Wall clock time and date at job start Tue Mar 31 2020 11:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46904 * 2 1 4 4 H 1.09001 * 109.47350 * 54.99676 * 3 2 1 5 5 C 1.50700 * 109.46675 * 174.99776 * 3 2 1 6 6 H 1.08001 * 119.99964 * 120.00084 * 5 3 2 7 7 C 1.37877 * 120.00205 * 299.99844 * 5 3 2 8 8 N 1.31509 * 119.99851 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99953 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47657 * 89.99869 * 9 7 5 11 11 H 1.48507 * 109.46872 * 210.00138 * 9 7 5 12 12 H 1.48498 * 109.46989 * 329.99522 * 9 7 5 13 13 O 1.45194 * 109.47224 * 294.99529 * 3 2 1 14 14 C 1.34726 * 116.99886 * 90.00095 * 13 3 2 15 15 O 1.21497 * 120.00314 * 0.02562 * 14 13 3 16 16 C 1.47565 * 120.00155 * 179.97438 * 14 13 3 17 17 C 1.39600 * 120.41379 * 353.72677 * 16 14 13 18 18 C 1.39597 * 117.94349 * 179.78137 * 17 16 14 19 19 C 1.45987 * 134.12380 * 180.16219 * 18 17 16 20 20 C 1.50699 * 126.20327 * 0.30145 * 19 18 17 21 21 N 1.30189 * 107.58675 * 180.28248 * 19 18 17 22 22 N 1.39795 * 110.14493 * 0.02562 * 21 19 18 23 23 C 1.46501 * 125.33915 * 180.02562 * 22 21 19 24 24 C 1.36620 * 109.32534 * 359.97438 * 22 21 19 25 25 N 1.32910 * 133.27002 * 180.02562 * 24 22 21 26 26 C 1.31204 * 121.85519 * 180.02562 * 25 24 22 27 27 C 1.50699 * 119.31759 * 180.02562 * 26 25 24 28 28 H 1.08998 * 109.47370 * 60.00466 * 1 2 3 29 29 H 1.09006 * 109.47278 * 300.00259 * 1 2 3 30 30 H 1.09003 * 109.47560 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46850 * 119.99846 * 2 1 3 32 32 H 1.08994 * 109.46945 * 239.99179 * 2 1 3 33 33 H 0.97006 * 120.00127 * 179.97438 * 8 7 5 34 34 H 1.08002 * 121.02960 * 0.02562 * 17 16 14 35 35 H 1.09000 * 109.47101 * 269.95352 * 20 19 18 36 36 H 1.08994 * 109.47537 * 29.95045 * 20 19 18 37 37 H 1.08996 * 109.46805 * 149.95141 * 20 19 18 38 38 H 1.09005 * 109.46784 * 269.96565 * 23 22 21 39 39 H 1.08989 * 109.47349 * 29.96608 * 23 22 21 40 40 H 1.08994 * 109.47097 * 149.97303 * 23 22 21 41 41 H 1.08997 * 109.46866 * 263.32032 * 27 26 25 42 42 H 1.08995 * 109.47129 * 23.32351 * 27 26 25 43 43 H 1.08998 * 109.47344 * 143.32777 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4442 0.1239 6 1 4.1472 1.8888 -0.6522 7 6 4.1432 0.8783 1.2281 8 7 3.4061 0.3375 2.1734 9 14 6.0048 0.8812 1.3819 10 1 6.4417 2.1141 2.0849 11 1 6.4394 -0.3099 2.1551 12 1 6.6134 0.8414 0.0279 13 8 1.6559 2.0916 -1.2407 14 6 0.4684 2.7277 -1.2561 15 8 -0.2272 2.7401 -0.2599 16 6 0.0128 3.4103 -2.4825 17 6 0.8581 3.5152 -3.5884 18 6 0.3728 4.1674 -4.7233 19 6 0.9300 4.4691 -6.0385 20 6 2.3065 4.0998 -6.5280 21 7 0.0218 5.1147 -6.7118 22 7 -1.1296 5.2757 -5.9353 23 6 -2.3546 5.9535 -6.3667 24 6 -0.9336 4.7008 -4.7116 25 7 -1.6964 4.5779 -3.6301 26 6 -1.2721 3.9673 -2.5491 27 6 -2.1856 3.8604 -1.3553 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 3.8291 -0.0610 2.9501 34 1 1.8554 3.1011 -3.5682 35 1 3.0049 4.9013 -6.2872 36 1 2.6296 3.1787 -6.0432 37 1 2.2807 3.9525 -7.6076 38 1 -2.2921 7.0121 -6.1144 39 1 -2.4705 5.8433 -7.4448 40 1 -3.2125 5.5097 -5.8617 41 1 -1.9575 4.6600 -0.6507 42 1 -3.2218 3.9482 -1.6817 43 1 -2.0379 2.8956 -0.8701 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787092906.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:48 Heat of formation + Delta-G solvation = 7.169717 kcal Electronic energy + Delta-G solvation = -26632.375726 eV Core-core repulsion = 22872.226565 eV Total energy + Delta-G solvation = -3760.149161 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.73785 -39.79320 -38.15148 -35.79198 -34.59189 -33.57132 -32.16959 -31.68784 -31.25369 -29.73203 -27.80893 -27.21411 -26.07972 -23.79651 -23.15058 -22.32806 -21.15111 -19.90234 -19.61531 -17.97792 -17.34291 -16.51935 -16.42353 -16.14432 -15.53374 -15.34332 -15.10234 -14.46255 -13.92829 -13.78438 -13.70880 -13.52412 -13.14827 -12.97245 -12.84530 -12.81315 -12.58476 -12.47625 -12.28656 -11.90761 -11.56140 -11.47810 -11.37673 -11.21017 -11.08096 -10.94858 -10.67734 -10.45039 -10.28166 -9.81276 -9.76816 -9.42466 -9.31569 -8.93156 -8.82347 -8.48128 -8.34085 -6.20592 -4.27672 0.67451 0.80967 1.94686 2.23033 3.03619 3.23092 3.28749 3.31735 3.54651 3.83572 3.90834 4.11338 4.29942 4.31794 4.69354 4.79246 4.96037 5.00763 5.09561 5.11726 5.24935 5.37395 5.38182 5.50985 5.64861 5.79905 5.82374 5.88577 5.95747 6.14426 6.22148 6.28951 6.29340 6.39727 6.47165 6.70362 6.87599 6.95194 7.15103 7.23151 7.29770 7.59459 7.71782 7.80412 7.91757 8.13316 8.59061 8.85515 9.37580 10.86096 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016822 B = 0.003622 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.123303 B = 7729.401595 C = 8954.365761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.223 3.777 4 H 0.049 0.951 5 C -0.522 4.522 6 H 0.068 0.932 7 C 0.064 3.936 8 N -0.887 5.887 9 Si 0.910 3.090 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.352 6.352 14 C 0.508 3.492 15 O -0.507 6.507 16 C -0.213 4.213 17 C 0.071 3.929 18 C -0.247 4.247 19 C 0.125 3.875 20 C -0.079 4.079 21 N -0.250 5.250 22 N -0.397 5.397 23 C 0.114 3.886 24 C 0.339 3.661 25 N -0.516 5.516 26 C 0.257 3.743 27 C -0.112 4.112 28 H 0.032 0.968 29 H 0.054 0.946 30 H 0.032 0.968 31 H 0.109 0.891 32 H 0.041 0.959 33 H 0.266 0.734 34 H 0.159 0.841 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.069 0.931 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.679 7.303 -14.698 18.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.171 3.829 4 H 0.067 0.933 5 C -0.560 4.560 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.737 3.263 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.268 6.268 14 C 0.352 3.648 15 O -0.399 6.399 16 C -0.218 4.218 17 C 0.044 3.956 18 C -0.257 4.257 19 C -0.054 4.054 20 C -0.137 4.137 21 N -0.064 5.064 22 N -0.186 5.186 23 C -0.027 4.027 24 C 0.099 3.901 25 N -0.232 5.232 26 C 0.108 3.892 27 C -0.169 4.169 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.127 0.873 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.177 0.823 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.088 0.912 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -9.103 8.217 -15.483 19.751 hybrid contribution 1.709 -0.626 0.894 2.028 sum -7.394 7.591 -14.589 18.032 Atomic orbital electron populations 1.21869 0.98360 0.99063 1.00766 1.22022 0.92680 0.99311 1.03375 1.20707 0.94998 0.88736 0.78444 0.93290 1.21026 0.89631 1.39040 1.06280 0.91331 1.24870 0.99174 0.94749 0.95083 1.69884 1.35377 1.37757 1.09437 0.86300 0.83947 0.77699 0.78355 1.20426 1.20973 1.19591 1.86512 1.33458 1.62440 1.44359 1.20398 0.81106 0.76632 0.86618 1.90731 1.54739 1.59376 1.35010 1.19940 0.96938 1.09377 0.95559 1.21468 0.99166 0.87037 0.87945 1.20328 0.96637 1.11521 0.97183 1.23563 0.96509 0.95097 0.90239 1.20345 0.88031 1.03081 1.02251 1.76647 0.92653 1.19258 1.17817 1.47978 1.13095 1.49649 1.07923 1.21788 0.82183 0.96909 1.01843 1.19127 0.90673 0.92471 0.87801 1.66620 1.35919 1.22118 0.98585 1.21356 0.90743 0.85409 0.91737 1.21186 0.96811 1.06174 0.92716 0.94936 0.92677 0.94847 0.87316 0.93988 0.92372 0.82345 0.89406 0.89286 0.90020 0.91194 0.89506 0.89180 0.89279 0.91206 0.87101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.56 37.16 0.32 -2.69 16 2 C -0.14 -3.25 5.49 -26.73 -0.15 -3.39 16 3 C 0.22 5.67 2.25 -27.88 -0.06 5.61 16 4 H 0.05 1.38 7.16 -51.93 -0.37 1.00 16 5 C -0.52 -14.03 8.90 -34.44 -0.31 -14.33 16 6 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 7 C 0.06 1.69 5.29 -17.82 -0.09 1.59 16 8 N -0.89 -24.34 11.29 55.43 0.63 -23.71 16 9 Si 0.91 20.46 29.54 -169.99 -5.02 15.43 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 13 O -0.35 -7.90 9.13 -40.56 -0.37 -8.27 16 14 C 0.51 10.24 6.27 34.53 0.22 10.45 16 15 O -0.51 -10.76 10.50 -19.26 -0.20 -10.96 16 16 C -0.21 -3.62 5.89 -104.85 -0.62 -4.23 16 17 C 0.07 1.08 9.78 -38.57 -0.38 0.70 16 18 C -0.25 -3.59 6.33 -105.20 -0.67 -4.25 16 19 C 0.12 1.55 7.44 -80.19 -0.60 0.95 16 20 C -0.08 -0.66 10.48 36.01 0.38 -0.28 16 21 N -0.25 -3.31 12.39 34.84 0.43 -2.88 16 22 N -0.40 -5.25 4.03 -67.17 -0.27 -5.52 16 23 C 0.11 1.01 11.43 59.85 0.68 1.70 16 24 C 0.34 5.13 7.96 -156.10 -1.24 3.88 16 25 N -0.52 -8.00 10.27 -8.26 -0.08 -8.08 16 26 C 0.26 4.08 6.82 -82.12 -0.56 3.52 16 27 C -0.11 -1.59 8.84 36.01 0.32 -1.27 16 28 H 0.03 0.65 6.06 -51.93 -0.31 0.34 16 29 H 0.05 1.20 7.79 -51.93 -0.40 0.79 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.11 2.83 5.95 -51.93 -0.31 2.52 16 32 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 34 H 0.16 2.17 7.70 -52.49 -0.40 1.76 16 35 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.09 0.61 8.14 -51.94 -0.42 0.19 16 40 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.11 1.73 5.81 -51.93 -0.30 1.43 16 LS Contribution 358.22 15.07 5.40 5.40 Total: -1.00 -30.78 358.22 -8.13 -38.91 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -5.88 Total: 1.74 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -2.76 Total: -2.04 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: 0.70 Total: -40.20 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.57 Total: -19.24 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.78 -8.13 -38.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787092906.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.076 kcal (2) G-P(sol) polarization free energy of solvation -30.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds