Wall clock time and date at job start Tue Mar 31 2020 11:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47448 * 2 1 4 4 N 1.46503 * 109.47378 * 120.00699 * 2 1 3 5 5 C 1.46500 * 119.99692 * 299.99469 * 4 2 1 6 6 C 1.50698 * 109.47273 * 270.00399 * 5 4 2 7 7 H 1.08002 * 120.00100 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00160 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00184 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 119.99873 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.46968 * 90.00231 * 10 8 6 12 12 H 1.48493 * 109.47191 * 210.00476 * 10 8 6 13 13 H 1.48501 * 109.46920 * 330.00585 * 10 8 6 14 14 C 1.34770 * 120.00196 * 120.00183 * 4 2 1 15 15 O 1.21284 * 119.99666 * 180.02562 * 14 4 2 16 16 C 1.50699 * 120.00358 * 359.97438 * 14 4 2 17 17 H 1.09001 * 110.88547 * 58.82493 * 16 14 4 18 18 C 1.54737 * 110.97299 * 295.00713 * 16 14 4 19 19 C 1.51693 * 102.55183 * 217.65979 * 18 16 14 20 20 C 1.47642 * 125.86718 * 195.39461 * 19 18 16 21 21 C 1.40038 * 120.56386 * 180.02562 * 20 19 18 22 22 C 1.38353 * 118.28694 * 179.97438 * 21 20 19 23 23 C 1.38339 * 119.31175 * 0.02562 * 22 21 20 24 24 N 1.31915 * 121.09153 * 0.02562 * 23 22 21 25 25 C 1.31701 * 121.87926 * 359.68387 * 24 23 22 26 26 N 1.29080 * 108.26567 * 15.38988 * 19 18 16 27 27 O 1.41396 * 112.87481 * 0.32229 * 26 19 18 28 28 H 1.09002 * 109.47121 * 299.99797 * 1 2 3 29 29 H 1.08998 * 109.47256 * 59.99582 * 1 2 3 30 30 H 1.08999 * 109.47662 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47121 * 240.00202 * 2 1 3 32 32 H 1.09007 * 109.47469 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47233 * 300.00432 * 3 2 1 34 34 H 1.09005 * 109.47065 * 60.00453 * 3 2 1 35 35 H 1.08999 * 109.46811 * 29.99824 * 5 4 2 36 36 H 1.08994 * 109.47297 * 149.99824 * 5 4 2 37 37 H 0.97002 * 120.00024 * 179.97438 * 9 8 6 38 38 H 1.08997 * 110.79689 * 335.92667 * 18 16 14 39 39 H 1.09005 * 110.79132 * 99.39506 * 18 16 14 40 40 H 1.08003 * 120.85590 * 359.97438 * 21 20 19 41 41 H 1.08001 * 120.34104 * 180.02562 * 22 21 20 42 42 H 1.08001 * 119.45822 * 179.97438 * 23 22 21 43 43 H 1.08005 * 119.72171 * 180.31017 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6908 1.1961 5 6 1.6645 -0.1903 2.5267 6 6 2.7032 0.8016 2.9829 7 1 3.5432 1.0356 2.3457 8 6 2.5818 1.4098 4.2144 9 7 3.4886 2.2750 4.6127 10 14 1.1294 1.0047 5.3170 11 1 1.4785 -0.1413 6.1945 12 1 0.7984 2.1860 6.1536 13 1 -0.0435 0.6472 4.4792 14 6 2.7932 -1.7865 1.0723 15 8 3.1971 -2.3585 2.0626 16 6 3.1569 -2.3016 -0.2964 17 1 3.6855 -1.5404 -0.8703 18 6 1.9010 -2.7941 -1.0545 19 6 2.4189 -4.0138 -1.7929 20 6 1.7452 -4.6960 -2.9156 21 6 2.3259 -5.8189 -3.5181 22 6 1.6535 -6.4219 -4.5662 23 6 0.4412 -5.9012 -4.9821 24 7 -0.0817 -4.8411 -4.3964 25 6 0.5167 -4.2355 -3.3916 26 7 3.5499 -4.3527 -1.2710 27 8 3.9363 -3.5111 -0.2025 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1301 1.4424 -0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 0.6905 0.2972 2.4843 36 1 1.6238 -1.0228 3.2291 37 1 3.4030 2.7032 5.4789 38 1 1.1112 -3.0710 -0.3562 39 1 1.5508 -2.0369 -1.7560 40 1 3.2741 -6.2044 -3.1734 41 1 2.0708 -7.2901 -5.0546 42 1 -0.0854 -6.3697 -5.8003 43 1 0.0546 -3.3730 -2.9344 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000790556299.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:36 Heat of formation + Delta-G solvation = 8.674023 kcal Electronic energy + Delta-G solvation = -26616.437567 eV Core-core repulsion = 22856.353637 eV Total energy + Delta-G solvation = -3760.083930 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.06924 -41.02495 -40.02845 -37.75917 -35.21819 -34.93441 -33.27005 -32.66897 -32.46097 -31.56065 -29.77844 -28.00900 -26.20136 -25.20110 -24.47239 -23.89811 -22.68064 -21.40698 -19.98240 -19.09949 -18.81039 -18.24592 -17.59626 -17.48489 -17.00134 -16.56494 -16.54316 -15.82722 -15.79410 -15.08094 -15.03558 -14.91471 -14.57489 -14.40950 -14.35047 -14.11689 -14.08067 -13.90380 -13.61282 -13.38762 -13.03169 -12.92502 -12.85680 -12.67907 -12.42593 -12.28702 -12.03036 -11.90771 -11.68417 -11.62282 -11.45187 -10.84056 -10.80978 -10.60572 -10.54637 -9.85221 -9.53896 -8.31685 -6.34893 -0.53371 0.24313 1.06632 1.30367 1.35804 1.36602 1.43076 1.59962 2.21612 2.30971 2.71505 2.82929 3.02370 3.17000 3.20724 3.41638 3.57380 3.75233 3.83726 3.90740 3.96061 4.13332 4.20291 4.24883 4.34768 4.40530 4.48619 4.65640 4.72180 4.79722 4.87989 4.91064 4.92330 5.04838 5.06834 5.10649 5.16208 5.42150 5.47012 5.58450 5.62265 5.63219 6.07382 6.25002 6.54704 6.66460 6.90841 7.14697 7.30136 8.84973 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023170 B = 0.003196 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.157560 B = 8759.668786 C = 9232.779483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.118 3.882 3 C -0.155 4.155 4 N -0.580 5.580 5 C 0.226 3.774 6 C -0.522 4.522 7 H 0.033 0.967 8 C 0.010 3.990 9 N -0.946 5.946 10 Si 0.940 3.060 11 H -0.282 1.282 12 H -0.277 1.277 13 H -0.233 1.233 14 C 0.504 3.496 15 O -0.581 6.581 16 C 0.030 3.970 17 H 0.130 0.870 18 C -0.132 4.132 19 C 0.150 3.850 20 C -0.110 4.110 21 C -0.048 4.048 22 C -0.167 4.167 23 C 0.117 3.883 24 N -0.504 5.504 25 C 0.141 3.859 26 N -0.314 5.314 27 O -0.208 6.208 28 H 0.046 0.954 29 H 0.105 0.895 30 H 0.072 0.928 31 H 0.115 0.885 32 H 0.029 0.971 33 H 0.096 0.904 34 H 0.046 0.954 35 H 0.060 0.940 36 H 0.013 0.987 37 H 0.266 0.734 38 H 0.118 0.882 39 H 0.164 0.836 40 H 0.140 0.860 41 H 0.171 0.829 42 H 0.191 0.809 43 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.292 -12.803 -24.865 30.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.016 3.984 3 C -0.213 4.213 4 N -0.311 5.311 5 C 0.104 3.896 6 C -0.561 4.561 7 H 0.051 0.949 8 C -0.188 4.188 9 N -0.586 5.586 10 Si 0.763 3.237 11 H -0.208 1.208 12 H -0.202 1.202 13 H -0.156 1.156 14 C 0.290 3.710 15 O -0.460 6.460 16 C -0.032 4.032 17 H 0.147 0.853 18 C -0.171 4.171 19 C -0.040 4.040 20 C -0.114 4.114 21 C -0.075 4.075 22 C -0.187 4.187 23 C -0.039 4.039 24 N -0.212 5.212 25 C -0.018 4.018 26 N -0.057 5.057 27 O -0.225 6.225 28 H 0.065 0.935 29 H 0.123 0.877 30 H 0.091 0.909 31 H 0.132 0.868 32 H 0.048 0.952 33 H 0.115 0.885 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.031 0.969 37 H 0.075 0.925 38 H 0.136 0.864 39 H 0.182 0.818 40 H 0.158 0.842 41 H 0.189 0.811 42 H 0.208 0.792 43 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -11.817 -13.352 -24.317 30.153 hybrid contribution 0.839 0.587 1.962 2.213 sum -10.979 -12.765 -22.355 27.986 Atomic orbital electron populations 1.22214 0.92335 1.03483 1.03841 1.21693 0.96601 0.93624 0.86494 1.22108 1.00091 0.96166 1.02927 1.48066 1.48608 1.25793 1.08668 1.19334 0.96119 0.93279 0.80867 1.21502 1.08914 1.23067 1.02629 0.94896 1.25794 0.99313 0.94577 0.99080 1.70046 1.37064 1.29999 1.21531 0.85830 0.80605 0.77819 0.79412 1.20808 1.20191 1.15613 1.20567 0.78820 0.81225 0.90384 1.90695 1.54301 1.59843 1.41191 1.23608 0.94291 0.90818 0.94468 0.85299 1.23229 0.97859 0.96397 0.99566 1.24405 0.91027 0.94881 0.93688 1.18861 0.97767 0.98698 0.96028 1.22020 0.99596 0.92237 0.93641 1.22453 0.96484 1.02451 0.97289 1.23582 0.92550 0.90451 0.97334 1.67864 1.34653 1.09821 1.08871 1.23340 0.89267 0.98188 0.91028 1.78440 1.14692 1.13489 0.99033 1.91391 1.59423 1.26459 1.45208 0.93459 0.87674 0.90898 0.86766 0.95153 0.88542 0.93475 0.92243 0.96887 0.92462 0.86354 0.81824 0.84241 0.81125 0.79195 0.79533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 9.17 71.98 0.66 -2.38 16 2 C 0.12 3.00 2.71 44.99 0.12 3.13 16 3 C -0.16 -4.57 8.47 71.98 0.61 -3.96 16 4 N -0.58 -22.19 2.39 -802.17 -1.91 -24.10 16 5 C 0.23 10.63 3.66 85.63 0.31 10.94 16 6 C -0.52 -30.04 8.38 25.60 0.21 -29.82 16 7 H 0.03 2.12 7.87 -2.91 -0.02 2.10 16 8 C 0.01 0.59 5.47 84.66 0.46 1.05 16 9 N -0.95 -59.84 13.96 21.45 0.30 -59.55 16 10 Si 0.94 44.21 27.47 68.60 1.88 46.09 16 11 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 12 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 13 H -0.23 -9.62 6.54 99.48 0.65 -8.97 16 14 C 0.50 20.96 7.05 87.66 0.62 21.57 16 15 O -0.58 -31.42 16.17 14.98 0.24 -31.18 16 16 C 0.03 0.92 3.21 30.44 0.10 1.02 16 17 H 0.13 3.39 7.76 -2.39 -0.02 3.37 16 18 C -0.13 -2.50 4.71 30.76 0.14 -2.36 16 19 C 0.15 3.18 7.17 45.77 0.33 3.50 16 20 C -0.11 -1.74 5.89 -20.04 -0.12 -1.86 16 21 C -0.05 -0.67 9.82 22.73 0.22 -0.45 16 22 C -0.17 -1.45 10.10 22.32 0.23 -1.23 16 23 C 0.12 1.06 11.17 84.70 0.95 2.01 16 24 N -0.50 -6.74 10.35 -194.72 -2.01 -8.75 16 25 C 0.14 1.76 10.79 85.03 0.92 2.68 16 26 N -0.31 -9.38 12.19 -42.23 -0.51 -9.89 16 27 O -0.21 -7.92 11.82 -20.31 -0.24 -8.16 16 28 H 0.05 1.13 6.66 -2.39 -0.02 1.11 16 29 H 0.10 1.21 8.14 -2.39 -0.02 1.20 16 30 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.11 2.02 4.12 -2.39 -0.01 2.01 16 32 H 0.03 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.05 1.73 6.92 -2.38 -0.02 1.72 16 35 H 0.06 2.52 5.49 -2.39 -0.01 2.51 16 36 H 0.01 0.68 6.85 -2.39 -0.02 0.66 16 37 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 38 H 0.12 2.23 7.90 -2.39 -0.02 2.21 16 39 H 0.16 1.46 6.61 -2.38 -0.02 1.44 16 40 H 0.14 2.08 7.92 -2.91 -0.02 2.05 16 41 H 0.17 0.45 8.06 -2.91 -0.02 0.42 16 42 H 0.19 0.47 8.06 -2.91 -0.02 0.44 16 43 H 0.19 1.25 7.40 -2.91 -0.02 1.23 16 Total: -1.00 -88.34 355.36 4.49 -83.86 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: 0.98 Total: 7.83 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: 5.77 Total: 3.85 kcal Atomic # 7 Polarization: -98.15 SS G_CDS: -4.14 Total: -102.30 kcal Atomic # 8 Polarization: -39.34 SS G_CDS: 0.00 Total: -39.34 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.88 Total: 46.09 kcal Total: -88.34 4.49 -83.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790556299.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.532 kcal (2) G-P(sol) polarization free energy of solvation -88.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds