Wall clock time and date at job start Tue Mar 31 2020 11:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46904 * 2 1 4 4 H 1.09001 * 109.47350 * 54.99676 * 3 2 1 5 5 C 1.50700 * 109.46675 * 174.99776 * 3 2 1 6 6 H 1.08001 * 119.99964 * 120.00084 * 5 3 2 7 7 C 1.37877 * 120.00205 * 299.99844 * 5 3 2 8 8 N 1.31509 * 119.99851 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99953 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47657 * 89.99869 * 9 7 5 11 11 H 1.48507 * 109.46872 * 210.00138 * 9 7 5 12 12 H 1.48498 * 109.46989 * 329.99522 * 9 7 5 13 13 O 1.45194 * 109.47224 * 294.99529 * 3 2 1 14 14 C 1.34726 * 116.99886 * 90.00095 * 13 3 2 15 15 O 1.21497 * 120.00314 * 0.02562 * 14 13 3 16 16 C 1.47565 * 120.00155 * 179.97438 * 14 13 3 17 17 C 1.39600 * 120.41379 * 353.72677 * 16 14 13 18 18 C 1.39597 * 117.94349 * 179.78137 * 17 16 14 19 19 C 1.45987 * 134.12380 * 180.16219 * 18 17 16 20 20 C 1.50699 * 126.20327 * 0.30145 * 19 18 17 21 21 N 1.30189 * 107.58675 * 180.28248 * 19 18 17 22 22 N 1.39795 * 110.14493 * 0.02562 * 21 19 18 23 23 C 1.46501 * 125.33915 * 180.02562 * 22 21 19 24 24 C 1.36620 * 109.32534 * 359.97438 * 22 21 19 25 25 N 1.32910 * 133.27002 * 180.02562 * 24 22 21 26 26 C 1.31204 * 121.85519 * 180.02562 * 25 24 22 27 27 C 1.50699 * 119.31759 * 180.02562 * 26 25 24 28 28 H 1.08998 * 109.47370 * 60.00466 * 1 2 3 29 29 H 1.09006 * 109.47278 * 300.00259 * 1 2 3 30 30 H 1.09003 * 109.47560 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46850 * 119.99846 * 2 1 3 32 32 H 1.08994 * 109.46945 * 239.99179 * 2 1 3 33 33 H 0.97006 * 120.00127 * 179.97438 * 8 7 5 34 34 H 1.08002 * 121.02960 * 0.02562 * 17 16 14 35 35 H 1.09000 * 109.47101 * 269.95352 * 20 19 18 36 36 H 1.08994 * 109.47537 * 29.95045 * 20 19 18 37 37 H 1.08996 * 109.46805 * 149.95141 * 20 19 18 38 38 H 1.09005 * 109.46784 * 269.96565 * 23 22 21 39 39 H 1.08989 * 109.47349 * 29.96608 * 23 22 21 40 40 H 1.08994 * 109.47097 * 149.97303 * 23 22 21 41 41 H 1.08997 * 109.46866 * 263.32032 * 27 26 25 42 42 H 1.08995 * 109.47129 * 23.32351 * 27 26 25 43 43 H 1.08998 * 109.47344 * 143.32777 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4442 0.1239 6 1 4.1472 1.8888 -0.6522 7 6 4.1432 0.8783 1.2281 8 7 3.4061 0.3375 2.1734 9 14 6.0048 0.8812 1.3819 10 1 6.4417 2.1141 2.0849 11 1 6.4394 -0.3099 2.1551 12 1 6.6134 0.8414 0.0279 13 8 1.6559 2.0916 -1.2407 14 6 0.4684 2.7277 -1.2561 15 8 -0.2272 2.7401 -0.2599 16 6 0.0128 3.4103 -2.4825 17 6 0.8581 3.5152 -3.5884 18 6 0.3728 4.1674 -4.7233 19 6 0.9300 4.4691 -6.0385 20 6 2.3065 4.0998 -6.5280 21 7 0.0218 5.1147 -6.7118 22 7 -1.1296 5.2757 -5.9353 23 6 -2.3546 5.9535 -6.3667 24 6 -0.9336 4.7008 -4.7116 25 7 -1.6964 4.5779 -3.6301 26 6 -1.2721 3.9673 -2.5491 27 6 -2.1856 3.8604 -1.3553 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 3.8291 -0.0610 2.9501 34 1 1.8554 3.1011 -3.5682 35 1 3.0049 4.9013 -6.2872 36 1 2.6296 3.1787 -6.0432 37 1 2.2807 3.9525 -7.6076 38 1 -2.2921 7.0121 -6.1144 39 1 -2.4705 5.8433 -7.4448 40 1 -3.2125 5.5097 -5.8617 41 1 -1.9575 4.6600 -0.6507 42 1 -3.2218 3.9482 -1.6817 43 1 -2.0379 2.8956 -0.8701 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787092906.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:48 Heat of formation + Delta-G solvation = -9.036891 kcal Electronic energy + Delta-G solvation = -26633.078498 eV Core-core repulsion = 22872.226565 eV Total energy + Delta-G solvation = -3760.851933 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.84082 -41.34714 -39.42714 -37.50269 -35.66811 -35.36758 -33.51435 -33.09847 -32.75166 -30.46881 -29.39803 -28.70040 -27.12986 -25.34434 -24.60054 -23.59924 -22.63911 -21.46154 -20.87323 -19.38383 -18.77445 -18.05861 -17.99920 -17.29421 -16.97283 -16.84292 -16.53280 -16.12658 -15.13444 -14.83640 -14.73183 -14.69079 -14.48280 -14.39722 -14.13612 -13.94355 -13.69731 -13.47814 -13.29202 -13.28166 -13.16572 -13.15222 -13.04505 -12.74006 -12.54921 -12.49425 -12.12646 -12.06707 -11.68913 -11.58614 -11.37153 -11.14121 -10.77561 -10.68460 -10.47725 -10.04879 -9.43297 -8.22669 -6.38505 -0.48794 -0.41798 0.98372 1.21656 1.45693 1.46751 1.57492 1.58964 1.96534 2.44357 2.54141 2.87890 3.06799 3.07756 3.26532 3.51734 3.66542 3.97103 4.17040 4.26770 4.35754 4.37464 4.44556 4.46170 4.61601 4.62951 4.66788 4.71512 4.74409 4.79103 4.85083 4.90607 4.94169 5.06718 5.15191 5.24015 5.27602 5.38601 5.47309 5.56767 5.67712 5.73308 6.02792 6.16962 6.26464 6.64587 6.66180 7.01527 7.32495 8.83876 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016822 B = 0.003622 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.123303 B = 7729.401595 C = 8954.365761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.130 4.130 3 C 0.228 3.772 4 H 0.012 0.988 5 C -0.547 4.547 6 H 0.068 0.932 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 0.977 3.023 10 H -0.275 1.275 11 H -0.278 1.278 12 H -0.261 1.261 13 O -0.357 6.357 14 C 0.506 3.494 15 O -0.523 6.523 16 C -0.234 4.234 17 C 0.082 3.918 18 C -0.259 4.259 19 C 0.131 3.869 20 C -0.080 4.080 21 N -0.260 5.260 22 N -0.397 5.397 23 C 0.104 3.896 24 C 0.325 3.675 25 N -0.518 5.518 26 C 0.254 3.746 27 C -0.106 4.106 28 H 0.036 0.964 29 H 0.040 0.960 30 H 0.058 0.942 31 H 0.086 0.914 32 H 0.044 0.956 33 H 0.269 0.731 34 H 0.170 0.830 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.107 0.893 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.147 7.783 -16.729 19.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.168 4.168 3 C 0.175 3.825 4 H 0.030 0.970 5 C -0.584 4.584 6 H 0.086 0.914 7 C -0.181 4.181 8 N -0.552 5.552 9 Si 0.801 3.199 10 H -0.200 1.200 11 H -0.204 1.204 12 H -0.185 1.185 13 O -0.273 6.273 14 C 0.352 3.648 15 O -0.415 6.415 16 C -0.240 4.240 17 C 0.055 3.945 18 C -0.268 4.268 19 C -0.048 4.048 20 C -0.138 4.138 21 N -0.074 5.074 22 N -0.186 5.186 23 C -0.035 4.035 24 C 0.084 3.916 25 N -0.235 5.235 26 C 0.105 3.895 27 C -0.163 4.163 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.104 0.896 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.187 0.813 35 H 0.121 0.879 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.101 0.899 39 H 0.125 0.875 40 H 0.114 0.886 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.599 8.720 -17.557 21.406 hybrid contribution 1.468 -0.685 1.413 2.149 sum -7.131 8.034 -16.143 19.391 Atomic orbital electron populations 1.21721 0.96260 1.00516 1.00264 1.21869 0.94511 0.98133 1.02281 1.20392 0.94459 0.89188 0.78429 0.97024 1.21332 0.90534 1.39737 1.06836 0.91374 1.25742 1.03886 0.94018 0.94489 1.70008 1.37291 1.38021 1.09832 0.85266 0.78156 0.77801 0.78715 1.20035 1.20354 1.18550 1.86485 1.34970 1.63056 1.42790 1.20892 0.80104 0.76151 0.87619 1.90725 1.54879 1.59954 1.35981 1.19752 0.98125 1.11234 0.94890 1.21561 0.99237 0.86231 0.87519 1.20554 0.96858 1.11531 0.97905 1.24158 0.97720 0.93894 0.88986 1.20559 0.85909 1.03974 1.03335 1.76668 0.92894 1.19830 1.17999 1.48409 1.14042 1.49004 1.07156 1.22118 0.80818 0.97340 1.03224 1.19454 0.91095 0.92685 0.88358 1.66665 1.35890 1.22285 0.98617 1.21505 0.90501 0.85187 0.92320 1.21113 0.97809 1.05177 0.92183 0.94497 0.94058 0.92323 0.89582 0.93673 0.92148 0.81279 0.87874 0.88352 0.88338 0.89886 0.87465 0.88630 0.89162 0.89059 0.88763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.52 8.56 71.98 0.62 -4.90 16 2 C -0.13 -6.34 5.49 30.59 0.17 -6.17 16 3 C 0.23 11.96 2.25 29.85 0.07 12.03 16 4 H 0.01 0.70 7.16 -2.39 -0.02 0.69 16 5 C -0.55 -29.90 8.90 25.60 0.23 -29.68 16 6 H 0.07 3.63 7.81 -2.91 -0.02 3.60 16 7 C 0.02 0.99 5.29 84.66 0.45 1.44 16 8 N -0.91 -51.05 11.29 21.45 0.24 -50.81 16 9 Si 0.98 41.77 29.54 68.60 2.03 43.79 16 10 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 11 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 12 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 13 O -0.36 -16.39 9.13 -56.37 -0.51 -16.91 16 14 C 0.51 20.90 6.27 70.28 0.44 21.34 16 15 O -0.52 -23.01 10.50 19.84 0.21 -22.80 16 16 C -0.23 -8.00 5.89 -20.01 -0.12 -8.12 16 17 C 0.08 2.42 9.78 22.93 0.22 2.64 16 18 C -0.26 -7.17 6.33 -20.24 -0.13 -7.30 16 19 C 0.13 2.98 7.44 44.81 0.33 3.31 16 20 C -0.08 -1.11 10.48 71.24 0.75 -0.36 16 21 N -0.26 -6.32 12.39 -43.68 -0.54 -6.86 16 22 N -0.40 -9.77 4.03 -366.43 -1.48 -11.25 16 23 C 0.10 1.64 11.43 127.77 1.46 3.10 16 24 C 0.32 9.41 7.96 134.20 1.07 10.48 16 25 N -0.52 -15.58 10.27 -180.04 -1.85 -17.43 16 26 C 0.25 8.03 6.82 43.13 0.29 8.32 16 27 C -0.11 -3.00 8.84 71.24 0.63 -2.37 16 28 H 0.04 1.50 6.06 -2.39 -0.01 1.49 16 29 H 0.04 1.83 7.79 -2.38 -0.02 1.81 16 30 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.09 4.61 5.95 -2.38 -0.01 4.60 16 32 H 0.04 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.27 14.14 8.31 -92.70 -0.77 13.37 16 34 H 0.17 4.50 7.70 -2.91 -0.02 4.48 16 35 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 39 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 42 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.09 3.02 5.81 -2.39 -0.01 3.00 16 Total: -1.00 -66.83 358.22 5.61 -61.23 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: 1.03 Total: 17.28 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: 6.48 Total: 3.76 kcal Atomic # 7 Polarization: -82.73 SS G_CDS: -3.62 Total: -86.35 kcal Atomic # 8 Polarization: -39.41 SS G_CDS: -0.31 Total: -39.71 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.79 kcal Total: -66.83 5.61 -61.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787092906.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.190 kcal (2) G-P(sol) polarization free energy of solvation -66.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds