Wall clock time and date at job start Tue Mar 31 2020 11:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46915 * 2 1 4 4 H 1.09002 * 109.46877 * 304.99855 * 3 2 1 5 5 C 1.50698 * 109.46698 * 185.00344 * 3 2 1 6 6 H 1.08006 * 119.99874 * 239.99719 * 5 3 2 7 7 C 1.37875 * 120.00409 * 60.00055 * 5 3 2 8 8 N 1.31517 * 119.99920 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00276 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47136 * 59.99758 * 9 7 5 11 11 H 1.48500 * 109.47371 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46874 * 300.00285 * 9 7 5 13 13 O 1.45192 * 109.47238 * 65.00116 * 3 2 1 14 14 C 1.34731 * 117.00135 * 269.99979 * 13 3 2 15 15 O 1.21485 * 119.99881 * 0.02562 * 14 13 3 16 16 C 1.47557 * 119.99910 * 179.97438 * 14 13 3 17 17 C 1.40240 * 120.41777 * 0.02562 * 16 14 13 18 18 N 1.31169 * 121.36816 * 180.02562 * 17 16 14 19 19 C 1.32944 * 121.85187 * 359.97438 * 18 17 16 20 20 C 1.41076 * 120.21489 * 359.97438 * 19 18 17 21 21 C 1.45981 * 106.43283 * 179.97438 * 20 19 18 22 22 N 1.30206 * 107.58135 * 359.75615 * 21 20 19 23 23 N 1.36622 * 133.25489 * 179.97438 * 19 18 17 24 24 C 1.46497 * 125.34463 * 359.97438 * 23 19 18 25 25 C 1.52997 * 109.47188 * 240.00234 * 24 23 19 26 26 C 1.52992 * 109.47081 * 119.99778 * 24 23 19 27 27 C 1.39569 * 120.41671 * 180.02562 * 16 14 13 28 28 H 1.08999 * 109.46596 * 299.99900 * 1 2 3 29 29 H 1.08991 * 109.47121 * 59.99921 * 1 2 3 30 30 H 1.09004 * 109.46917 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46846 * 240.00590 * 2 1 3 32 32 H 1.08997 * 109.47510 * 120.00270 * 2 1 3 33 33 H 0.97003 * 119.99837 * 180.02562 * 8 7 5 34 34 H 1.07997 * 119.31418 * 0.02562 * 17 16 14 35 35 H 1.07992 * 126.21077 * 179.97438 * 21 20 19 36 36 H 1.09002 * 109.46725 * 0.02562 * 24 23 19 37 37 H 1.09002 * 109.47153 * 299.99573 * 25 24 23 38 38 H 1.09001 * 109.46832 * 179.97438 * 25 24 23 39 39 H 1.09004 * 109.47261 * 59.99745 * 25 24 23 40 40 H 1.09002 * 109.47103 * 60.00523 * 26 24 23 41 41 H 1.09001 * 109.47066 * 180.02562 * 26 24 23 42 42 H 1.08996 * 109.47747 * 300.00111 * 26 24 23 43 43 H 1.08005 * 121.02587 * 359.96256 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8889 0.6522 7 6 4.1433 0.8784 -1.2280 8 7 3.4061 0.3375 -2.1734 9 14 6.0049 0.8813 -1.3820 10 1 6.5975 0.1473 -0.2351 11 1 6.3978 0.2178 -2.6511 12 1 6.4994 2.2815 -1.3822 13 8 1.6559 2.0917 1.2406 14 6 0.4683 2.7278 1.2560 15 8 -0.2275 2.7394 0.2602 16 6 0.0123 3.4094 2.4827 17 6 0.8083 3.4011 3.6373 18 7 0.4210 4.0005 4.7379 19 6 -0.7398 4.6439 4.8152 20 6 -1.5970 4.6987 3.6961 21 6 -2.7675 5.4668 4.1097 22 7 -2.5924 5.8116 5.3530 23 7 -1.3635 5.3327 5.8167 24 6 -0.8313 5.5323 7.1669 25 6 -1.7942 4.9256 8.1895 26 6 -0.6768 7.0301 7.4379 27 6 -1.2166 4.0706 2.5085 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8935 -0.5138 0.8899 33 1 3.8292 -0.0609 -2.9501 34 1 1.7598 2.8906 3.6199 35 1 -3.6248 5.7029 3.4969 36 1 0.1408 5.0463 7.2497 37 1 -2.7661 5.4121 8.1065 38 1 -1.3980 5.0738 9.1940 39 1 -1.9043 3.8585 7.9963 40 1 -1.6487 7.5165 7.3549 41 1 -0.2804 7.1786 8.4424 42 1 0.0092 7.4624 6.7095 43 1 -1.8532 4.0964 1.6364 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787086848.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:36 Heat of formation + Delta-G solvation = 3.842913 kcal Electronic energy + Delta-G solvation = -26080.542523 eV Core-core repulsion = 22320.249101 eV Total energy + Delta-G solvation = -3760.293422 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.75348 -39.68115 -38.08801 -35.83238 -35.78305 -33.52642 -32.73273 -31.38461 -30.55321 -29.83874 -27.62244 -27.29590 -24.57139 -23.89314 -23.22320 -22.99077 -20.98579 -20.04309 -19.61070 -18.01247 -17.74804 -16.84058 -16.08779 -15.99699 -15.80530 -15.29301 -15.19349 -14.80105 -14.55513 -14.13352 -13.65241 -13.63407 -13.09881 -13.05536 -12.81947 -12.75333 -12.48564 -12.46926 -12.10937 -11.74216 -11.73873 -11.50337 -11.37383 -11.21204 -11.03853 -10.95699 -10.67187 -10.58777 -10.30560 -10.00740 -9.76517 -9.49727 -9.34512 -9.17173 -8.83033 -8.48784 -8.42425 -6.19224 -4.26429 0.64655 0.78805 1.88597 2.25799 3.02725 3.26283 3.29729 3.31301 3.51049 3.87613 3.94935 4.08429 4.32559 4.40948 4.55720 4.59986 4.76936 4.84032 4.94091 5.12768 5.17752 5.19392 5.25337 5.38661 5.41310 5.45913 5.68122 5.77543 5.80082 6.06107 6.12708 6.23213 6.30041 6.31918 6.45893 6.64859 6.86420 6.95330 7.15873 7.21472 7.23555 7.60176 7.72448 7.75042 7.91929 8.14011 8.58575 8.85829 9.38738 10.87477 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022106 B = 0.002866 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.333208 B = 9766.870231 C =10476.049508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.224 3.776 4 H 0.049 0.951 5 C -0.522 4.522 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.275 1.275 13 O -0.350 6.350 14 C 0.508 3.492 15 O -0.513 6.513 16 C -0.209 4.209 17 C 0.226 3.774 18 N -0.512 5.512 19 C 0.331 3.669 20 C -0.244 4.244 21 C 0.094 3.906 22 N -0.241 5.241 23 N -0.385 5.385 24 C 0.162 3.838 25 C -0.161 4.161 26 C -0.161 4.161 27 C 0.069 3.931 28 H 0.032 0.968 29 H 0.053 0.947 30 H 0.033 0.967 31 H 0.109 0.891 32 H 0.042 0.958 33 H 0.267 0.733 34 H 0.185 0.815 35 H 0.203 0.797 36 H 0.109 0.891 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.060 0.940 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.462 9.277 16.318 21.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.171 3.829 4 H 0.066 0.934 5 C -0.560 4.560 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.200 1.200 13 O -0.267 6.267 14 C 0.351 3.649 15 O -0.404 6.404 16 C -0.214 4.214 17 C 0.056 3.944 18 N -0.227 5.227 19 C 0.092 3.908 20 C -0.254 4.254 21 C -0.105 4.105 22 N -0.052 5.052 23 N -0.176 5.176 24 C 0.061 3.939 25 C -0.218 4.218 26 C -0.219 4.219 27 C 0.041 3.959 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.127 0.873 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.202 0.798 35 H 0.220 0.780 36 H 0.127 0.873 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -10.569 9.838 17.807 22.926 hybrid contribution 0.707 -0.518 -1.668 1.884 sum -9.862 9.321 16.140 21.086 Atomic orbital electron populations 1.21864 0.98381 0.99039 1.00758 1.22030 0.92638 0.99299 1.03440 1.20714 0.95018 0.88741 0.78389 0.93355 1.20998 0.89587 1.39117 1.06314 0.91277 1.24875 0.99208 0.94746 0.95056 1.69880 1.35480 1.37721 1.09463 0.86344 0.83892 0.78495 0.77475 1.19910 1.21074 1.19993 1.86508 1.33372 1.62402 1.44383 1.20446 0.81160 0.76707 0.86572 1.90784 1.55631 1.58963 1.35045 1.20142 0.97995 1.07573 0.95702 1.23232 0.97889 0.88547 0.84728 1.66804 1.14185 1.13003 1.28720 1.19249 0.90950 0.92419 0.88178 1.20407 0.98847 1.09982 0.96130 1.25092 0.97584 0.95621 0.92179 1.76623 0.98243 1.17870 1.12499 1.48463 1.13724 1.45168 1.10237 1.21344 0.97791 0.97790 0.76991 1.22145 1.00079 1.01430 0.98196 1.22143 1.03198 0.94126 1.02388 1.21179 0.92787 0.86296 0.95640 0.94940 0.92780 0.94821 0.87299 0.93881 0.92314 0.79838 0.78033 0.87295 0.91255 0.90615 0.92116 0.91268 0.90613 0.92092 0.82789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.56 37.16 0.32 -2.75 16 2 C -0.14 -3.29 5.49 -26.73 -0.15 -3.44 16 3 C 0.22 5.75 2.25 -27.88 -0.06 5.68 16 4 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 5 C -0.52 -14.18 8.90 -34.44 -0.31 -14.49 16 6 H 0.07 1.84 7.81 -52.48 -0.41 1.43 16 7 C 0.06 1.70 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -24.59 11.30 55.43 0.63 -23.97 16 9 Si 0.91 20.67 29.54 -169.99 -5.02 15.65 16 10 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 13 O -0.35 -7.91 9.06 -40.58 -0.37 -8.28 16 14 C 0.51 10.24 6.35 34.53 0.22 10.46 16 15 O -0.51 -11.36 13.58 -19.25 -0.26 -11.62 16 16 C -0.21 -3.37 5.89 -104.85 -0.62 -3.99 16 17 C 0.23 3.38 10.76 -17.08 -0.18 3.20 16 18 N -0.51 -7.53 10.35 -12.01 -0.12 -7.65 16 19 C 0.33 4.62 7.91 -156.08 -1.23 3.39 16 20 C -0.24 -3.15 6.36 -105.20 -0.67 -3.82 16 21 C 0.09 0.96 12.30 -15.14 -0.19 0.78 16 22 N -0.24 -2.76 12.20 31.87 0.39 -2.38 16 23 N -0.39 -4.65 3.31 -53.90 -0.18 -4.83 16 24 C 0.16 1.51 3.66 -67.94 -0.25 1.26 16 25 C -0.16 -1.23 9.43 37.16 0.35 -0.88 16 26 C -0.16 -1.24 9.44 37.15 0.35 -0.89 16 27 C 0.07 0.95 9.76 -38.56 -0.38 0.58 16 28 H 0.03 0.67 6.06 -51.93 -0.31 0.35 16 29 H 0.05 1.21 7.79 -51.93 -0.40 0.80 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.11 2.87 5.95 -51.93 -0.31 2.56 16 32 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.18 2.58 7.60 -52.49 -0.40 2.18 16 35 H 0.20 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.11 1.03 8.03 -51.93 -0.42 0.61 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.15 1.90 7.72 -52.48 -0.41 1.49 16 LS Contribution 362.63 15.07 5.46 5.46 Total: -1.00 -30.87 362.63 -8.33 -39.20 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -5.97 Total: 1.70 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -2.89 Total: -3.30 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.71 Total: -38.82 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.63 Total: -19.90 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.87 -8.33 -39.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787086848.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.046 kcal (2) G-P(sol) polarization free energy of solvation -30.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds