Wall clock time and date at job start Tue Mar 31 2020 11:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47132 * 2 1 4 4 N 1.46503 * 109.46668 * 119.99876 * 2 1 3 5 5 C 1.46501 * 120.00210 * 122.38588 * 4 2 1 6 6 C 1.50700 * 109.47201 * 269.99822 * 5 4 2 7 7 H 1.08003 * 119.99580 * 359.97438 * 6 5 4 8 8 C 1.37871 * 119.99923 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99494 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 120.00331 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47129 * 89.99653 * 10 8 6 12 12 H 1.48504 * 109.46695 * 329.99812 * 10 8 6 13 13 H 1.48499 * 109.47327 * 210.00153 * 10 8 6 14 14 C 1.34774 * 120.00008 * 302.38077 * 4 2 1 15 15 O 1.21283 * 120.00307 * 355.58670 * 14 4 2 16 16 C 1.50709 * 120.00132 * 175.58819 * 14 4 2 17 17 H 1.08997 * 110.85730 * 310.45169 * 16 14 4 18 18 C 1.54733 * 110.97177 * 74.25266 * 16 14 4 19 19 C 1.51690 * 102.54930 * 142.33634 * 18 16 14 20 20 C 1.47650 * 125.86637 * 164.60546 * 19 18 16 21 21 C 1.40039 * 120.56248 * 180.02562 * 20 19 18 22 22 C 1.38356 * 118.28444 * 180.02562 * 21 20 19 23 23 C 1.38344 * 119.30623 * 359.97438 * 22 21 20 24 24 N 1.31906 * 121.09770 * 0.02585 * 23 22 21 25 25 C 1.31707 * 121.87899 * 359.65509 * 24 23 22 26 26 N 1.29083 * 108.26936 * 344.61246 * 19 18 16 27 27 O 1.41444 * 112.88669 * 359.70416 * 26 19 18 28 28 H 1.08999 * 109.47406 * 295.87460 * 1 2 3 29 29 H 1.09000 * 109.46950 * 55.87079 * 1 2 3 30 30 H 1.09003 * 109.47304 * 175.87201 * 1 2 3 31 31 H 1.08998 * 109.47006 * 239.99437 * 2 1 3 32 32 H 1.09000 * 109.47161 * 184.63306 * 3 2 1 33 33 H 1.08996 * 109.47043 * 304.63654 * 3 2 1 34 34 H 1.09003 * 109.47268 * 64.63265 * 3 2 1 35 35 H 1.08994 * 109.47307 * 149.99658 * 5 4 2 36 36 H 1.09000 * 109.46584 * 29.99432 * 5 4 2 37 37 H 0.97005 * 119.99463 * 180.02562 * 9 8 6 38 38 H 1.09002 * 110.79384 * 260.60118 * 18 16 14 39 39 H 1.09005 * 110.79400 * 23.88612 * 18 16 14 40 40 H 1.08004 * 120.86100 * 359.97438 * 21 20 19 41 41 H 1.08001 * 120.34132 * 180.02562 * 22 21 20 42 42 H 1.08009 * 119.44926 * 179.97438 * 23 22 21 43 43 H 1.08001 * 119.72061 * 180.34215 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.9031 -1.8506 1.0626 6 6 2.0753 -3.1073 0.9826 7 1 0.9978 -3.0479 1.0273 8 6 2.6934 -4.3328 0.8524 9 7 1.9708 -5.4294 0.7821 10 14 4.5569 -4.4355 0.7758 11 1 5.1013 -4.5853 2.1492 12 1 5.0962 -3.1954 0.1621 13 1 4.9548 -5.6074 -0.0450 14 6 1.6535 -0.2588 2.4197 15 8 0.9871 0.7481 2.5337 16 6 2.0737 -1.0271 3.6463 17 1 1.8472 -2.0876 3.5364 18 6 3.5756 -0.8098 3.9483 19 6 3.6023 -0.7538 5.4640 20 6 4.8034 -0.8799 6.3133 21 6 4.6995 -0.8119 7.7082 22 6 5.8554 -0.9352 8.4585 23 6 7.0651 -1.1205 7.8132 24 7 7.1330 -1.1807 6.4972 25 6 6.0608 -1.0750 5.7398 26 7 2.3944 -0.5772 5.8837 27 8 1.4539 -0.4870 4.8310 28 1 -0.3634 0.4485 0.9246 29 1 -0.3633 0.5766 -0.8507 30 1 -0.3634 -1.0250 -0.0740 31 1 1.8933 -0.5139 -0.8899 32 1 3.1268 1.4436 -0.0830 33 1 1.6104 1.9797 -0.8455 34 1 1.7460 1.9318 0.9286 35 1 3.5638 -1.9052 1.9277 36 1 3.4994 -1.7500 0.1557 37 1 2.4057 -6.2917 0.6908 38 1 4.1692 -1.6472 3.5815 39 1 3.9252 0.1285 3.5174 40 1 3.7420 -0.6660 8.1860 41 1 5.8137 -0.8882 9.5366 42 1 7.9689 -1.2167 8.3966 43 1 6.1560 -1.1348 4.6656 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000790556300.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:41 Heat of formation + Delta-G solvation = 10.168872 kcal Electronic energy + Delta-G solvation = -26926.274504 eV Core-core repulsion = 23166.255396 eV Total energy + Delta-G solvation = -3760.019108 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.05306 -41.09189 -40.15566 -37.20414 -35.26134 -35.04518 -33.86141 -33.22054 -31.62958 -31.48782 -29.54338 -28.06851 -26.24415 -25.25805 -24.50720 -23.98993 -23.02724 -21.30580 -20.09290 -19.07450 -18.47926 -18.20825 -17.72056 -17.45885 -16.73577 -16.58188 -16.42074 -16.33300 -15.61870 -15.19258 -15.07352 -14.75813 -14.54628 -14.45497 -14.37700 -14.19680 -14.10151 -13.92720 -13.81876 -13.42327 -13.07918 -12.96774 -12.79298 -12.66253 -12.53430 -12.23668 -12.01752 -11.93205 -11.88246 -11.63160 -11.50614 -10.80104 -10.75271 -10.58793 -10.47371 -9.86991 -9.52850 -8.29756 -6.39089 -0.56394 0.20396 1.03278 1.29355 1.40439 1.43505 1.52564 1.66036 2.22094 2.34940 2.73330 2.79423 3.03702 3.19689 3.22166 3.46530 3.53031 3.79765 3.86842 3.93188 4.06030 4.11882 4.20187 4.23052 4.33852 4.38172 4.43081 4.59489 4.64821 4.74754 4.76882 4.80932 4.90350 4.93100 4.97767 5.03784 5.12448 5.25440 5.36745 5.43170 5.60201 5.75885 6.05482 6.13162 6.50608 6.68475 6.86773 7.11422 7.28086 8.86491 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010926 B = 0.004858 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2562.138126 B = 5762.430901 C = 7270.809092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.139 3.861 3 C -0.156 4.156 4 N -0.580 5.580 5 C 0.206 3.794 6 C -0.546 4.546 7 H 0.027 0.973 8 C 0.019 3.981 9 N -0.943 5.943 10 Si 0.933 3.067 11 H -0.255 1.255 12 H -0.226 1.226 13 H -0.290 1.290 14 C 0.526 3.474 15 O -0.561 6.561 16 C 0.026 3.974 17 H 0.107 0.893 18 C -0.133 4.133 19 C 0.147 3.853 20 C -0.110 4.110 21 C -0.045 4.045 22 C -0.164 4.164 23 C 0.117 3.883 24 N -0.504 5.504 25 C 0.135 3.865 26 N -0.309 5.309 27 O -0.202 6.202 28 H 0.051 0.949 29 H 0.087 0.913 30 H 0.034 0.966 31 H 0.098 0.902 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.058 0.942 37 H 0.268 0.732 38 H 0.137 0.863 39 H 0.125 0.875 40 H 0.144 0.856 41 H 0.177 0.823 42 H 0.195 0.805 43 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.511 9.871 9.264 19.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 C -0.214 4.214 4 N -0.312 5.312 5 C 0.085 3.915 6 C -0.584 4.584 7 H 0.045 0.955 8 C -0.180 4.180 9 N -0.582 5.582 10 Si 0.754 3.246 11 H -0.179 1.179 12 H -0.149 1.149 13 H -0.216 1.216 14 C 0.312 3.688 15 O -0.441 6.441 16 C -0.036 4.036 17 H 0.125 0.875 18 C -0.172 4.172 19 C -0.042 4.042 20 C -0.114 4.114 21 C -0.073 4.073 22 C -0.183 4.183 23 C -0.040 4.040 24 N -0.212 5.212 25 C -0.025 4.025 26 N -0.051 5.051 27 O -0.219 6.219 28 H 0.070 0.930 29 H 0.106 0.894 30 H 0.053 0.947 31 H 0.116 0.884 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.155 0.845 39 H 0.143 0.857 40 H 0.162 0.838 41 H 0.194 0.806 42 H 0.212 0.788 43 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 13.047 10.308 9.713 19.257 hybrid contribution -0.751 -0.986 -0.642 1.396 sum 12.296 9.322 9.071 17.899 Atomic orbital electron populations 1.22107 0.95862 1.01031 1.02951 1.21189 0.94297 0.93853 0.86956 1.22122 1.01450 0.94704 1.03146 1.47995 1.48116 1.30468 1.04588 1.19949 0.89740 0.82418 0.99405 1.21518 0.93736 0.91346 1.51809 0.95469 1.25845 1.03930 0.94708 0.93524 1.70074 1.38424 0.99069 1.50653 0.85937 0.78922 0.79785 0.79944 1.17930 1.14890 1.21593 1.19923 0.80088 0.84252 0.84576 1.90585 1.40412 1.26366 1.86763 1.23569 0.93937 0.99474 0.86600 0.87546 1.23053 0.94740 1.07681 0.91707 1.24370 0.92310 0.93079 0.94489 1.18869 0.90738 1.08276 0.93487 1.22029 1.00980 0.92307 0.91958 1.22492 0.91904 1.00523 1.03377 1.23641 0.99344 0.90935 0.90078 1.67843 1.31509 1.13843 1.08052 1.23229 0.85943 0.91800 1.01503 1.78352 1.00277 1.15239 1.11253 1.91298 1.32542 1.82442 1.15628 0.93005 0.89392 0.94706 0.88411 0.91640 0.89728 0.92826 0.92905 0.92365 0.92326 0.84507 0.85715 0.83820 0.80570 0.78815 0.80600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.71 9.15 71.98 0.66 -5.05 16 2 C 0.14 4.71 3.27 44.99 0.15 4.85 16 3 C -0.16 -4.39 9.21 71.98 0.66 -3.73 16 4 N -0.58 -22.26 2.41 -802.14 -1.93 -24.19 16 5 C 0.21 8.10 3.88 85.63 0.33 8.43 16 6 C -0.55 -27.77 9.43 25.60 0.24 -27.52 16 7 H 0.03 1.63 8.06 -2.91 -0.02 1.61 16 8 C 0.02 0.98 5.47 84.65 0.46 1.45 16 9 N -0.94 -54.86 13.96 21.45 0.30 -54.56 16 10 Si 0.93 36.78 27.47 68.60 1.88 38.66 16 11 H -0.25 -9.38 7.11 99.48 0.71 -8.68 16 12 H -0.23 -7.61 6.54 99.48 0.65 -6.95 16 13 H -0.29 -11.86 7.11 99.48 0.71 -11.16 16 14 C 0.53 21.49 6.38 87.66 0.56 22.05 16 15 O -0.56 -25.29 12.77 14.90 0.19 -25.10 16 16 C 0.03 1.00 3.28 30.44 0.10 1.10 16 17 H 0.11 4.55 7.44 -2.39 -0.02 4.53 16 18 C -0.13 -3.80 4.80 30.76 0.15 -3.66 16 19 C 0.15 4.23 7.17 45.77 0.33 4.56 16 20 C -0.11 -2.49 5.89 -20.03 -0.12 -2.61 16 21 C -0.05 -0.86 9.82 22.73 0.22 -0.63 16 22 C -0.16 -2.07 10.10 22.32 0.23 -1.84 16 23 C 0.12 1.58 11.17 84.71 0.95 2.52 16 24 N -0.50 -9.79 10.35 -194.72 -2.01 -11.80 16 25 C 0.13 2.71 10.79 85.03 0.92 3.63 16 26 N -0.31 -10.93 12.19 -42.22 -0.51 -11.44 16 27 O -0.20 -8.54 11.83 -20.50 -0.24 -8.78 16 28 H 0.05 2.06 6.04 -2.39 -0.01 2.05 16 29 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.03 1.36 8.14 -2.39 -0.02 1.35 16 31 H 0.10 3.11 7.81 -2.39 -0.02 3.09 16 32 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.05 1.78 6.09 -2.39 -0.01 1.76 16 35 H 0.05 1.84 4.06 -2.39 -0.01 1.83 16 36 H 0.06 2.12 7.00 -2.39 -0.02 2.10 16 37 H 0.27 14.59 8.31 -92.70 -0.77 13.82 16 38 H 0.14 3.34 6.54 -2.39 -0.02 3.32 16 39 H 0.12 3.15 7.90 -2.38 -0.02 3.13 16 40 H 0.14 2.70 7.92 -2.91 -0.02 2.67 16 41 H 0.18 0.97 8.06 -2.91 -0.02 0.94 16 42 H 0.20 1.18 8.06 -2.91 -0.02 1.16 16 43 H 0.18 2.90 7.39 -2.91 -0.02 2.88 16 Total: -1.00 -72.70 354.78 4.48 -68.22 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: 0.98 Total: 25.43 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: 5.83 Total: 3.56 kcal Atomic # 7 Polarization: -97.83 SS G_CDS: -4.16 Total: -101.99 kcal Atomic # 8 Polarization: -33.82 SS G_CDS: -0.05 Total: -33.88 kcal Atomic # 14 Polarization: 36.78 SS G_CDS: 1.88 Total: 38.66 kcal Total: -72.70 4.48 -68.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790556300.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.389 kcal (2) G-P(sol) polarization free energy of solvation -72.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds