.97438 * 17 16 14 35 35 H 1.08996 * 109.47384 * 270.25844 * 19 18 17 36 36 H 1.09002 * 109.47119 * 30.26261 * 19 18 17 37 37 H 1.09007 * 109.47126 * 150.25786 * 19 18 17 38 38 H 1.09000 * 109.47412 * 83.99648 * 24 23 22 39 39 H 1.08995 * 109.47153 * 204.00109 * 24 23 22 40 40 H 1.09001 * 109.46368 * 323.99905 * 24 23 22 41 41 H 1.08997 * 109.47273 * 270.01390 * 27 26 21 42 42 H 1.08991 * 109.47262 * 30.01884 * 27 26 21 43 43 H 1.09009 * 109.46830 * 150.01777 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5418 1.4442 -0.1238 6 1 4.1472 1.8887 0.6524 7 6 4.1432 0.8783 -1.2280 8 7 3.4061 0.3366 -2.1730 9 14 6.0049 0.8811 -1.3818 10 1 6.5987 1.5459 -0.1941 11 1 6.4969 -0.5178 -1.4630 12 1 6.3990 1.6165 -2.6102 13 8 1.6559 2.0916 1.2408 14 6 0.4684 2.7277 1.2561 15 8 -0.2273 2.7394 0.2605 16 6 0.0123 3.4112 2.4840 17 6 0.2527 2.8648 3.7436 18 6 -0.1871 3.5394 4.8723 19 6 0.0798 2.9474 6.2322 20 7 -0.8358 4.6798 4.7862 21 6 -1.1012 5.2500 3.6200 22 6 -0.6866 4.6374 2.4199 23 6 -1.1073 5.4698 1.3613 24 6 -0.8810 5.2094 -0.1057 25 7 -1.7250 6.5006 1.8639 26 7 -1.7448 6.4058 3.2604 27 6 -2.3492 7.3740 4.1789 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.8932 -0.5139 0.8900 32 1 1.8932 -0.5138 -0.8900 33 1 3.8292 -0.0618 -2.9496 34 1 0.7795 1.9270 3.8396 35 1 -0.7465 2.2944 6.5128 36 1 1.0045 2.3709 6.2023 37 1 0.1748 3.7487 6.9650 38 1 -1.6614 4.5480 -0.4820 39 1 -0.9101 6.1527 -0.6509 40 1 0.0924 4.7390 -0.2452 41 1 -3.3895 7.1033 4.3593 42 1 -1.8036 7.3692 5.1225 43 1 -2.3041 8.3700 3.7382 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787086495.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:00 Heat of formation + Delta-G solvation = -5.412899 kcal Electronic energy + Delta-G solvation = -26999.827069 eV Core-core repulsion = 23239.132285 eV Total energy + Delta-G solvation = -3760.694784 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.06624 -41.28612 -39.56766 -37.74843 -35.56165 -35.46580 -33.58154 -33.11905 -32.83819 -30.53768 -29.36404 -28.58792 -26.75474 -26.11403 -24.89530 -23.47549 -22.61899 -21.67914 -20.60881 -18.94829 -18.69310 -18.63368 -18.21840 -17.53539 -17.18054 -16.81665 -16.40863 -15.75023 -15.25460 -15.08781 -14.91345 -14.73260 -14.60455 -14.45795 -14.08460 -13.76680 -13.72649 -13.45650 -13.35975 -13.29994 -13.27281 -13.01041 -12.91055 -12.79879 -12.54423 -12.48395 -12.13307 -12.09489 -11.76065 -11.67550 -11.59393 -11.32835 -10.80172 -10.72139 -10.50153 -9.94412 -9.43208 -8.25696 -6.41611 -0.86453 -0.04636 0.98453 1.06788 1.41136 1.43545 1.45928 1.57283 1.80523 2.40584 2.50017 2.86846 3.04442 3.18879 3.44873 3.48090 3.62971 4.06567 4.14331 4.23730 4.28374 4.37033 4.41187 4.42713 4.56820 4.60949 4.63456 4.67272 4.70639 4.83228 4.85661 4.88570 4.89718 5.03839 5.11751 5.23476 5.26356 5.36070 5.42155 5.53167 5.69430 5.72472 5.94320 6.10524 6.22544 6.60213 6.66545 6.88550 7.28911 8.80934 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016337 B = 0.003815 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.523935 B = 7337.427050 C = 7837.434952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.129 4.129 3 C 0.227 3.773 4 H 0.014 0.986 5 C -0.548 4.548 6 H 0.064 0.936 7 C 0.022 3.978 8 N -0.911 5.911 9 Si 0.976 3.024 10 H -0.266 1.266 11 H -0.271 1.271 12 H -0.278 1.278 13 O -0.350 6.350 14 C 0.493 3.507 15 O -0.505 6.505 16 C 0.001 3.999 17 C -0.157 4.157 18 C 0.202 3.798 19 C -0.101 4.101 20 N -0.492 5.492 21 C 0.305 3.695 22 C -0.217 4.217 23 C 0.106 3.894 24 C -0.064 4.064 25 N -0.252 5.252 26 N -0.392 5.392 27 C 0.107 3.893 28 H 0.035 0.965 29 H 0.060 0.940 30 H 0.038 0.962 31 H 0.049 0.951 32 H 0.087 0.913 33 H 0.270 0.730 34 H 0.172 0.828 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.064 0.936 41 H 0.086 0.914 42 H 0.103 0.897 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.575 7.359 15.420 19.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.167 4.167 3 C 0.174 3.826 4 H 0.032 0.968 5 C -0.586 4.586 6 H 0.082 0.918 7 C -0.178 4.178 8 N -0.549 5.549 9 Si 0.800 3.200 10 H -0.190 1.190 11 H -0.197 1.197 12 H -0.203 1.203 13 O -0.266 6.266 14 C 0.337 3.663 15 O -0.394 6.394 16 C -0.010 4.010 17 C -0.178 4.178 18 C 0.052 3.948 19 C -0.158 4.158 20 N -0.209 5.209 21 C 0.064 3.936 22 C -0.227 4.227 23 C -0.068 4.068 24 C -0.123 4.123 25 N -0.069 5.069 26 N -0.182 5.182 27 C -0.032 4.032 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.189 0.811 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.110 0.890 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.082 0.918 41 H 0.104 0.896 42 H 0.121 0.879 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -9.763 8.985 15.479 20.388 hybrid contribution 1.315 -1.104 -1.371 2.197 sum -8.449 7.881 14.108 18.235 Atomic orbital electron populations 1.21724 0.96294 1.00655 1.00138 1.21873 0.94375 0.97863 1.02589 1.20484 0.94519 0.89388 0.78242 0.96776 1.21324 0.90480 1.39917 1.06860 0.91761 1.25702 1.03800 0.93924 0.94395 1.70003 1.37193 1.37862 1.09837 0.85236 0.78223 0.78301 0.78278 1.18972 1.19658 1.20332 1.86573 1.34365 1.62625 1.43051 1.21183 0.80691 0.76711 0.87701 1.90791 1.55410 1.57879 1.35364 1.19148 0.96184 0.92961 0.92756 1.22402 1.02034 1.03359 0.90052 1.21919 0.88029 0.87196 0.97694 1.20987 1.04720 1.01780 0.88280 1.66410 1.17468 1.12514 1.24486 1.19053 0.95264 0.89654 0.89585 1.19338 1.09247 0.98637 0.95511 1.22492 0.95687 0.91003 0.97668 1.20338 1.03200 1.02801 0.85955 1.76778 1.20589 1.21331 0.88203 1.48608 1.48287 1.17817 1.03493 1.22166 0.98989 0.90919 0.91132 0.94604 0.92064 0.94299 0.93261 0.89432 0.92041 0.81059 0.87673 0.87724 0.88995 0.89379 0.89086 0.91760 0.89572 0.87870 0.87734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.50 8.56 71.98 0.62 -4.88 16 2 C -0.13 -6.21 5.49 30.59 0.17 -6.04 16 3 C 0.23 11.85 2.25 29.85 0.07 11.91 16 4 H 0.01 0.84 7.16 -2.39 -0.02 0.83 16 5 C -0.55 -30.21 8.90 25.60 0.23 -29.98 16 6 H 0.06 3.52 7.81 -2.91 -0.02 3.49 16 7 C 0.02 1.18 5.29 84.66 0.45 1.62 16 8 N -0.91 -50.58 11.29 21.45 0.24 -50.34 16 9 Si 0.98 42.01 29.54 68.60 2.03 44.03 16 10 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 11 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 12 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 13 O -0.35 -16.31 9.68 -56.31 -0.55 -16.86 16 14 C 0.49 20.78 5.45 70.34 0.38 21.16 16 15 O -0.50 -22.59 10.37 19.95 0.21 -22.38 16 16 C 0.00 0.05 5.87 -19.74 -0.12 -0.07 16 17 C -0.16 -4.39 9.38 22.65 0.21 -4.18 16 18 C 0.20 4.76 6.77 42.71 0.29 5.04 16 19 C -0.10 -1.32 10.14 71.23 0.72 -0.60 16 20 N -0.49 -13.35 10.25 -181.10 -1.86 -15.21 16 21 C 0.30 9.51 8.00 134.13 1.07 10.59 16 22 C -0.22 -7.68 5.98 -21.16 -0.13 -7.80 16 23 C 0.11 3.67 7.22 43.49 0.31 3.98 16 24 C -0.06 -2.13 8.58 71.24 0.61 -1.52 16 25 N -0.25 -8.06 12.44 -46.89 -0.58 -8.65 16 26 N -0.39 -11.04 4.07 -366.45 -1.49 -12.53 16 27 C 0.11 1.81 11.48 127.77 1.47 3.27 16 28 H 0.03 1.44 6.06 -2.38 -0.01 1.43 16 29 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.04 1.73 7.79 -2.39 -0.02 1.71 16 31 H 0.05 2.26 8.14 -2.38 -0.02 2.24 16 32 H 0.09 4.64 5.95 -2.39 -0.01 4.62 16 33 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 34 H 0.17 4.13 8.06 -2.91 -0.02 4.11 16 35 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.10 1.03 8.07 -2.39 -0.02 1.01 16 37 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 38 H 0.09 2.92 7.77 -2.39 -0.02 2.90 16 39 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 40 H 0.06 2.44 6.12 -2.39 -0.01 2.43 16 41 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 Total: -1.00 -67.96 356.57 5.39 -62.57 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 1.03 Total: 16.85 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: 6.36 Total: 2.51 kcal Atomic # 7 Polarization: -83.03 SS G_CDS: -3.69 Total: -86.72 kcal Atomic # 8 Polarization: -38.91 SS G_CDS: -0.34 Total: -39.24 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.03 kcal Total: -67.96 5.39 -62.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787086495.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.155 kcal (2) G-P(sol) polarization free energy of solvation -67.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds