Wall clock time and date at job start Tue Mar 31 2020 11:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47448 * 2 1 4 4 N 1.46503 * 109.47378 * 120.00699 * 2 1 3 5 5 C 1.46500 * 119.99692 * 299.99469 * 4 2 1 6 6 C 1.50698 * 109.47273 * 270.00399 * 5 4 2 7 7 H 1.08002 * 120.00100 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00160 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00184 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 119.99873 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.46968 * 90.00231 * 10 8 6 12 12 H 1.48493 * 109.47191 * 210.00476 * 10 8 6 13 13 H 1.48501 * 109.46920 * 330.00585 * 10 8 6 14 14 C 1.34770 * 120.00196 * 120.00183 * 4 2 1 15 15 O 1.21284 * 119.99666 * 180.02562 * 14 4 2 16 16 C 1.50699 * 120.00358 * 359.97438 * 14 4 2 17 17 H 1.09001 * 110.88547 * 58.82493 * 16 14 4 18 18 C 1.54737 * 110.97299 * 295.00713 * 16 14 4 19 19 C 1.51693 * 102.55183 * 217.65979 * 18 16 14 20 20 C 1.47642 * 125.86718 * 195.39461 * 19 18 16 21 21 C 1.40038 * 120.56386 * 180.02562 * 20 19 18 22 22 C 1.38353 * 118.28694 * 179.97438 * 21 20 19 23 23 C 1.38339 * 119.31175 * 0.02562 * 22 21 20 24 24 N 1.31915 * 121.09153 * 0.02562 * 23 22 21 25 25 C 1.31701 * 121.87926 * 359.68387 * 24 23 22 26 26 N 1.29080 * 108.26567 * 15.38988 * 19 18 16 27 27 O 1.41396 * 112.87481 * 0.32229 * 26 19 18 28 28 H 1.09002 * 109.47121 * 299.99797 * 1 2 3 29 29 H 1.08998 * 109.47256 * 59.99582 * 1 2 3 30 30 H 1.08999 * 109.47662 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47121 * 240.00202 * 2 1 3 32 32 H 1.09007 * 109.47469 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47233 * 300.00432 * 3 2 1 34 34 H 1.09005 * 109.47065 * 60.00453 * 3 2 1 35 35 H 1.08999 * 109.46811 * 29.99824 * 5 4 2 36 36 H 1.08994 * 109.47297 * 149.99824 * 5 4 2 37 37 H 0.97002 * 120.00024 * 179.97438 * 9 8 6 38 38 H 1.08997 * 110.79689 * 335.92667 * 18 16 14 39 39 H 1.09005 * 110.79132 * 99.39506 * 18 16 14 40 40 H 1.08003 * 120.85590 * 359.97438 * 21 20 19 41 41 H 1.08001 * 120.34104 * 180.02562 * 22 21 20 42 42 H 1.08001 * 119.45822 * 179.97438 * 23 22 21 43 43 H 1.08005 * 119.72171 * 180.31017 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6908 1.1961 5 6 1.6645 -0.1903 2.5267 6 6 2.7032 0.8016 2.9829 7 1 3.5432 1.0356 2.3457 8 6 2.5818 1.4098 4.2144 9 7 3.4886 2.2750 4.6127 10 14 1.1294 1.0047 5.3170 11 1 1.4785 -0.1413 6.1945 12 1 0.7984 2.1860 6.1536 13 1 -0.0435 0.6472 4.4792 14 6 2.7932 -1.7865 1.0723 15 8 3.1971 -2.3585 2.0626 16 6 3.1569 -2.3016 -0.2964 17 1 3.6855 -1.5404 -0.8703 18 6 1.9010 -2.7941 -1.0545 19 6 2.4189 -4.0138 -1.7929 20 6 1.7452 -4.6960 -2.9156 21 6 2.3259 -5.8189 -3.5181 22 6 1.6535 -6.4219 -4.5662 23 6 0.4412 -5.9012 -4.9821 24 7 -0.0817 -4.8411 -4.3964 25 6 0.5167 -4.2355 -3.3916 26 7 3.5499 -4.3527 -1.2710 27 8 3.9363 -3.5111 -0.2025 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1301 1.4424 -0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 0.6905 0.2972 2.4843 36 1 1.6238 -1.0228 3.2291 37 1 3.4030 2.7032 5.4789 38 1 1.1112 -3.0710 -0.3562 39 1 1.5508 -2.0369 -1.7560 40 1 3.2741 -6.2044 -3.1734 41 1 2.0708 -7.2901 -5.0546 42 1 -0.0854 -6.3697 -5.8003 43 1 0.0546 -3.3730 -2.9344 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000790556299.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:37 Heat of formation + Delta-G solvation = 33.800871 kcal Electronic energy + Delta-G solvation = -26615.347985 eV Core-core repulsion = 22856.353637 eV Total energy + Delta-G solvation = -3758.994348 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.01364 -40.22148 -38.71826 -36.24201 -34.31728 -32.90152 -32.63140 -31.29574 -31.11430 -30.81297 -28.00926 -26.92214 -25.04070 -24.50209 -23.52698 -22.36270 -21.38797 -20.51981 -18.63002 -17.72910 -17.40500 -16.95001 -16.75330 -16.60801 -15.67719 -15.51725 -15.16417 -14.62750 -14.42920 -14.13128 -13.93410 -13.75232 -13.54964 -13.48427 -13.21089 -12.98617 -12.70700 -12.50681 -12.31048 -12.11215 -11.87239 -11.80920 -11.50830 -11.11280 -11.04906 -10.93281 -10.65063 -10.56756 -10.41604 -10.16368 -10.07832 -9.99125 -9.52295 -9.25342 -8.95860 -8.61217 -7.87719 -6.11155 -4.09621 0.13484 0.77731 1.85764 2.60035 3.04591 3.25968 3.31439 3.34665 3.38557 3.45722 3.69237 3.98817 4.19152 4.29632 4.36533 4.39475 4.46524 4.58689 4.65068 4.85184 4.89248 5.00586 5.13529 5.21396 5.22856 5.33008 5.37707 5.44975 5.48516 5.65142 5.70736 5.82375 5.94960 6.11036 6.13442 6.20628 6.40351 6.65007 6.86037 6.90933 7.07063 7.22411 7.44195 7.56332 8.05546 8.42055 8.74956 8.93040 9.48416 11.01871 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023170 B = 0.003196 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.157560 B = 8759.668786 C = 9232.779483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.126 3.874 3 C -0.158 4.158 4 N -0.580 5.580 5 C 0.217 3.783 6 C -0.525 4.525 7 H 0.077 0.923 8 C 0.073 3.927 9 N -0.895 5.895 10 Si 0.873 3.127 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.513 3.487 15 O -0.512 6.512 16 C 0.027 3.973 17 H 0.112 0.888 18 C -0.139 4.139 19 C 0.118 3.882 20 C -0.087 4.087 21 C -0.038 4.038 22 C -0.173 4.173 23 C 0.112 3.888 24 N -0.482 5.482 25 C 0.135 3.865 26 N -0.277 5.277 27 O -0.155 6.155 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.083 0.917 35 H 0.035 0.965 36 H 0.036 0.964 37 H 0.265 0.735 38 H 0.112 0.888 39 H 0.115 0.885 40 H 0.145 0.855 41 H 0.142 0.858 42 H 0.161 0.839 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.543 -11.786 -21.281 25.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.022 3.978 3 C -0.216 4.216 4 N -0.314 5.314 5 C 0.097 3.903 6 C -0.564 4.564 7 H 0.095 0.905 8 C -0.129 4.129 9 N -0.534 5.534 10 Si 0.700 3.300 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.191 1.191 14 C 0.297 3.703 15 O -0.387 6.387 16 C -0.035 4.035 17 H 0.129 0.871 18 C -0.179 4.179 19 C -0.072 4.072 20 C -0.090 4.090 21 C -0.066 4.066 22 C -0.193 4.193 23 C -0.045 4.045 24 N -0.190 5.190 25 C -0.025 4.025 26 N -0.015 5.015 27 O -0.175 6.175 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.075 0.925 38 H 0.130 0.870 39 H 0.133 0.867 40 H 0.163 0.837 41 H 0.160 0.840 42 H 0.178 0.822 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -8.047 -12.368 -20.687 25.410 hybrid contribution -0.334 0.337 1.069 1.170 sum -8.381 -12.031 -19.618 24.492 Atomic orbital electron populations 1.22206 0.95184 1.01936 1.02962 1.21213 0.94375 0.94774 0.87433 1.22150 1.01891 0.94950 1.02622 1.47974 1.49066 1.25926 1.08422 1.19687 0.96548 0.95254 0.78824 1.21304 1.09304 1.22615 1.03164 0.90452 1.24843 0.96060 0.94727 0.97312 1.69887 1.34495 1.28224 1.20766 0.86909 0.83341 0.78318 0.81462 1.19933 1.21084 1.19105 1.19644 0.80057 0.81658 0.88972 1.90744 1.51813 1.57644 1.38467 1.23650 0.91885 0.90674 0.97304 0.87067 1.23127 1.00051 0.95490 0.99182 1.23996 0.92488 0.95909 0.94815 1.18836 0.96773 0.97573 0.95821 1.21851 0.99471 0.92236 0.93015 1.22158 0.96875 1.02014 0.98258 1.22994 0.92643 0.91414 0.97438 1.67766 1.34115 1.08787 1.08336 1.23004 0.90127 0.97891 0.91507 1.78378 1.12038 1.12975 0.98159 1.91419 1.58006 1.25216 1.42895 0.91243 0.91642 0.92760 0.90666 0.92313 0.92976 0.89770 0.94701 0.94627 0.92547 0.87004 0.86709 0.83708 0.83976 0.82179 0.81852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 9.17 37.15 0.34 -1.59 16 2 C 0.13 1.78 2.71 -67.93 -0.18 1.59 16 3 C -0.16 -2.42 8.47 37.16 0.31 -2.10 16 4 N -0.58 -11.13 2.39 -167.48 -0.40 -11.53 16 5 C 0.22 5.03 3.66 -5.19 -0.02 5.01 16 6 C -0.53 -14.41 8.38 -34.44 -0.29 -14.70 16 7 H 0.08 2.33 7.87 -52.49 -0.41 1.92 16 8 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 9 N -0.90 -27.07 13.96 55.43 0.77 -26.30 16 10 Si 0.87 21.10 27.47 -169.99 -4.67 16.43 16 11 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 14 C 0.51 10.40 7.05 -10.99 -0.08 10.33 16 15 O -0.51 -13.06 16.17 -13.30 -0.21 -13.27 16 16 C 0.03 0.42 3.21 -26.97 -0.09 0.34 16 17 H 0.11 1.52 7.76 -51.93 -0.40 1.11 16 18 C -0.14 -1.54 4.71 -26.48 -0.12 -1.66 16 19 C 0.12 1.37 7.17 -79.42 -0.57 0.80 16 20 C -0.09 -0.81 5.89 -104.89 -0.62 -1.42 16 21 C -0.04 -0.31 9.82 -38.86 -0.38 -0.69 16 22 C -0.17 -1.06 10.10 -39.50 -0.40 -1.46 16 23 C 0.11 0.74 11.17 -17.48 -0.20 0.54 16 24 N -0.48 -4.20 10.35 -12.90 -0.13 -4.34 16 25 C 0.13 1.11 10.79 -17.11 -0.18 0.93 16 26 N -0.28 -4.14 12.19 35.30 0.43 -3.71 16 27 O -0.15 -2.83 11.82 -30.22 -0.36 -3.19 16 28 H 0.07 0.95 6.66 -51.93 -0.35 0.60 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.83 4.12 -51.93 -0.21 0.62 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.08 1.54 6.92 -51.93 -0.36 1.18 16 35 H 0.04 0.76 5.49 -51.93 -0.28 0.48 16 36 H 0.04 0.90 6.85 -51.93 -0.36 0.55 16 37 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 38 H 0.11 1.24 7.90 -51.93 -0.41 0.83 16 39 H 0.11 0.85 6.61 -51.93 -0.34 0.51 16 40 H 0.15 1.15 7.92 -52.48 -0.42 0.73 16 41 H 0.14 0.48 8.06 -52.49 -0.42 0.05 16 42 H 0.16 0.58 8.06 -52.49 -0.42 0.16 16 43 H 0.16 0.99 7.40 -52.48 -0.39 0.60 16 LS Contribution 355.36 15.07 5.36 5.36 Total: -1.00 -36.00 355.36 -7.42 -43.43 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -5.64 Total: -0.77 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -2.57 Total: -2.12 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: 0.67 Total: -45.87 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.57 Total: -16.46 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.43 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -36.00 -7.42 -43.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790556299.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.227 kcal (2) G-P(sol) polarization free energy of solvation -36.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds