Wall clock time and date at job start Tue Mar 31 2020 11:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50693 * 120.00015 * 2 1 4 4 N 1.46903 * 109.47414 * 124.62099 * 3 2 1 5 5 C 1.46897 * 111.00185 * 199.66809 * 4 3 2 6 6 C 1.50706 * 109.47318 * 66.04414 * 5 4 3 7 7 H 1.08003 * 119.99661 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00041 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00197 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99945 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46721 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.46844 * 119.99820 * 10 8 6 13 13 H 1.48494 * 109.47040 * 240.00178 * 10 8 6 14 14 C 1.46899 * 111.00039 * 75.71025 * 4 3 2 15 15 C 1.50692 * 109.47183 * 199.97549 * 14 4 3 16 16 O 1.21283 * 120.00198 * 355.78830 * 15 14 4 17 17 N 1.34778 * 120.00379 * 175.79138 * 15 14 4 18 18 N 1.40096 * 120.00456 * 179.97438 * 17 15 14 19 19 C 1.34779 * 120.00033 * 179.97438 * 18 17 15 20 20 O 1.21548 * 119.99939 * 0.02562 * 19 18 17 21 21 C 1.47847 * 120.00054 * 180.02562 * 19 18 17 22 22 C 1.39571 * 120.14400 * 179.97438 * 21 19 18 23 23 C 1.37963 * 119.85122 * 179.97438 * 22 21 19 24 24 C 1.38357 * 120.14471 * 0.02562 * 23 22 21 25 25 C 1.38366 * 120.29438 * 359.97438 * 24 23 22 26 26 C 1.37957 * 120.14127 * 0.02562 * 25 24 23 27 27 H 1.08002 * 120.00334 * 0.02562 * 1 2 3 28 28 H 1.08006 * 120.00406 * 179.97438 * 1 2 3 29 29 H 1.08006 * 119.99838 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.47215 * 4.62237 * 3 2 1 31 31 H 1.09007 * 109.47172 * 244.61942 * 3 2 1 32 32 H 1.09000 * 109.47346 * 186.04547 * 5 4 3 33 33 H 1.09001 * 109.47083 * 306.04787 * 5 4 3 34 34 H 0.96999 * 119.99938 * 179.97438 * 9 8 6 35 35 H 1.09004 * 109.46532 * 79.97897 * 14 4 3 36 36 H 1.08993 * 109.47188 * 319.98184 * 14 4 3 37 37 H 0.97009 * 119.99655 * 0.02562 * 17 15 14 38 38 H 0.96996 * 120.00184 * 0.02562 * 18 17 15 39 39 H 1.08003 * 120.07607 * 359.70889 * 22 21 19 40 40 H 1.07999 * 119.92174 * 180.02562 * 23 22 21 41 41 H 1.07994 * 119.85348 * 179.97438 * 24 23 22 42 42 H 1.07993 * 119.92838 * 180.02562 * 25 24 23 43 43 H 1.08001 * 120.06990 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3050 0.0000 4 7 2.9898 1.3357 1.1397 5 6 3.3897 2.7133 1.4562 6 6 2.1914 3.4842 1.9472 7 1 1.2289 2.9992 2.0168 8 6 2.3237 4.8087 2.3066 9 7 3.4956 5.3993 2.2213 10 14 0.8382 5.7643 2.9145 11 1 -0.3534 4.8781 2.9167 12 1 1.0946 6.2533 4.2930 13 1 0.5924 6.9211 2.0165 14 6 4.1648 0.4915 0.8860 15 6 4.8286 0.1480 2.1945 16 8 4.4141 0.6269 3.2289 17 7 5.8828 -0.6914 2.2156 18 7 6.5002 -1.0104 3.4320 19 6 7.5542 -1.8502 3.4530 20 8 7.9693 -2.3305 2.4165 21 6 8.2054 -2.1872 4.7368 22 6 9.2967 -3.0570 4.7621 23 6 9.9001 -3.3669 5.9634 24 6 9.4255 -2.8180 7.1414 25 6 8.3440 -1.9551 7.1233 26 6 7.7315 -1.6370 5.9288 27 1 -0.5401 0.9353 -0.0004 28 1 -0.5401 -0.9353 -0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.3580 2.1319 0.0828 31 1 2.6266 1.3995 -0.9285 32 1 4.1559 2.7003 2.2313 33 1 3.7870 3.1911 0.5606 34 1 3.5886 6.3312 2.4738 35 1 4.8690 1.0301 0.2518 36 1 3.8525 -0.4249 0.3854 37 1 6.2146 -1.0742 1.3882 38 1 6.1688 -0.6274 4.2592 39 1 9.6652 -3.4898 3.8438 40 1 10.7449 -4.0395 5.9843 41 1 9.9011 -3.0642 8.0792 42 1 7.9786 -1.5297 8.0463 43 1 6.8872 -0.9636 5.9161 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794745779.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:26 Heat of formation + Delta-G solvation = 26.260080 kcal Electronic energy + Delta-G solvation = -25334.430744 eV Core-core repulsion = 21575.109403 eV Total energy + Delta-G solvation = -3759.321341 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.62093 -39.41302 -38.33774 -36.75035 -35.16251 -33.14442 -32.54978 -32.17624 -31.29076 -30.52848 -27.96184 -26.60236 -24.42288 -23.77985 -22.84152 -21.49428 -21.23057 -20.29993 -19.17945 -18.29127 -17.75699 -16.82267 -16.43931 -16.01669 -15.58125 -15.52622 -14.99417 -14.86377 -14.67518 -14.45272 -14.18797 -14.02879 -13.76621 -13.60530 -13.48187 -12.94604 -12.33007 -12.18388 -12.03480 -11.90020 -11.57629 -11.45423 -11.19426 -11.06785 -10.76844 -10.63120 -10.41101 -10.26977 -9.96751 -9.56963 -9.38733 -9.34188 -9.17889 -8.93095 -8.40294 -8.27477 -7.34313 -5.98837 -3.98523 0.49712 1.01061 1.80931 2.50085 2.70605 2.98163 3.33716 3.41080 3.46201 3.55554 3.91231 4.40262 4.46844 4.47149 4.58348 4.77052 4.98433 5.00508 5.09743 5.15757 5.34838 5.38583 5.42145 5.50353 5.62240 5.65087 5.66476 5.93686 6.01049 6.03280 6.08196 6.23950 6.48535 6.49726 6.68520 6.73566 7.00026 7.20399 7.25566 7.26392 7.58463 7.81066 7.88427 8.08848 8.15089 8.48963 8.58909 9.07730 9.64342 11.12534 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013822 B = 0.002815 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.242159 B = 9943.286475 C =11263.847387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.136 4.136 3 C 0.084 3.916 4 N -0.515 5.515 5 C 0.192 3.808 6 C -0.500 4.500 7 H 0.064 0.936 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.896 3.104 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.286 1.286 14 C 0.048 3.952 15 C 0.513 3.487 16 O -0.496 6.496 17 N -0.536 5.536 18 N -0.513 5.513 19 C 0.557 3.443 20 O -0.543 6.543 21 C -0.126 4.126 22 C -0.057 4.057 23 C -0.129 4.129 24 C -0.093 4.093 25 C -0.125 4.125 26 C -0.085 4.085 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.033 0.967 32 H 0.043 0.957 33 H -0.011 1.011 34 H 0.260 0.740 35 H 0.065 0.935 36 H 0.094 0.906 37 H 0.427 0.573 38 H 0.431 0.569 39 H 0.138 0.862 40 H 0.131 0.869 41 H 0.128 0.872 42 H 0.132 0.868 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.948 -17.472 3.948 20.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.154 4.154 3 C -0.043 4.043 4 N -0.240 5.240 5 C 0.068 3.932 6 C -0.538 4.538 7 H 0.082 0.918 8 C -0.146 4.146 9 N -0.539 5.539 10 Si 0.725 3.275 11 H -0.196 1.196 12 H -0.211 1.211 13 H -0.212 1.212 14 C -0.086 4.086 15 C 0.299 3.701 16 O -0.365 6.365 17 N -0.288 5.288 18 N -0.259 5.259 19 C 0.345 3.655 20 O -0.421 6.421 21 C -0.130 4.130 22 C -0.076 4.076 23 C -0.147 4.147 24 C -0.112 4.112 25 C -0.143 4.143 26 C -0.104 4.104 27 H 0.115 0.885 28 H 0.108 0.892 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.007 0.993 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.112 0.888 37 H 0.269 0.731 38 H 0.274 0.726 39 H 0.156 0.844 40 H 0.149 0.851 41 H 0.146 0.854 42 H 0.150 0.850 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 9.718 -17.403 4.412 20.415 hybrid contribution -0.224 0.925 -0.202 0.973 sum 9.494 -16.478 4.210 19.478 Atomic orbital electron populations 1.23715 0.95969 1.01314 1.02442 1.22964 0.95997 0.98289 0.98185 1.21236 0.95979 0.95954 0.91158 1.61822 1.11475 1.14316 1.36341 1.19873 0.97521 0.80398 0.95435 1.21127 0.95299 0.94638 1.42775 0.91793 1.24963 0.95995 0.97723 0.95948 1.69967 1.22863 1.12021 1.49049 0.86461 0.82945 0.79711 0.78427 1.19646 1.21053 1.21203 1.21783 0.94938 1.00091 0.91748 1.21304 0.78118 0.77369 0.93325 1.90782 1.61752 1.50019 1.33991 1.45224 1.32340 1.50569 1.00714 1.44692 1.30764 1.47607 1.02883 1.18325 0.79057 0.78535 0.89608 1.90776 1.64090 1.53558 1.33675 1.19668 0.99189 1.02249 0.91929 1.21267 0.92961 0.94388 0.98984 1.21176 1.00601 1.00799 0.92128 1.21427 0.95686 0.95532 0.98516 1.21160 0.96472 0.98592 0.98050 1.21440 0.99020 0.97891 0.92004 0.88483 0.89243 0.88446 0.88392 0.94915 0.93899 0.99280 0.93078 0.91758 0.88770 0.73114 0.72566 0.84446 0.85144 0.85426 0.85038 0.85243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.87 14.32 29.02 0.42 -2.45 16 2 C -0.14 -2.11 9.32 -36.03 -0.34 -2.45 16 3 C 0.08 1.55 5.24 -4.98 -0.03 1.52 16 4 N -0.51 -10.86 4.00 -238.97 -0.96 -11.81 16 5 C 0.19 5.01 4.33 -4.97 -0.02 4.98 16 6 C -0.50 -14.17 8.23 -34.44 -0.28 -14.45 16 7 H 0.06 1.81 7.31 -52.48 -0.38 1.43 16 8 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 10 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 11 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 14 C 0.05 0.79 5.30 -4.98 -0.03 0.77 16 15 C 0.51 9.05 7.68 -10.99 -0.08 8.96 16 16 O -0.50 -10.96 14.90 5.55 0.08 -10.87 16 17 N -0.54 -7.73 6.26 31.22 0.20 -7.53 16 18 N -0.51 -7.01 6.21 30.53 0.19 -6.82 16 19 C 0.56 7.41 7.89 -12.33 -0.10 7.31 16 20 O -0.54 -8.44 16.19 5.32 0.09 -8.35 16 21 C -0.13 -1.37 5.87 -104.97 -0.62 -1.99 16 22 C -0.06 -0.54 9.60 -39.19 -0.38 -0.92 16 23 C -0.13 -0.95 10.03 -39.64 -0.40 -1.35 16 24 C -0.09 -0.64 10.04 -39.49 -0.40 -1.04 16 25 C -0.12 -0.96 10.03 -39.64 -0.40 -1.36 16 26 C -0.08 -0.79 9.54 -39.19 -0.37 -1.16 16 27 H 0.10 1.45 7.84 -52.49 -0.41 1.04 16 28 H 0.09 1.11 8.06 -52.48 -0.42 0.69 16 29 H 0.10 1.34 7.28 -52.48 -0.38 0.96 16 30 H 0.10 2.02 6.23 -51.93 -0.32 1.70 16 31 H 0.03 0.55 8.00 -51.93 -0.42 0.14 16 32 H 0.04 1.24 6.60 -51.93 -0.34 0.90 16 33 H -0.01 -0.29 8.12 -51.93 -0.42 -0.71 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.06 1.00 8.00 -51.93 -0.42 0.59 16 36 H 0.09 1.23 6.81 -51.93 -0.35 0.88 16 37 H 0.43 5.31 8.00 -182.59 -1.46 3.85 16 38 H 0.43 5.63 6.04 -182.60 -1.10 4.53 16 39 H 0.14 1.28 7.65 -52.48 -0.40 0.88 16 40 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 41 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 42 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 43 H 0.13 1.09 6.41 -52.49 -0.34 0.75 16 LS Contribution 369.40 15.07 5.57 5.57 Total: -1.00 -35.35 369.40 -9.81 -45.16 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -7.58 Total: 6.15 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -3.12 Total: -2.15 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: 0.16 Total: -52.47 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: 0.17 Total: -19.23 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.35 -9.81 -45.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794745779.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.424 kcal (2) G-P(sol) polarization free energy of solvation -35.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds