Wall clock time and date at job start Tue Mar 31 2020 11:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47258 * 2 1 4 4 H 1.09008 * 109.46664 * 54.99779 * 3 2 1 5 5 C 1.50696 * 109.47383 * 175.00194 * 3 2 1 6 6 H 1.07991 * 120.00241 * 119.99889 * 5 3 2 7 7 C 1.37885 * 119.99643 * 299.72677 * 5 3 2 8 8 N 1.31511 * 119.99301 * 180.27609 * 7 5 3 9 9 Si 1.86796 * 120.00206 * 0.27145 * 7 5 3 10 10 H 1.48501 * 109.46929 * 90.00242 * 9 7 5 11 11 H 1.48500 * 109.47165 * 209.99980 * 9 7 5 12 12 H 1.48502 * 109.47244 * 330.00510 * 9 7 5 13 13 O 1.45198 * 109.47197 * 295.00423 * 3 2 1 14 14 C 1.34733 * 117.00209 * 89.99135 * 13 3 2 15 15 O 1.21493 * 119.99871 * 0.02562 * 14 13 3 16 16 C 1.47555 * 119.99989 * 179.97438 * 14 13 3 17 17 C 1.39601 * 120.41778 * 353.75037 * 16 14 13 18 18 C 1.39597 * 117.95198 * 179.97438 * 17 16 14 19 19 C 1.45977 * 134.12882 * 180.02562 * 18 17 16 20 20 N 1.30201 * 107.58498 * 179.97438 * 19 18 17 21 21 N 1.39793 * 110.14316 * 359.97438 * 20 19 18 22 22 C 1.46501 * 125.33699 * 179.97438 * 21 20 19 23 23 C 1.52995 * 109.47080 * 270.02325 * 22 21 20 24 24 C 1.36623 * 109.32818 * 0.02562 * 21 20 19 25 25 N 1.32909 * 133.27054 * 180.02562 * 24 21 20 26 26 C 1.31202 * 121.85354 * 179.67495 * 25 24 21 27 27 C 1.50695 * 119.31461 * 180.30759 * 26 25 24 28 28 H 1.09002 * 109.47281 * 299.99612 * 1 2 3 29 29 H 1.08999 * 109.47620 * 60.00152 * 1 2 3 30 30 H 1.09000 * 109.46700 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47281 * 240.00388 * 2 1 3 32 32 H 1.09003 * 109.47153 * 120.00414 * 2 1 3 33 33 H 0.97008 * 119.99496 * 179.97438 * 8 7 5 34 34 H 1.08003 * 121.02693 * 0.02562 * 17 16 14 35 35 H 1.08000 * 126.21090 * 359.92617 * 19 18 17 36 36 H 1.09006 * 109.47021 * 30.02154 * 22 21 20 37 37 H 1.09000 * 109.47120 * 150.01907 * 22 21 20 38 38 H 1.08997 * 109.47487 * 180.02562 * 23 22 21 39 39 H 1.09006 * 109.47054 * 299.99808 * 23 22 21 40 40 H 1.09000 * 109.47485 * 59.99805 * 23 22 21 41 41 H 1.09003 * 109.47257 * 263.62661 * 27 26 25 42 42 H 1.08998 * 109.47643 * 23.63114 * 27 26 25 43 43 H 1.08997 * 109.46985 * 143.62920 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8889 -0.6523 7 6 4.1430 0.8834 1.2307 8 7 5.4535 0.8899 1.3412 9 14 3.0962 0.1145 2.5731 10 1 2.8804 -1.3232 2.2701 11 1 3.7907 0.2463 3.8790 12 1 1.7851 0.8090 2.6373 13 8 1.6559 2.0917 -1.2406 14 6 0.4682 2.7278 -1.2559 15 8 -0.2272 2.7400 -0.2598 16 6 0.0126 3.4104 -2.4822 17 6 0.8577 3.5150 -3.5884 18 6 0.3739 4.1709 -4.7218 19 6 0.9322 4.4757 -6.0357 20 7 0.0226 5.1183 -6.7101 21 7 -1.1310 5.2732 -5.9360 22 6 -2.3576 5.9473 -6.3688 23 6 -2.2759 7.4330 -6.0126 24 6 -0.9349 4.6985 -4.7122 25 7 -1.6994 4.5713 -3.6324 26 6 -1.2768 3.9561 -2.5534 27 6 -2.1944 3.8388 -1.3638 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 5.8764 0.4956 2.1201 34 1 1.8549 3.1006 -3.5684 35 1 1.9207 4.2160 -6.3847 36 1 -2.4711 5.8380 -7.4474 37 1 -3.2150 5.4997 -5.8660 38 1 -3.1887 7.9345 -6.3341 39 1 -2.1624 7.5423 -4.9340 40 1 -1.4186 7.8806 -6.5153 41 1 -1.9759 4.6385 -0.6561 42 1 -3.2300 3.9190 -1.6943 43 1 -2.0410 2.8740 -0.8804 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799627633.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:56 Heat of formation + Delta-G solvation = 17.372567 kcal Electronic energy + Delta-G solvation = -26596.379367 eV Core-core repulsion = 22836.672634 eV Total energy + Delta-G solvation = -3759.706732 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.77539 -39.98846 -38.27392 -36.03626 -34.89938 -33.72287 -32.54061 -31.90512 -31.78381 -29.59762 -28.03775 -27.51345 -24.81668 -23.71562 -22.95414 -22.39278 -21.40321 -20.73615 -19.93563 -18.17104 -17.60142 -16.78700 -16.53336 -16.01731 -15.81019 -15.50256 -15.32147 -14.65246 -14.47038 -14.13199 -13.84015 -13.54313 -13.40992 -13.07670 -12.91930 -12.82117 -12.52683 -12.39302 -12.16235 -11.95627 -11.85280 -11.77547 -11.63126 -11.47651 -11.26417 -11.16739 -10.78100 -10.62034 -10.06055 -9.93801 -9.68450 -9.64424 -9.40558 -9.11114 -9.01971 -8.68494 -8.48103 -6.25707 -4.28266 0.62732 0.73310 1.88889 2.25079 2.90346 3.16697 3.29375 3.30801 3.35551 3.73759 3.90567 4.07370 4.23925 4.39058 4.59516 4.66811 4.72254 4.89990 4.94577 5.04041 5.13094 5.22853 5.41895 5.46226 5.58269 5.72439 5.77105 5.79417 5.79855 5.85861 5.90496 5.96931 6.07027 6.19344 6.32656 6.44078 6.54738 6.61570 6.69055 6.70632 7.03819 7.22651 7.32698 7.48355 7.74959 8.18532 8.54057 8.81138 9.31193 10.86219 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023596 B = 0.003301 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.357460 B = 8479.400410 C = 9177.717680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.148 4.148 3 C 0.199 3.801 4 H 0.049 0.951 5 C -0.526 4.526 6 H 0.087 0.913 7 C 0.080 3.920 8 N -0.887 5.887 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.290 1.290 12 H -0.259 1.259 13 O -0.337 6.337 14 C 0.509 3.491 15 O -0.509 6.509 16 C -0.215 4.215 17 C 0.074 3.926 18 C -0.252 4.252 19 C 0.101 3.899 20 N -0.247 5.247 21 N -0.392 5.392 22 C 0.139 3.861 23 C -0.170 4.170 24 C 0.339 3.661 25 N -0.514 5.514 26 C 0.257 3.743 27 C -0.112 4.112 28 H 0.057 0.943 29 H 0.045 0.955 30 H 0.041 0.959 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.269 0.731 34 H 0.161 0.839 35 H 0.206 0.794 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.089 0.911 42 H 0.070 0.930 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.581 7.462 -13.344 21.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.186 4.186 3 C 0.146 3.854 4 H 0.066 0.934 5 C -0.563 4.563 6 H 0.105 0.895 7 C -0.123 4.123 8 N -0.524 5.524 9 Si 0.705 3.295 10 H -0.199 1.199 11 H -0.217 1.217 12 H -0.184 1.184 13 O -0.252 6.252 14 C 0.354 3.646 15 O -0.401 6.401 16 C -0.221 4.221 17 C 0.046 3.954 18 C -0.261 4.261 19 C -0.098 4.098 20 N -0.058 5.058 21 N -0.183 5.183 22 C 0.018 3.982 23 C -0.228 4.228 24 C 0.100 3.900 25 N -0.231 5.231 26 C 0.108 3.892 27 C -0.169 4.169 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.179 0.821 35 H 0.222 0.778 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.107 0.893 42 H 0.089 0.911 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -15.847 8.430 -14.214 22.896 hybrid contribution 0.644 -1.162 1.493 1.998 sum -15.203 7.268 -12.721 21.114 Atomic orbital electron populations 1.21905 0.96960 1.00061 1.01797 1.22365 0.94408 0.99573 1.02238 1.21000 0.96309 0.88045 0.80095 0.93359 1.20778 0.87687 1.40111 1.07765 0.89483 1.24730 0.94940 0.95264 0.97371 1.69835 1.08531 1.44353 1.29701 0.87004 0.81067 0.80141 0.81276 1.19935 1.21728 1.18379 1.86538 1.33642 1.62391 1.42640 1.20493 0.80803 0.76478 0.86842 1.90731 1.54804 1.59477 1.35039 1.19846 0.96998 1.09890 0.95354 1.21525 0.99231 0.86729 0.87869 1.20470 0.96647 1.11341 0.97672 1.25154 0.99170 0.95373 0.90077 1.76707 0.92618 1.18205 1.18232 1.48329 1.12921 1.49132 1.07875 1.21639 0.82337 0.92703 1.01526 1.22189 1.02960 0.94829 1.02836 1.19151 0.90739 0.92355 0.87782 1.66623 1.36074 1.21731 0.98663 1.21328 0.90685 0.85436 0.91786 1.21172 0.96875 1.05989 0.92844 0.92411 0.93555 0.93970 0.91230 0.91783 0.92040 0.82104 0.77779 0.88866 0.88605 0.90515 0.91880 0.91864 0.89267 0.91142 0.87301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 8.56 37.16 0.32 -2.48 16 2 C -0.15 -3.21 5.15 -26.73 -0.14 -3.35 16 3 C 0.20 4.75 1.84 -27.88 -0.05 4.70 16 4 H 0.05 1.22 6.21 -51.92 -0.32 0.90 16 5 C -0.53 -14.49 9.48 -34.44 -0.33 -14.81 16 6 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 7 C 0.08 2.24 5.45 -17.82 -0.10 2.15 16 8 N -0.89 -26.11 13.96 55.43 0.77 -25.34 16 9 Si 0.88 21.02 24.41 -169.99 -4.15 16.87 16 10 H -0.27 -6.29 6.84 56.52 0.39 -5.91 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.26 -6.06 6.52 56.52 0.37 -5.69 16 13 O -0.34 -7.20 9.13 -40.58 -0.37 -7.57 16 14 C 0.51 9.60 6.27 34.53 0.22 9.82 16 15 O -0.51 -10.01 10.52 -19.26 -0.20 -10.22 16 16 C -0.22 -3.42 5.89 -104.85 -0.62 -4.04 16 17 C 0.07 1.04 9.78 -38.57 -0.38 0.67 16 18 C -0.25 -3.33 6.36 -105.20 -0.67 -4.00 16 19 C 0.10 1.09 12.30 -15.14 -0.19 0.90 16 20 N -0.25 -2.94 12.39 31.87 0.39 -2.55 16 21 N -0.39 -4.77 3.63 -60.38 -0.22 -4.99 16 22 C 0.14 1.21 7.12 -4.04 -0.03 1.18 16 23 C -0.17 -1.32 10.24 37.16 0.38 -0.94 16 24 C 0.34 4.74 7.96 -156.09 -1.24 3.50 16 25 N -0.51 -7.44 10.27 -8.26 -0.08 -7.52 16 26 C 0.26 3.80 6.82 -82.13 -0.56 3.24 16 27 C -0.11 -1.46 8.83 36.00 0.32 -1.15 16 28 H 0.06 1.10 7.79 -51.93 -0.40 0.70 16 29 H 0.05 0.84 6.06 -51.93 -0.31 0.52 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.06 1.44 3.24 -51.93 -0.17 1.28 16 33 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.16 2.07 7.70 -52.48 -0.40 1.67 16 35 H 0.21 1.37 8.06 -52.49 -0.42 0.94 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.11 1.56 5.83 -51.93 -0.30 1.25 16 LS Contribution 351.33 15.07 5.29 5.29 Total: -1.00 -31.67 351.33 -7.37 -39.04 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -5.75 Total: 1.58 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -3.06 Total: -4.61 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: 0.86 Total: -40.40 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.57 Total: -17.79 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.15 Total: 16.87 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.67 -7.37 -39.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799627633.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.415 kcal (2) G-P(sol) polarization free energy of solvation -31.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds