Wall clock time and date at job start Tue Mar 31 2020 11:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46915 * 2 1 4 4 H 1.09002 * 109.46877 * 304.99855 * 3 2 1 5 5 C 1.50698 * 109.46698 * 185.00344 * 3 2 1 6 6 H 1.08006 * 119.99874 * 239.99719 * 5 3 2 7 7 C 1.37875 * 120.00409 * 60.00055 * 5 3 2 8 8 N 1.31517 * 119.99920 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00276 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47136 * 59.99758 * 9 7 5 11 11 H 1.48500 * 109.47371 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46874 * 300.00285 * 9 7 5 13 13 O 1.45192 * 109.47238 * 65.00116 * 3 2 1 14 14 C 1.34731 * 117.00135 * 269.99979 * 13 3 2 15 15 O 1.21485 * 119.99881 * 0.02562 * 14 13 3 16 16 C 1.47557 * 119.99910 * 179.97438 * 14 13 3 17 17 C 1.40240 * 120.41777 * 0.02562 * 16 14 13 18 18 N 1.31169 * 121.36816 * 180.02562 * 17 16 14 19 19 C 1.32944 * 121.85187 * 359.97438 * 18 17 16 20 20 C 1.41076 * 120.21489 * 359.97438 * 19 18 17 21 21 C 1.45981 * 106.43283 * 179.97438 * 20 19 18 22 22 N 1.30206 * 107.58135 * 359.75615 * 21 20 19 23 23 N 1.36622 * 133.25489 * 179.97438 * 19 18 17 24 24 C 1.46497 * 125.34463 * 359.97438 * 23 19 18 25 25 C 1.52997 * 109.47188 * 240.00234 * 24 23 19 26 26 C 1.52992 * 109.47081 * 119.99778 * 24 23 19 27 27 C 1.39569 * 120.41671 * 180.02562 * 16 14 13 28 28 H 1.08999 * 109.46596 * 299.99900 * 1 2 3 29 29 H 1.08991 * 109.47121 * 59.99921 * 1 2 3 30 30 H 1.09004 * 109.46917 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46846 * 240.00590 * 2 1 3 32 32 H 1.08997 * 109.47510 * 120.00270 * 2 1 3 33 33 H 0.97003 * 119.99837 * 180.02562 * 8 7 5 34 34 H 1.07997 * 119.31418 * 0.02562 * 17 16 14 35 35 H 1.07992 * 126.21077 * 179.97438 * 21 20 19 36 36 H 1.09002 * 109.46725 * 0.02562 * 24 23 19 37 37 H 1.09002 * 109.47153 * 299.99573 * 25 24 23 38 38 H 1.09001 * 109.46832 * 179.97438 * 25 24 23 39 39 H 1.09004 * 109.47261 * 59.99745 * 25 24 23 40 40 H 1.09002 * 109.47103 * 60.00523 * 26 24 23 41 41 H 1.09001 * 109.47066 * 180.02562 * 26 24 23 42 42 H 1.08996 * 109.47747 * 300.00111 * 26 24 23 43 43 H 1.08005 * 121.02587 * 359.96256 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8889 0.6522 7 6 4.1433 0.8784 -1.2280 8 7 3.4061 0.3375 -2.1734 9 14 6.0049 0.8813 -1.3820 10 1 6.5975 0.1473 -0.2351 11 1 6.3978 0.2178 -2.6511 12 1 6.4994 2.2815 -1.3822 13 8 1.6559 2.0917 1.2406 14 6 0.4683 2.7278 1.2560 15 8 -0.2275 2.7394 0.2602 16 6 0.0123 3.4094 2.4827 17 6 0.8083 3.4011 3.6373 18 7 0.4210 4.0005 4.7379 19 6 -0.7398 4.6439 4.8152 20 6 -1.5970 4.6987 3.6961 21 6 -2.7675 5.4668 4.1097 22 7 -2.5924 5.8116 5.3530 23 7 -1.3635 5.3327 5.8167 24 6 -0.8313 5.5323 7.1669 25 6 -1.7942 4.9256 8.1895 26 6 -0.6768 7.0301 7.4379 27 6 -1.2166 4.0706 2.5085 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8935 -0.5138 0.8899 33 1 3.8292 -0.0609 -2.9501 34 1 1.7598 2.8906 3.6199 35 1 -3.6248 5.7029 3.4969 36 1 0.1408 5.0463 7.2497 37 1 -2.7661 5.4121 8.1065 38 1 -1.3980 5.0738 9.1940 39 1 -1.9043 3.8585 7.9963 40 1 -1.6487 7.5165 7.3549 41 1 -0.2804 7.1786 8.4424 42 1 0.0092 7.4624 6.7095 43 1 -1.8532 4.0964 1.6364 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787086848.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:36 Heat of formation + Delta-G solvation = -12.218851 kcal Electronic energy + Delta-G solvation = -26081.239013 eV Core-core repulsion = 22320.249101 eV Total energy + Delta-G solvation = -3760.989913 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.76641 -41.28484 -39.24405 -37.56582 -36.58682 -35.46603 -33.88103 -33.28146 -31.59655 -30.86717 -29.23690 -28.23246 -25.96969 -25.00988 -24.84195 -23.98419 -22.54375 -21.44159 -20.88941 -19.28971 -18.93233 -18.61288 -17.64654 -17.34825 -17.04818 -16.67926 -16.61055 -16.18053 -15.55834 -15.15495 -14.82082 -14.74663 -14.55829 -14.45599 -14.20308 -13.95589 -13.53550 -13.35455 -13.27478 -13.16089 -13.11007 -13.07612 -12.77888 -12.57253 -12.49634 -12.44804 -12.13087 -11.88629 -11.73751 -11.64030 -11.53634 -11.35535 -10.79341 -10.66331 -10.48449 -10.20223 -9.49171 -8.23919 -6.40012 -0.45282 -0.35952 0.98777 1.35561 1.44555 1.47721 1.55217 1.59192 1.94748 2.43452 2.63397 2.99775 3.06056 3.12142 3.46790 3.66110 3.74873 3.84624 3.93144 4.05644 4.13918 4.27877 4.38432 4.42277 4.44223 4.60054 4.65473 4.69645 4.77769 4.80188 4.87377 4.92843 5.04347 5.13633 5.18421 5.19675 5.25536 5.36077 5.41789 5.55013 5.70049 5.71322 5.99515 6.14191 6.28532 6.63504 6.67899 6.98748 7.30859 8.82570 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022106 B = 0.002866 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.333208 B = 9766.870231 C =10476.049508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.130 4.130 3 C 0.228 3.772 4 H 0.010 0.990 5 C -0.549 4.549 6 H 0.068 0.932 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 0.978 3.022 10 H -0.264 1.264 11 H -0.279 1.279 12 H -0.270 1.270 13 O -0.356 6.356 14 C 0.508 3.492 15 O -0.539 6.539 16 C -0.230 4.230 17 C 0.228 3.772 18 N -0.520 5.520 19 C 0.316 3.684 20 C -0.251 4.251 21 C 0.112 3.888 22 N -0.250 5.250 23 N -0.385 5.385 24 C 0.150 3.850 25 C -0.152 4.152 26 C -0.153 4.153 27 C 0.085 3.915 28 H 0.036 0.964 29 H 0.038 0.962 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.046 0.954 33 H 0.270 0.730 34 H 0.187 0.813 35 H 0.247 0.753 36 H 0.105 0.895 37 H 0.066 0.934 38 H 0.101 0.899 39 H 0.047 0.953 40 H 0.066 0.934 41 H 0.101 0.899 42 H 0.046 0.954 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.151 10.157 18.041 23.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.168 4.168 3 C 0.175 3.825 4 H 0.028 0.972 5 C -0.586 4.586 6 H 0.086 0.914 7 C -0.181 4.181 8 N -0.552 5.552 9 Si 0.801 3.199 10 H -0.189 1.189 11 H -0.204 1.204 12 H -0.195 1.195 13 O -0.272 6.272 14 C 0.354 3.646 15 O -0.431 6.431 16 C -0.236 4.236 17 C 0.057 3.943 18 N -0.235 5.235 19 C 0.076 3.924 20 C -0.261 4.261 21 C -0.087 4.087 22 N -0.061 5.061 23 N -0.175 5.175 24 C 0.050 3.950 25 C -0.210 4.210 26 C -0.210 4.210 27 C 0.057 3.943 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.203 0.797 35 H 0.262 0.738 36 H 0.123 0.877 37 H 0.085 0.915 38 H 0.119 0.881 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.120 0.880 42 H 0.066 0.934 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -11.285 10.741 19.577 25.020 hybrid contribution 0.801 -0.686 -2.103 2.352 sum -10.484 10.056 17.474 22.724 Atomic orbital electron populations 1.21715 0.96295 1.00550 1.00174 1.21877 0.94465 0.98085 1.02393 1.20399 0.94481 0.89250 0.78408 0.97176 1.21309 0.90524 1.39879 1.06897 0.91399 1.25753 1.03966 0.93978 0.94437 1.70005 1.37390 1.37950 1.09841 0.85307 0.78038 0.78703 0.77817 1.18896 1.20413 1.19504 1.86488 1.35002 1.62987 1.42721 1.21042 0.79967 0.75981 0.87646 1.90762 1.55989 1.59981 1.36347 1.19869 0.99700 1.09712 0.94313 1.23209 0.97891 0.88593 0.84572 1.66815 1.14886 1.13465 1.28330 1.19594 0.90984 0.92429 0.89386 1.20625 0.99854 1.10227 0.95350 1.25804 0.97529 0.93559 0.91793 1.76659 0.98015 1.18278 1.13123 1.48849 1.13662 1.44302 1.10706 1.21650 0.98025 0.99035 0.76254 1.22095 0.99638 1.00290 0.98978 1.22095 1.02829 0.92624 1.03481 1.21304 0.91731 0.84799 0.96437 0.94480 0.94320 0.92162 0.89539 0.93502 0.92084 0.79653 0.73755 0.87722 0.91492 0.88051 0.93385 0.91499 0.88042 0.93435 0.81347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.61 8.56 71.98 0.62 -5.00 16 2 C -0.13 -6.45 5.49 30.60 0.17 -6.28 16 3 C 0.23 12.15 2.25 29.85 0.07 12.21 16 4 H 0.01 0.63 7.16 -2.39 -0.02 0.61 16 5 C -0.55 -30.55 8.90 25.60 0.23 -30.32 16 6 H 0.07 3.69 7.81 -2.91 -0.02 3.67 16 7 C 0.02 1.01 5.29 84.65 0.45 1.45 16 8 N -0.91 -51.70 11.30 21.45 0.24 -51.46 16 9 Si 0.98 42.47 29.54 68.60 2.03 44.49 16 10 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 11 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 12 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 13 O -0.36 -16.59 9.06 -56.41 -0.51 -17.11 16 14 C 0.51 21.03 6.35 70.28 0.45 21.48 16 15 O -0.54 -24.51 13.58 19.88 0.27 -24.24 16 16 C -0.23 -7.47 5.89 -20.01 -0.12 -7.59 16 17 C 0.23 6.88 10.76 85.28 0.92 7.79 16 18 N -0.52 -15.10 10.35 -191.92 -1.99 -17.08 16 19 C 0.32 8.47 7.91 134.18 1.06 9.53 16 20 C -0.25 -6.03 6.36 -20.24 -0.13 -6.15 16 21 C 0.11 1.95 12.30 86.94 1.07 3.02 16 22 N -0.25 -5.12 12.20 -53.07 -0.65 -5.77 16 23 N -0.39 -8.69 3.31 -324.45 -1.07 -9.76 16 24 C 0.15 2.56 3.66 44.99 0.16 2.73 16 25 C -0.15 -2.03 9.43 71.98 0.68 -1.36 16 26 C -0.15 -2.06 9.44 71.98 0.68 -1.38 16 27 C 0.08 2.26 9.76 22.93 0.22 2.48 16 28 H 0.04 1.53 6.06 -2.39 -0.01 1.52 16 29 H 0.04 1.76 7.79 -2.39 -0.02 1.74 16 30 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.09 4.69 5.95 -2.39 -0.01 4.68 16 32 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 34 H 0.19 5.36 7.60 -2.91 -0.02 5.34 16 35 H 0.25 1.85 8.06 -2.91 -0.02 1.83 16 36 H 0.10 1.86 8.03 -2.39 -0.02 1.84 16 37 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 40 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 41 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.17 3.91 7.72 -2.91 -0.02 3.89 16 Total: -1.00 -68.18 362.63 5.86 -62.31 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 1.02 Total: 15.99 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: 6.52 Total: 2.63 kcal Atomic # 7 Polarization: -80.61 SS G_CDS: -3.46 Total: -84.07 kcal Atomic # 8 Polarization: -41.11 SS G_CDS: -0.24 Total: -41.35 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.49 kcal Total: -68.18 5.86 -62.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787086848.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.095 kcal (2) G-P(sol) polarization free energy of solvation -68.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds