Wall clock time and date at job start Tue Mar 31 2020 11:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47326 * 2 1 4 4 H 1.08999 * 109.47038 * 55.00156 * 3 2 1 5 5 C 1.50705 * 109.47024 * 174.99768 * 3 2 1 6 6 H 1.08004 * 119.99485 * 120.00252 * 5 3 2 7 7 C 1.37871 * 120.00260 * 300.00076 * 5 3 2 8 8 N 1.31516 * 120.00036 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99951 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47524 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47267 * 120.00242 * 9 7 5 12 12 H 1.48504 * 109.46824 * 240.00023 * 9 7 5 13 13 O 1.45196 * 109.47386 * 295.00177 * 3 2 1 14 14 C 1.34725 * 117.00321 * 89.99848 * 13 3 2 15 15 O 1.21468 * 119.99553 * 359.97438 * 14 13 3 16 16 C 1.47748 * 120.00132 * 180.02562 * 14 13 3 17 17 C 1.39391 * 121.09281 * 327.71841 * 16 14 13 18 18 C 1.38650 * 119.35225 * 179.97438 * 17 16 14 19 19 C 1.50705 * 119.15799 * 180.02562 * 18 17 16 20 20 N 1.31472 * 121.68296 * 0.02562 * 18 17 16 21 21 C 1.32508 * 121.98729 * 359.95935 * 20 18 17 22 22 C 1.40965 * 120.21821 * 0.04069 * 21 20 18 23 23 C 1.41090 * 107.13798 * 179.97438 * 22 21 20 24 24 C 1.50695 * 125.71152 * 179.97438 * 23 22 21 25 25 N 1.30261 * 108.58304 * 0.26667 * 23 22 21 26 26 N 1.37089 * 133.44722 * 180.02562 * 21 20 18 27 27 C 1.46493 * 125.90717 * 0.02562 * 26 21 20 28 28 H 1.09003 * 109.46766 * 59.99684 * 1 2 3 29 29 H 1.08994 * 109.47038 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46824 * 300.00032 * 1 2 3 31 31 H 1.08999 * 109.46894 * 239.99500 * 2 1 3 32 32 H 1.09003 * 109.46766 * 120.00316 * 2 1 3 33 33 H 0.96998 * 120.00417 * 179.97438 * 8 7 5 34 34 H 1.07993 * 120.32425 * 0.02562 * 17 16 14 35 35 H 1.08998 * 109.46881 * 89.99282 * 19 18 17 36 36 H 1.08995 * 109.46739 * 209.99785 * 19 18 17 37 37 H 1.09001 * 109.46993 * 329.99972 * 19 18 17 38 38 H 1.09006 * 109.46827 * 83.60354 * 24 23 22 39 39 H 1.09000 * 109.47276 * 203.60283 * 24 23 22 40 40 H 1.08997 * 109.47247 * 323.60634 * 24 23 22 41 41 H 1.09004 * 109.47721 * 90.00144 * 27 26 21 42 42 H 1.09002 * 109.47116 * 209.99684 * 27 26 21 43 43 H 1.09003 * 109.47483 * 329.99855 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9814 0.8418 5 6 3.5420 1.4441 0.1239 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8782 1.2280 8 7 3.4062 0.3373 2.1734 9 14 6.0050 0.8811 1.3818 10 1 6.5988 1.5460 0.1943 11 1 6.3991 1.6165 2.6103 12 1 6.4970 -0.5177 1.4630 13 8 1.6560 2.0917 -1.2406 14 6 0.4685 2.7278 -1.2560 15 8 -0.2272 2.7394 -0.2603 16 6 0.0119 3.4104 -2.4842 17 6 0.9215 3.9987 -3.3613 18 6 0.4533 4.6295 -4.5038 19 6 1.4407 5.2636 -5.4494 20 7 -0.8300 4.6886 -4.7833 21 6 -1.7462 4.1498 -3.9921 22 6 -1.3610 3.4881 -2.8085 23 6 -2.5409 3.0276 -2.1868 24 6 -2.6110 2.2622 -0.8906 25 7 -3.5591 3.3693 -2.9239 26 7 -3.1136 4.0715 -4.0500 27 6 -3.9616 4.6225 -5.1100 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.8292 -0.0611 2.9500 34 1 1.9806 3.9629 -3.1535 35 1 1.7509 4.5318 -6.1953 36 1 0.9732 6.1135 -5.9466 37 1 2.3122 5.6041 -4.8902 38 1 -2.5855 2.9608 -0.0543 39 1 -3.5374 1.6888 -0.8569 40 1 -1.7609 1.5834 -0.8231 41 1 -4.0994 3.8745 -5.8908 42 1 -4.9312 4.8963 -4.6941 43 1 -3.4852 5.5066 -5.5338 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787086496.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:04 Heat of formation + Delta-G solvation = -2.770564 kcal Electronic energy + Delta-G solvation = -27103.678873 eV Core-core repulsion = 23343.098668 eV Total energy + Delta-G solvation = -3760.580204 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.06781 -41.28798 -39.57071 -37.74157 -35.53259 -35.48933 -33.65711 -33.08145 -32.80674 -30.53467 -29.33813 -28.59461 -26.75721 -26.12401 -24.84715 -23.52311 -22.66228 -21.63511 -20.57823 -18.94585 -18.71846 -18.65729 -18.10276 -17.52942 -17.24656 -16.91315 -16.36024 -15.75222 -15.24275 -15.05439 -14.90436 -14.81021 -14.50410 -14.41214 -14.06137 -13.86832 -13.73638 -13.48125 -13.35340 -13.28476 -13.20890 -13.05930 -13.00703 -12.72615 -12.53596 -12.32506 -12.11350 -12.03939 -11.70508 -11.60342 -11.57372 -11.35964 -10.80753 -10.71045 -10.49958 -9.93927 -9.42104 -8.24523 -6.40446 -0.88128 -0.04831 0.99531 1.07000 1.44643 1.45482 1.48463 1.58311 1.80137 2.41587 2.51266 2.87722 3.05780 3.19708 3.45434 3.48450 3.63346 4.07851 4.14274 4.24507 4.30074 4.37130 4.38326 4.41686 4.56116 4.61322 4.66943 4.69998 4.73162 4.83533 4.86019 4.88662 4.93678 5.04694 5.11829 5.22811 5.30884 5.36532 5.45396 5.55170 5.69049 5.72958 5.94865 6.10807 6.23870 6.61481 6.66698 6.89183 7.29974 8.82221 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018090 B = 0.003948 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.417360 B = 7090.323978 C = 8394.182233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.131 4.131 3 C 0.226 3.774 4 H 0.015 0.985 5 C -0.547 4.547 6 H 0.069 0.931 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.978 3.022 10 H -0.262 1.262 11 H -0.278 1.278 12 H -0.275 1.275 13 O -0.349 6.349 14 C 0.491 3.509 15 O -0.504 6.504 16 C -0.001 4.001 17 C -0.156 4.156 18 C 0.201 3.799 19 C -0.101 4.101 20 N -0.491 5.491 21 C 0.303 3.697 22 C -0.214 4.214 23 C 0.108 3.892 24 C -0.074 4.074 25 N -0.253 5.253 26 N -0.392 5.392 27 C 0.107 3.893 28 H 0.038 0.962 29 H 0.060 0.940 30 H 0.045 0.955 31 H 0.043 0.957 32 H 0.088 0.912 33 H 0.270 0.730 34 H 0.170 0.830 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.104 0.896 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.203 8.014 -15.124 18.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.169 4.169 3 C 0.174 3.826 4 H 0.033 0.967 5 C -0.584 4.584 6 H 0.087 0.913 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.801 3.199 10 H -0.186 1.186 11 H -0.204 1.204 12 H -0.200 1.200 13 O -0.266 6.266 14 C 0.335 3.665 15 O -0.394 6.394 16 C -0.012 4.012 17 C -0.178 4.178 18 C 0.051 3.949 19 C -0.158 4.158 20 N -0.208 5.208 21 C 0.063 3.937 22 C -0.225 4.225 23 C -0.066 4.066 24 C -0.133 4.133 25 N -0.070 5.070 26 N -0.183 5.183 27 C -0.032 4.032 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.106 0.894 33 H 0.079 0.921 34 H 0.188 0.812 35 H 0.122 0.878 36 H 0.111 0.889 37 H 0.122 0.878 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.100 0.900 41 H 0.104 0.896 42 H 0.123 0.877 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.161 8.330 -15.628 20.418 hybrid contribution 1.633 -0.611 1.516 2.310 sum -8.528 7.720 -14.113 18.207 Atomic orbital electron populations 1.21846 0.96209 1.00794 1.00333 1.21885 0.94629 0.98067 1.02338 1.20483 0.94676 0.89241 0.78240 0.96681 1.21348 0.90374 1.39853 1.06864 0.91325 1.25737 1.03918 0.93964 0.94438 1.70006 1.37244 1.37969 1.09853 0.85205 0.78088 0.78170 0.78394 1.18586 1.20364 1.20000 1.86559 1.34384 1.62589 1.43032 1.21199 0.80420 0.76920 0.88003 1.90791 1.54776 1.58092 1.35722 1.19144 0.91993 0.97167 0.92926 1.22432 1.01766 0.99419 0.94161 1.21904 0.89404 0.90815 0.92801 1.20984 0.95665 1.01570 0.97557 1.66408 1.01311 1.21597 1.31470 1.19064 0.87298 0.95847 0.91475 1.19333 0.93561 1.09554 1.00018 1.22526 0.88594 0.97846 0.97665 1.20592 1.03837 0.99280 0.89544 1.76788 1.22291 1.12094 0.95836 1.48604 1.01344 1.47793 1.20513 1.22158 0.94839 0.99755 0.86450 0.94312 0.92133 0.93579 0.93847 0.89350 0.92105 0.81227 0.87800 0.88912 0.87790 0.89710 0.89391 0.89991 0.89617 0.87734 0.87903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.62 8.03 71.98 0.58 -5.04 16 2 C -0.13 -6.37 5.49 30.59 0.17 -6.21 16 3 C 0.23 11.80 2.25 29.85 0.07 11.87 16 4 H 0.02 0.89 7.16 -2.39 -0.02 0.88 16 5 C -0.55 -29.78 8.90 25.60 0.23 -29.55 16 6 H 0.07 3.65 7.81 -2.91 -0.02 3.63 16 7 C 0.02 1.03 5.29 84.65 0.45 1.48 16 8 N -0.91 -50.62 11.29 21.45 0.24 -50.38 16 9 Si 0.98 41.58 29.54 68.60 2.03 43.61 16 10 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 11 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 12 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 13 O -0.35 -16.20 9.60 -56.35 -0.54 -16.74 16 14 C 0.49 20.60 5.78 70.34 0.41 21.01 16 15 O -0.50 -22.40 10.16 19.94 0.20 -22.20 16 16 C 0.00 -0.02 5.89 -19.74 -0.12 -0.13 16 17 C -0.16 -4.46 9.33 22.65 0.21 -4.25 16 18 C 0.20 4.80 6.77 42.71 0.29 5.09 16 19 C -0.10 -1.37 10.14 71.24 0.72 -0.65 16 20 N -0.49 -13.35 10.25 -181.10 -1.86 -15.20 16 21 C 0.30 9.41 8.00 134.13 1.07 10.49 16 22 C -0.21 -7.49 5.98 -21.16 -0.13 -7.62 16 23 C 0.11 3.67 7.21 43.49 0.31 3.99 16 24 C -0.07 -2.39 8.53 71.23 0.61 -1.78 16 25 N -0.25 -7.98 12.44 -46.89 -0.58 -8.56 16 26 N -0.39 -10.94 4.07 -366.48 -1.49 -12.43 16 27 C 0.11 1.79 11.48 127.77 1.47 3.26 16 28 H 0.04 1.56 4.40 -2.39 -0.01 1.55 16 29 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.05 2.00 7.79 -2.38 -0.02 1.98 16 31 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.09 4.70 5.95 -2.39 -0.01 4.69 16 33 H 0.27 14.03 8.31 -92.71 -0.77 13.25 16 34 H 0.17 4.33 8.03 -2.91 -0.02 4.30 16 35 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.10 1.08 8.07 -2.39 -0.02 1.06 16 38 H 0.08 2.78 7.73 -2.38 -0.02 2.76 16 39 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.08 2.93 3.55 -2.39 -0.01 2.92 16 41 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 42 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -67.14 351.70 5.38 -61.76 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: 1.04 Total: 18.20 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: 6.34 Total: 1.94 kcal Atomic # 7 Polarization: -82.88 SS G_CDS: -3.69 Total: -86.57 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -0.34 Total: -38.94 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Total: -67.14 5.38 -61.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787086496.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.992 kcal (2) G-P(sol) polarization free energy of solvation -67.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds