Wall clock time and date at job start Tue Mar 31 2020 11:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50693 * 120.00015 * 2 1 4 4 N 1.46903 * 109.47414 * 124.62099 * 3 2 1 5 5 C 1.46897 * 111.00185 * 199.66809 * 4 3 2 6 6 C 1.50706 * 109.47318 * 66.04414 * 5 4 3 7 7 H 1.08003 * 119.99661 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00041 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00197 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99945 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46721 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.46844 * 119.99820 * 10 8 6 13 13 H 1.48494 * 109.47040 * 240.00178 * 10 8 6 14 14 C 1.46899 * 111.00039 * 75.71025 * 4 3 2 15 15 C 1.50692 * 109.47183 * 199.97549 * 14 4 3 16 16 O 1.21283 * 120.00198 * 355.78830 * 15 14 4 17 17 N 1.34778 * 120.00379 * 175.79138 * 15 14 4 18 18 N 1.40096 * 120.00456 * 179.97438 * 17 15 14 19 19 C 1.34779 * 120.00033 * 179.97438 * 18 17 15 20 20 O 1.21548 * 119.99939 * 0.02562 * 19 18 17 21 21 C 1.47847 * 120.00054 * 180.02562 * 19 18 17 22 22 C 1.39571 * 120.14400 * 179.97438 * 21 19 18 23 23 C 1.37963 * 119.85122 * 179.97438 * 22 21 19 24 24 C 1.38357 * 120.14471 * 0.02562 * 23 22 21 25 25 C 1.38366 * 120.29438 * 359.97438 * 24 23 22 26 26 C 1.37957 * 120.14127 * 0.02562 * 25 24 23 27 27 H 1.08002 * 120.00334 * 0.02562 * 1 2 3 28 28 H 1.08006 * 120.00406 * 179.97438 * 1 2 3 29 29 H 1.08006 * 119.99838 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.47215 * 4.62237 * 3 2 1 31 31 H 1.09007 * 109.47172 * 244.61942 * 3 2 1 32 32 H 1.09000 * 109.47346 * 186.04547 * 5 4 3 33 33 H 1.09001 * 109.47083 * 306.04787 * 5 4 3 34 34 H 0.96999 * 119.99938 * 179.97438 * 9 8 6 35 35 H 1.09004 * 109.46532 * 79.97897 * 14 4 3 36 36 H 1.08993 * 109.47188 * 319.98184 * 14 4 3 37 37 H 0.97009 * 119.99655 * 0.02562 * 17 15 14 38 38 H 0.96996 * 120.00184 * 0.02562 * 18 17 15 39 39 H 1.08003 * 120.07607 * 359.70889 * 22 21 19 40 40 H 1.07999 * 119.92174 * 180.02562 * 23 22 21 41 41 H 1.07994 * 119.85348 * 179.97438 * 24 23 22 42 42 H 1.07993 * 119.92838 * 180.02562 * 25 24 23 43 43 H 1.08001 * 120.06990 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3050 0.0000 4 7 2.9898 1.3357 1.1397 5 6 3.3897 2.7133 1.4562 6 6 2.1914 3.4842 1.9472 7 1 1.2289 2.9992 2.0168 8 6 2.3237 4.8087 2.3066 9 7 3.4956 5.3993 2.2213 10 14 0.8382 5.7643 2.9145 11 1 -0.3534 4.8781 2.9167 12 1 1.0946 6.2533 4.2930 13 1 0.5924 6.9211 2.0165 14 6 4.1648 0.4915 0.8860 15 6 4.8286 0.1480 2.1945 16 8 4.4141 0.6269 3.2289 17 7 5.8828 -0.6914 2.2156 18 7 6.5002 -1.0104 3.4320 19 6 7.5542 -1.8502 3.4530 20 8 7.9693 -2.3305 2.4165 21 6 8.2054 -2.1872 4.7368 22 6 9.2967 -3.0570 4.7621 23 6 9.9001 -3.3669 5.9634 24 6 9.4255 -2.8180 7.1414 25 6 8.3440 -1.9551 7.1233 26 6 7.7315 -1.6370 5.9288 27 1 -0.5401 0.9353 -0.0004 28 1 -0.5401 -0.9353 -0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.3580 2.1319 0.0828 31 1 2.6266 1.3995 -0.9285 32 1 4.1559 2.7003 2.2313 33 1 3.7870 3.1911 0.5606 34 1 3.5886 6.3312 2.4738 35 1 4.8690 1.0301 0.2518 36 1 3.8525 -0.4249 0.3854 37 1 6.2146 -1.0742 1.3882 38 1 6.1688 -0.6274 4.2592 39 1 9.6652 -3.4898 3.8438 40 1 10.7449 -4.0395 5.9843 41 1 9.9011 -3.0642 8.0792 42 1 7.9786 -1.5297 8.0463 43 1 6.8872 -0.9636 5.9161 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794745779.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:24 Heat of formation + Delta-G solvation = 1.031614 kcal Electronic energy + Delta-G solvation = -25335.524733 eV Core-core repulsion = 21575.109403 eV Total energy + Delta-G solvation = -3760.415329 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.70286 -40.60729 -39.27796 -38.27190 -36.44327 -34.95202 -33.99763 -33.40940 -31.94649 -31.54246 -29.70218 -28.13774 -25.91170 -24.96546 -23.56365 -22.99061 -22.44347 -21.54846 -20.43424 -19.35092 -18.93487 -18.52889 -17.91141 -17.02874 -16.87771 -16.60127 -16.38968 -16.04942 -15.92345 -15.79766 -15.50924 -15.17461 -15.00068 -14.82742 -14.37760 -14.14205 -13.94514 -13.67174 -13.40206 -13.17116 -12.83208 -12.67131 -12.60114 -12.51918 -12.40144 -12.06622 -12.03597 -11.76961 -11.46823 -11.27002 -10.97941 -10.58965 -10.21771 -10.08808 -9.99074 -9.48394 -9.01076 -8.18830 -6.26471 -0.24904 0.37854 0.66193 1.38806 1.40234 1.40645 1.50137 1.53799 1.77947 2.40873 2.81374 2.83870 3.14481 3.35495 3.47414 3.83619 3.88546 3.97219 4.08029 4.23620 4.25331 4.33830 4.42642 4.43060 4.47708 4.63281 4.79260 4.93180 5.02969 5.05744 5.21562 5.24349 5.30631 5.38640 5.46728 5.50111 5.62613 5.68532 5.79259 5.91107 6.03810 6.07166 6.32930 6.37176 6.59430 6.75118 6.88033 7.27736 7.41411 8.92849 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013822 B = 0.002815 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.242159 B = 9943.286475 C =11263.847387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.147 4.147 3 C 0.085 3.915 4 N -0.529 5.529 5 C 0.212 3.788 6 C -0.514 4.514 7 H 0.059 0.941 8 C 0.000 4.000 9 N -0.935 5.935 10 Si 0.966 3.034 11 H -0.264 1.264 12 H -0.282 1.282 13 H -0.275 1.275 14 C 0.046 3.954 15 C 0.515 3.485 16 O -0.548 6.548 17 N -0.522 5.522 18 N -0.516 5.516 19 C 0.560 3.440 20 O -0.570 6.570 21 C -0.150 4.150 22 C -0.069 4.069 23 C -0.126 4.126 24 C -0.084 4.084 25 C -0.129 4.129 26 C -0.094 4.094 27 H 0.086 0.914 28 H 0.118 0.882 29 H 0.123 0.877 30 H 0.067 0.933 31 H 0.048 0.952 32 H 0.007 0.993 33 H -0.033 1.033 34 H 0.263 0.737 35 H 0.077 0.923 36 H 0.138 0.862 37 H 0.438 0.562 38 H 0.433 0.567 39 H 0.133 0.867 40 H 0.159 0.841 41 H 0.161 0.839 42 H 0.153 0.847 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.884 -19.242 4.783 22.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.165 4.165 3 C -0.042 4.042 4 N -0.254 5.254 5 C 0.086 3.914 6 C -0.552 4.552 7 H 0.077 0.923 8 C -0.198 4.198 9 N -0.576 5.576 10 Si 0.790 3.210 11 H -0.188 1.188 12 H -0.208 1.208 13 H -0.201 1.201 14 C -0.087 4.087 15 C 0.302 3.698 16 O -0.422 6.422 17 N -0.274 5.274 18 N -0.264 5.264 19 C 0.349 3.651 20 O -0.449 6.449 21 C -0.154 4.154 22 C -0.088 4.088 23 C -0.144 4.144 24 C -0.102 4.102 25 C -0.146 4.146 26 C -0.113 4.113 27 H 0.105 0.895 28 H 0.136 0.864 29 H 0.141 0.859 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.025 0.975 33 H -0.015 1.015 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.156 0.844 37 H 0.282 0.718 38 H 0.276 0.724 39 H 0.151 0.849 40 H 0.176 0.824 41 H 0.178 0.822 42 H 0.171 0.829 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 9.672 -19.219 5.214 22.138 hybrid contribution -0.117 1.377 -0.432 1.448 sum 9.554 -17.842 4.782 20.796 Atomic orbital electron populations 1.23929 0.95802 1.02243 1.00568 1.22916 0.96299 0.97528 0.99792 1.21204 0.95282 0.96899 0.90787 1.61630 1.13578 1.11753 1.38402 1.19403 0.95675 0.83190 0.93169 1.21433 0.95787 0.95289 1.42688 0.92276 1.25872 0.99002 0.98844 0.96069 1.70091 1.25019 1.12460 1.50049 0.85388 0.79365 0.78354 0.77848 1.18806 1.20767 1.20072 1.21937 0.93861 1.01168 0.91694 1.21458 0.78341 0.77044 0.92994 1.90760 1.63593 1.52210 1.35634 1.44993 1.31355 1.49354 1.01699 1.44878 1.31013 1.47929 1.02536 1.18814 0.78372 0.77561 0.90345 1.90746 1.64801 1.54560 1.34835 1.19610 1.00446 1.04254 0.91100 1.21396 0.92936 0.94461 1.00002 1.21515 1.00896 1.00681 0.91322 1.21859 0.94756 0.93962 0.99652 1.21492 0.96532 0.98539 0.98087 1.21556 0.99393 0.98078 0.92284 0.89524 0.86364 0.85878 0.91427 0.93422 0.97479 1.01539 0.92866 0.90492 0.84405 0.71818 0.72350 0.84912 0.82379 0.82175 0.82916 0.85235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.09 14.32 67.78 0.97 -4.12 16 2 C -0.15 -4.29 9.32 25.65 0.24 -4.05 16 3 C 0.09 3.12 5.24 85.55 0.45 3.57 16 4 N -0.53 -22.61 4.00 -909.96 -3.64 -26.26 16 5 C 0.21 11.49 4.33 85.56 0.37 11.86 16 6 C -0.51 -30.03 8.23 25.60 0.21 -29.82 16 7 H 0.06 3.43 7.31 -2.91 -0.02 3.41 16 8 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 9 N -0.94 -57.84 13.29 21.45 0.28 -57.56 16 10 Si 0.97 45.77 29.54 68.60 2.03 47.79 16 11 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 12 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 13 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 14 C 0.05 1.51 5.30 85.55 0.45 1.96 16 15 C 0.51 18.44 7.68 87.65 0.67 19.12 16 16 O -0.55 -25.17 14.90 -3.04 -0.05 -25.22 16 17 N -0.52 -15.17 6.26 -173.54 -1.09 -16.26 16 18 N -0.52 -14.51 6.21 -175.60 -1.09 -15.60 16 19 C 0.56 15.21 7.89 86.79 0.68 15.90 16 20 O -0.57 -17.99 16.19 -3.87 -0.06 -18.05 16 21 C -0.15 -3.27 5.87 -20.09 -0.12 -3.39 16 22 C -0.07 -1.27 9.60 22.53 0.22 -1.05 16 23 C -0.13 -1.56 10.03 22.23 0.22 -1.34 16 24 C -0.08 -0.90 10.04 22.33 0.22 -0.67 16 25 C -0.13 -1.72 10.03 22.23 0.22 -1.50 16 26 C -0.09 -1.72 9.54 22.53 0.21 -1.51 16 27 H 0.09 2.51 7.84 -2.91 -0.02 2.49 16 28 H 0.12 2.54 8.06 -2.91 -0.02 2.51 16 29 H 0.12 2.96 7.28 -2.91 -0.02 2.94 16 30 H 0.07 2.86 6.23 -2.39 -0.01 2.85 16 31 H 0.05 1.57 8.00 -2.38 -0.02 1.55 16 32 H 0.01 0.43 6.60 -2.39 -0.02 0.42 16 33 H -0.03 -1.89 8.12 -2.39 -0.02 -1.91 16 34 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 35 H 0.08 2.36 8.00 -2.38 -0.02 2.34 16 36 H 0.14 3.26 6.81 -2.39 -0.02 3.24 16 37 H 0.44 10.71 8.00 -213.31 -1.71 9.01 16 38 H 0.43 11.85 6.04 -213.33 -1.29 10.56 16 39 H 0.13 2.48 7.65 -2.91 -0.02 2.46 16 40 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16 41 H 0.16 0.68 8.06 -2.91 -0.02 0.66 16 42 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 43 H 0.13 2.25 6.41 -2.91 -0.02 2.24 16 Total: -1.00 -79.70 369.40 -0.07 -79.77 By element: Atomic # 1 Polarization: 27.94 SS G_CDS: -1.95 Total: 25.99 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: 5.50 Total: 5.39 kcal Atomic # 7 Polarization: -110.14 SS G_CDS: -5.53 Total: -115.67 kcal Atomic # 8 Polarization: -43.16 SS G_CDS: -0.11 Total: -43.27 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.79 kcal Total: -79.70 -0.07 -79.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794745779.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.801 kcal (2) G-P(sol) polarization free energy of solvation -79.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds