Wall clock time and date at job start Tue Mar 31 2020 11:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47132 * 2 1 4 4 N 1.46503 * 109.46668 * 119.99876 * 2 1 3 5 5 C 1.46501 * 120.00210 * 122.38588 * 4 2 1 6 6 C 1.50700 * 109.47201 * 269.99822 * 5 4 2 7 7 H 1.08003 * 119.99580 * 359.97438 * 6 5 4 8 8 C 1.37871 * 119.99923 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99494 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 120.00331 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47129 * 89.99653 * 10 8 6 12 12 H 1.48504 * 109.46695 * 329.99812 * 10 8 6 13 13 H 1.48499 * 109.47327 * 210.00153 * 10 8 6 14 14 C 1.34774 * 120.00008 * 302.38077 * 4 2 1 15 15 O 1.21283 * 120.00307 * 355.58670 * 14 4 2 16 16 C 1.50709 * 120.00132 * 175.58819 * 14 4 2 17 17 H 1.08997 * 110.85730 * 310.45169 * 16 14 4 18 18 C 1.54733 * 110.97177 * 74.25266 * 16 14 4 19 19 C 1.51690 * 102.54930 * 142.33634 * 18 16 14 20 20 C 1.47650 * 125.86637 * 164.60546 * 19 18 16 21 21 C 1.40039 * 120.56248 * 180.02562 * 20 19 18 22 22 C 1.38356 * 118.28444 * 180.02562 * 21 20 19 23 23 C 1.38344 * 119.30623 * 359.97438 * 22 21 20 24 24 N 1.31906 * 121.09770 * 0.02585 * 23 22 21 25 25 C 1.31707 * 121.87899 * 359.65509 * 24 23 22 26 26 N 1.29083 * 108.26936 * 344.61246 * 19 18 16 27 27 O 1.41444 * 112.88669 * 359.70416 * 26 19 18 28 28 H 1.08999 * 109.47406 * 295.87460 * 1 2 3 29 29 H 1.09000 * 109.46950 * 55.87079 * 1 2 3 30 30 H 1.09003 * 109.47304 * 175.87201 * 1 2 3 31 31 H 1.08998 * 109.47006 * 239.99437 * 2 1 3 32 32 H 1.09000 * 109.47161 * 184.63306 * 3 2 1 33 33 H 1.08996 * 109.47043 * 304.63654 * 3 2 1 34 34 H 1.09003 * 109.47268 * 64.63265 * 3 2 1 35 35 H 1.08994 * 109.47307 * 149.99658 * 5 4 2 36 36 H 1.09000 * 109.46584 * 29.99432 * 5 4 2 37 37 H 0.97005 * 119.99463 * 180.02562 * 9 8 6 38 38 H 1.09002 * 110.79384 * 260.60118 * 18 16 14 39 39 H 1.09005 * 110.79400 * 23.88612 * 18 16 14 40 40 H 1.08004 * 120.86100 * 359.97438 * 21 20 19 41 41 H 1.08001 * 120.34132 * 180.02562 * 22 21 20 42 42 H 1.08009 * 119.44926 * 179.97438 * 23 22 21 43 43 H 1.08001 * 119.72061 * 180.34215 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.9031 -1.8506 1.0626 6 6 2.0753 -3.1073 0.9826 7 1 0.9978 -3.0479 1.0273 8 6 2.6934 -4.3328 0.8524 9 7 1.9708 -5.4294 0.7821 10 14 4.5569 -4.4355 0.7758 11 1 5.1013 -4.5853 2.1492 12 1 5.0962 -3.1954 0.1621 13 1 4.9548 -5.6074 -0.0450 14 6 1.6535 -0.2588 2.4197 15 8 0.9871 0.7481 2.5337 16 6 2.0737 -1.0271 3.6463 17 1 1.8472 -2.0876 3.5364 18 6 3.5756 -0.8098 3.9483 19 6 3.6023 -0.7538 5.4640 20 6 4.8034 -0.8799 6.3133 21 6 4.6995 -0.8119 7.7082 22 6 5.8554 -0.9352 8.4585 23 6 7.0651 -1.1205 7.8132 24 7 7.1330 -1.1807 6.4972 25 6 6.0608 -1.0750 5.7398 26 7 2.3944 -0.5772 5.8837 27 8 1.4539 -0.4870 4.8310 28 1 -0.3634 0.4485 0.9246 29 1 -0.3633 0.5766 -0.8507 30 1 -0.3634 -1.0250 -0.0740 31 1 1.8933 -0.5139 -0.8899 32 1 3.1268 1.4436 -0.0830 33 1 1.6104 1.9797 -0.8455 34 1 1.7460 1.9318 0.9286 35 1 3.5638 -1.9052 1.9277 36 1 3.4994 -1.7500 0.1557 37 1 2.4057 -6.2917 0.6908 38 1 4.1692 -1.6472 3.5815 39 1 3.9252 0.1285 3.5174 40 1 3.7420 -0.6660 8.1860 41 1 5.8137 -0.8882 9.5366 42 1 7.9689 -1.2167 8.3966 43 1 6.1560 -1.1348 4.6656 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000790556300.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:42 Heat of formation + Delta-G solvation = 29.352974 kcal Electronic energy + Delta-G solvation = -26925.442619 eV Core-core repulsion = 23166.255396 eV Total energy + Delta-G solvation = -3759.187223 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.79627 -40.08397 -38.80082 -35.62154 -34.10964 -33.38671 -32.48277 -32.10809 -30.61832 -30.15889 -27.76639 -26.74288 -24.97044 -24.33969 -23.43505 -22.39477 -21.64233 -20.22756 -18.61759 -17.50072 -17.16637 -16.80798 -16.55060 -16.48570 -15.45675 -15.33368 -15.15503 -14.69711 -14.29748 -14.17255 -13.92495 -13.42763 -13.36647 -13.27797 -13.10278 -12.79769 -12.74361 -12.48725 -12.30428 -12.14261 -11.96687 -11.70507 -11.36632 -11.09403 -10.95984 -10.80437 -10.73973 -10.48415 -10.38145 -10.34537 -9.87883 -9.81817 -9.71472 -9.08109 -8.84087 -8.74787 -7.92080 -6.32560 -4.36070 0.32773 0.95001 2.07376 2.73933 3.05900 3.11356 3.13945 3.18735 3.54919 3.59066 3.90603 4.14793 4.18856 4.43539 4.55124 4.62544 4.63781 4.81780 4.90699 4.97014 5.08938 5.19899 5.38150 5.44555 5.47272 5.55709 5.66142 5.70695 5.83153 5.85454 5.91999 6.00896 6.04852 6.20589 6.31120 6.34640 6.36743 6.47442 6.60971 6.78534 7.22490 7.29899 7.34529 7.61953 7.93273 8.26721 8.66794 8.76097 9.25210 10.79717 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010926 B = 0.004858 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2562.138126 B = 5762.430901 C = 7270.809092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.151 3.849 3 C -0.169 4.169 4 N -0.580 5.580 5 C 0.200 3.800 6 C -0.548 4.548 7 H 0.081 0.919 8 C 0.079 3.921 9 N -0.885 5.885 10 Si 0.865 3.135 11 H -0.271 1.271 12 H -0.262 1.262 13 H -0.281 1.281 14 C 0.528 3.472 15 O -0.539 6.539 16 C 0.029 3.971 17 H 0.132 0.868 18 C -0.137 4.137 19 C 0.120 3.880 20 C -0.084 4.084 21 C -0.039 4.039 22 C -0.175 4.175 23 C 0.111 3.889 24 N -0.482 5.482 25 C 0.135 3.865 26 N -0.278 5.278 27 O -0.162 6.162 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.029 0.971 36 H 0.039 0.961 37 H 0.268 0.732 38 H 0.117 0.883 39 H 0.106 0.894 40 H 0.145 0.855 41 H 0.142 0.858 42 H 0.160 0.840 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.322 8.656 8.656 15.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.048 3.952 3 C -0.227 4.227 4 N -0.312 5.312 5 C 0.079 3.921 6 C -0.586 4.586 7 H 0.099 0.901 8 C -0.126 4.126 9 N -0.522 5.522 10 Si 0.691 3.309 11 H -0.196 1.196 12 H -0.187 1.187 13 H -0.206 1.206 14 C 0.314 3.686 15 O -0.417 6.417 16 C -0.032 4.032 17 H 0.150 0.850 18 C -0.177 4.177 19 C -0.070 4.070 20 C -0.087 4.087 21 C -0.066 4.066 22 C -0.194 4.194 23 C -0.047 4.047 24 N -0.190 5.190 25 C -0.025 4.025 26 N -0.016 5.016 27 O -0.182 6.182 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.106 0.894 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.046 0.954 36 H 0.057 0.943 37 H 0.078 0.922 38 H 0.135 0.865 39 H 0.124 0.876 40 H 0.163 0.837 41 H 0.159 0.841 42 H 0.177 0.823 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 8.882 9.057 9.127 15.627 hybrid contribution 0.559 -0.594 -0.565 0.993 sum 9.441 8.463 8.561 15.299 Atomic orbital electron populations 1.22172 0.95226 1.02439 1.02755 1.20897 0.94637 0.92225 0.87427 1.22238 1.00418 0.96770 1.03257 1.47926 1.48306 1.30858 1.04106 1.20025 0.90040 0.84322 0.97676 1.21379 0.95673 0.88936 1.52636 0.90097 1.24886 0.98023 0.95529 0.94134 1.69887 1.35743 0.98224 1.48330 0.87025 0.86117 0.78744 0.79051 1.19640 1.18658 1.20623 1.19673 0.80485 0.84449 0.84016 1.90604 1.39546 1.25213 1.86372 1.23701 0.91194 1.01288 0.87037 0.85040 1.23002 0.97388 1.05990 0.91303 1.23963 0.92250 0.96502 0.94305 1.18842 0.91554 1.05371 0.92957 1.21833 0.99877 0.92573 0.92327 1.22135 0.93182 1.02357 1.01758 1.22972 0.97795 0.93299 0.90604 1.67759 1.31668 1.12872 1.06740 1.23030 0.86374 0.92433 1.00667 1.78324 0.99589 1.11213 1.12505 1.91335 1.30359 1.81829 1.14712 0.90754 0.92595 0.92095 0.89405 0.93216 0.92279 0.90582 0.95355 0.94309 0.92196 0.86510 0.87598 0.83720 0.84055 0.82264 0.81848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 9.15 37.16 0.34 -2.57 16 2 C 0.15 2.62 3.27 -67.93 -0.22 2.39 16 3 C -0.17 -2.55 9.21 37.16 0.34 -2.21 16 4 N -0.58 -11.16 2.41 -167.47 -0.40 -11.56 16 5 C 0.20 4.06 3.88 -5.19 -0.02 4.04 16 6 C -0.55 -13.59 9.43 -34.44 -0.32 -13.91 16 7 H 0.08 2.28 8.06 -52.48 -0.42 1.86 16 8 C 0.08 2.02 5.47 -17.82 -0.10 1.92 16 9 N -0.89 -24.79 13.96 55.43 0.77 -24.02 16 10 Si 0.86 18.52 27.47 -169.99 -4.67 13.85 16 11 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 12 H -0.26 -5.22 6.54 56.52 0.37 -4.85 16 13 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 14 C 0.53 10.55 6.38 -10.98 -0.07 10.48 16 15 O -0.54 -11.75 12.77 -13.21 -0.17 -11.92 16 16 C 0.03 0.55 3.28 -26.97 -0.09 0.46 16 17 H 0.13 2.64 7.44 -51.93 -0.39 2.25 16 18 C -0.14 -2.05 4.80 -26.48 -0.13 -2.18 16 19 C 0.12 1.76 7.17 -79.42 -0.57 1.19 16 20 C -0.08 -1.03 5.89 -104.88 -0.62 -1.64 16 21 C -0.04 -0.40 9.82 -38.86 -0.38 -0.79 16 22 C -0.17 -1.43 10.10 -39.50 -0.40 -1.83 16 23 C 0.11 0.97 11.17 -17.48 -0.20 0.78 16 24 N -0.48 -5.51 10.35 -12.90 -0.13 -5.64 16 25 C 0.13 1.55 10.79 -17.11 -0.18 1.36 16 26 N -0.28 -4.80 12.19 35.30 0.43 -4.37 16 27 O -0.16 -3.25 11.83 -30.15 -0.36 -3.60 16 28 H 0.07 1.42 6.04 -51.93 -0.31 1.11 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.09 1.47 7.81 -51.93 -0.41 1.06 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 1.30 6.09 -51.93 -0.32 0.99 16 35 H 0.03 0.53 4.06 -51.93 -0.21 0.32 16 36 H 0.04 0.77 7.00 -51.93 -0.36 0.41 16 37 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 38 H 0.12 1.58 6.54 -51.93 -0.34 1.24 16 39 H 0.11 1.45 7.90 -51.93 -0.41 1.04 16 40 H 0.15 1.44 7.92 -52.48 -0.42 1.02 16 41 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 42 H 0.16 0.90 8.06 -52.48 -0.42 0.48 16 43 H 0.16 1.61 7.39 -52.49 -0.39 1.23 16 LS Contribution 354.78 15.07 5.35 5.35 Total: -1.00 -31.03 354.78 -7.47 -38.50 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -5.68 Total: 5.90 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -2.62 Total: -2.49 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: 0.67 Total: -45.60 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -0.53 Total: -15.52 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -4.67 Total: 13.85 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.03 -7.47 -38.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790556300.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.858 kcal (2) G-P(sol) polarization free energy of solvation -31.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds