Wall clock time and date at job start Tue Mar 31 2020 11:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47389 * 2 1 4 4 H 1.08996 * 109.47010 * 304.99983 * 3 2 1 5 5 C 1.50703 * 109.47447 * 184.99776 * 3 2 1 6 6 H 1.07995 * 119.99993 * 240.00372 * 5 3 2 7 7 C 1.37879 * 119.99704 * 59.72273 * 5 3 2 8 8 N 1.31514 * 120.00081 * 0.27883 * 7 5 3 9 9 Si 1.86800 * 119.99715 * 180.27783 * 7 5 3 10 10 H 1.48504 * 109.47318 * 90.00151 * 9 7 5 11 11 H 1.48509 * 109.46938 * 210.00244 * 9 7 5 12 12 H 1.48497 * 109.47193 * 330.00049 * 9 7 5 13 13 O 1.45203 * 109.46979 * 64.99667 * 3 2 1 14 14 C 1.34721 * 117.00327 * 269.99936 * 13 3 2 15 15 O 1.21497 * 119.99984 * 0.02562 * 14 13 3 16 16 C 1.47560 * 120.00415 * 179.97438 * 14 13 3 17 17 C 1.39602 * 120.41155 * 353.74493 * 16 14 13 18 18 C 1.39595 * 117.94309 * 180.02562 * 17 16 14 19 19 C 1.45985 * 134.12485 * 180.02562 * 18 17 16 20 20 C 1.50708 * 126.20413 * 359.92891 * 19 18 17 21 21 N 1.30188 * 107.58908 * 179.97438 * 19 18 17 22 22 N 1.39796 * 110.14185 * 359.97438 * 21 19 18 23 23 C 1.46500 * 125.33750 * 180.02562 * 22 21 19 24 24 C 1.36625 * 109.32549 * 0.02562 * 22 21 19 25 25 N 1.32909 * 133.26478 * 180.02562 * 24 22 21 26 26 C 1.31205 * 121.84904 * 179.66850 * 25 24 22 27 27 C 1.50695 * 119.31527 * 180.31346 * 26 25 24 28 28 H 1.08996 * 109.46938 * 300.00443 * 1 2 3 29 29 H 1.08998 * 109.46883 * 59.99805 * 1 2 3 30 30 H 1.08999 * 109.47497 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47290 * 239.99676 * 2 1 3 32 32 H 1.09004 * 109.47030 * 119.99777 * 2 1 3 33 33 H 0.97000 * 119.99700 * 179.97438 * 8 7 5 34 34 H 1.08001 * 121.02862 * 359.96815 * 17 16 14 35 35 H 1.08996 * 109.46973 * 89.99900 * 20 19 18 36 36 H 1.09000 * 109.46840 * 210.00061 * 20 19 18 37 37 H 1.09002 * 109.47085 * 329.99401 * 20 19 18 38 38 H 1.08998 * 109.47187 * 269.97949 * 23 22 21 39 39 H 1.08995 * 109.47031 * 29.98451 * 23 22 21 40 40 H 1.08999 * 109.46922 * 149.98069 * 23 22 21 41 41 H 1.08993 * 109.47569 * 263.63314 * 27 26 25 42 42 H 1.09001 * 109.47465 * 23.63271 * 27 26 25 43 43 H 1.09004 * 109.46964 * 143.62862 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1472 1.8888 0.6524 7 6 4.1436 0.8733 -1.2252 8 7 3.4065 0.3319 -2.1703 9 14 6.0055 0.8686 -1.3749 10 1 6.5494 -0.3634 -0.7490 11 1 6.3869 0.9047 -2.8097 12 1 6.5606 2.0608 -0.6851 13 8 1.6558 2.0917 1.2407 14 6 0.4684 2.7278 1.2560 15 8 -0.2274 2.7395 0.2601 16 6 0.0122 3.4095 2.4826 17 6 0.7396 3.2922 3.6684 18 6 0.2609 3.9582 4.7980 19 6 0.7213 4.0786 6.1781 20 6 1.9541 3.4399 6.7643 21 7 -0.1267 4.8371 6.8110 22 7 -1.1452 5.2468 5.9455 23 6 -2.2721 6.1087 6.3109 24 6 -0.9249 4.7174 4.7053 25 7 -1.5797 4.7969 3.5515 26 6 -1.1538 4.1878 2.4703 27 6 -1.9375 4.3226 1.1903 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8298 -0.0695 -2.9453 34 1 1.6441 2.7036 3.7108 35 1 2.8024 4.1145 6.6494 36 1 1.7906 3.2386 7.8230 37 1 2.1607 2.5044 6.2444 38 1 -3.1026 5.4936 6.6571 39 1 -1.9667 6.7881 7.1065 40 1 -2.5852 6.6856 5.4407 41 1 -2.5990 3.4637 1.0770 42 1 -2.5308 5.2364 1.2219 43 1 -1.2495 4.3652 0.3458 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787092903.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:44 Heat of formation + Delta-G solvation = -9.057662 kcal Electronic energy + Delta-G solvation = -26626.659564 eV Core-core repulsion = 22865.806730 eV Total energy + Delta-G solvation = -3760.852833 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.84071 -41.34455 -39.42918 -37.50368 -35.66645 -35.36842 -33.50569 -33.11711 -32.74195 -30.46750 -29.41443 -28.68854 -27.12983 -25.34068 -24.60208 -23.60935 -22.62768 -21.46205 -20.87343 -19.38261 -18.75708 -18.10060 -18.00827 -17.28278 -16.99449 -16.78970 -16.52596 -16.13005 -15.18473 -14.79511 -14.73502 -14.69271 -14.48149 -14.38945 -14.21241 -13.81461 -13.71535 -13.51112 -13.36165 -13.27467 -13.19013 -13.16642 -12.91911 -12.77684 -12.53413 -12.48305 -12.13774 -12.08247 -11.69383 -11.58004 -11.42125 -11.12167 -10.79493 -10.67487 -10.46114 -10.04716 -9.43262 -8.22792 -6.38663 -0.48689 -0.41803 0.98392 1.21734 1.45519 1.46745 1.57002 1.59027 1.96621 2.44356 2.54130 2.87901 3.06570 3.07695 3.26526 3.51676 3.66506 3.97082 4.17176 4.26724 4.35855 4.37175 4.44394 4.46073 4.61566 4.63261 4.66639 4.71469 4.74279 4.79344 4.84992 4.90347 4.94179 5.06569 5.14955 5.23609 5.27875 5.38618 5.47133 5.56584 5.67550 5.73344 6.02867 6.16953 6.26492 6.64539 6.66089 7.01529 7.32373 8.83673 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016898 B = 0.003579 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.558594 B = 7820.794719 C = 8877.230100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.130 4.130 3 C 0.228 3.772 4 H 0.012 0.988 5 C -0.547 4.547 6 H 0.067 0.933 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.977 3.023 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.266 1.266 13 O -0.357 6.357 14 C 0.506 3.494 15 O -0.523 6.523 16 C -0.234 4.234 17 C 0.082 3.918 18 C -0.259 4.259 19 C 0.131 3.869 20 C -0.079 4.079 21 N -0.260 5.260 22 N -0.397 5.397 23 C 0.104 3.896 24 C 0.325 3.675 25 N -0.518 5.518 26 C 0.254 3.746 27 C -0.105 4.105 28 H 0.036 0.964 29 H 0.039 0.961 30 H 0.057 0.943 31 H 0.086 0.914 32 H 0.045 0.955 33 H 0.269 0.731 34 H 0.170 0.830 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.107 0.893 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.246 7.543 16.807 19.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.168 4.168 3 C 0.175 3.825 4 H 0.030 0.970 5 C -0.585 4.585 6 H 0.085 0.915 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.801 3.199 10 H -0.193 1.193 11 H -0.206 1.206 12 H -0.190 1.190 13 O -0.273 6.273 14 C 0.352 3.648 15 O -0.415 6.415 16 C -0.240 4.240 17 C 0.055 3.945 18 C -0.268 4.268 19 C -0.048 4.048 20 C -0.138 4.138 21 N -0.074 5.074 22 N -0.186 5.186 23 C -0.035 4.035 24 C 0.084 3.916 25 N -0.235 5.235 26 C 0.105 3.895 27 C -0.162 4.162 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.188 0.812 35 H 0.121 0.879 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.102 0.898 39 H 0.125 0.875 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.626 8.621 17.581 21.397 hybrid contribution 1.385 -0.850 -1.345 2.109 sum -7.241 7.771 16.236 19.402 Atomic orbital electron populations 1.21711 0.96303 1.00460 1.00241 1.21872 0.94437 0.98129 1.02335 1.20393 0.94425 0.89196 0.78443 0.97005 1.21328 0.90541 1.39623 1.06963 0.91461 1.25736 1.03870 0.94018 0.94466 1.70008 1.37263 1.37908 1.09946 0.85267 0.78172 0.79064 0.77430 1.19293 1.20627 1.19044 1.86484 1.35017 1.63042 1.42773 1.20890 0.80050 0.76283 0.87548 1.90727 1.55579 1.58897 1.36319 1.19750 1.01543 1.09262 0.93437 1.21559 0.96028 0.88915 0.88026 1.20552 1.00626 1.08986 0.96679 1.24162 0.97106 0.94571 0.88919 1.20562 0.89753 1.01143 1.02308 1.76669 0.98597 1.15964 1.16164 1.48410 1.23211 1.43785 1.03218 1.22118 0.84495 0.93205 1.03683 1.19454 0.91626 0.92439 0.88082 1.66664 1.33473 1.26498 0.96829 1.21500 0.89090 0.85531 0.93416 1.21098 1.00095 1.03987 0.91022 0.94530 0.94148 0.92352 0.89559 0.93599 0.92137 0.81242 0.87866 0.88349 0.88329 0.89829 0.87489 0.88674 0.88944 0.89113 0.89040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.52 8.56 71.98 0.62 -4.91 16 2 C -0.13 -6.32 5.48 30.59 0.17 -6.15 16 3 C 0.23 11.97 2.25 29.85 0.07 12.04 16 4 H 0.01 0.71 7.16 -2.39 -0.02 0.70 16 5 C -0.55 -29.97 8.90 25.60 0.23 -29.74 16 6 H 0.07 3.60 7.81 -2.91 -0.02 3.58 16 7 C 0.02 1.02 5.29 84.66 0.45 1.46 16 8 N -0.91 -51.01 11.28 21.45 0.24 -50.77 16 9 Si 0.98 41.83 29.54 68.60 2.03 43.85 16 10 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 11 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 12 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 13 O -0.36 -16.40 9.13 -56.31 -0.51 -16.92 16 14 C 0.51 20.91 6.27 70.28 0.44 21.35 16 15 O -0.52 -23.02 10.52 19.85 0.21 -22.81 16 16 C -0.23 -8.00 5.89 -20.01 -0.12 -8.12 16 17 C 0.08 2.42 9.78 22.93 0.22 2.64 16 18 C -0.26 -7.16 6.33 -20.24 -0.13 -7.29 16 19 C 0.13 2.97 7.44 44.81 0.33 3.30 16 20 C -0.08 -1.10 10.48 71.24 0.75 -0.35 16 21 N -0.26 -6.31 12.39 -43.67 -0.54 -6.85 16 22 N -0.40 -9.78 4.03 -366.43 -1.48 -11.25 16 23 C 0.10 1.64 11.43 127.77 1.46 3.10 16 24 C 0.32 9.41 7.96 134.19 1.07 10.48 16 25 N -0.52 -15.61 10.27 -180.05 -1.85 -17.46 16 26 C 0.25 8.04 6.82 43.13 0.29 8.33 16 27 C -0.11 -2.99 8.83 71.23 0.63 -2.36 16 28 H 0.04 1.50 6.06 -2.39 -0.01 1.48 16 29 H 0.04 1.80 7.79 -2.39 -0.02 1.79 16 30 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.09 4.62 5.94 -2.39 -0.01 4.61 16 32 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 33 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 34 H 0.17 4.47 7.70 -2.91 -0.02 4.45 16 35 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 42 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.09 2.99 5.83 -2.38 -0.01 2.97 16 Total: -1.00 -66.89 358.21 5.61 -61.28 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 1.03 Total: 17.14 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 6.48 Total: 3.79 kcal Atomic # 7 Polarization: -82.71 SS G_CDS: -3.63 Total: -86.34 kcal Atomic # 8 Polarization: -39.42 SS G_CDS: -0.31 Total: -39.73 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.85 kcal Total: -66.89 5.61 -61.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787092903.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.224 kcal (2) G-P(sol) polarization free energy of solvation -66.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds