Wall clock time and date at job start Tue Mar 31 2020 11:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47258 * 2 1 4 4 H 1.09008 * 109.46664 * 54.99779 * 3 2 1 5 5 C 1.50696 * 109.47383 * 175.00194 * 3 2 1 6 6 H 1.07991 * 120.00241 * 119.99889 * 5 3 2 7 7 C 1.37885 * 119.99643 * 299.72677 * 5 3 2 8 8 N 1.31511 * 119.99301 * 180.27609 * 7 5 3 9 9 Si 1.86796 * 120.00206 * 0.27145 * 7 5 3 10 10 H 1.48501 * 109.46929 * 90.00242 * 9 7 5 11 11 H 1.48500 * 109.47165 * 209.99980 * 9 7 5 12 12 H 1.48502 * 109.47244 * 330.00510 * 9 7 5 13 13 O 1.45198 * 109.47197 * 295.00423 * 3 2 1 14 14 C 1.34733 * 117.00209 * 89.99135 * 13 3 2 15 15 O 1.21493 * 119.99871 * 0.02562 * 14 13 3 16 16 C 1.47555 * 119.99989 * 179.97438 * 14 13 3 17 17 C 1.39601 * 120.41778 * 353.75037 * 16 14 13 18 18 C 1.39597 * 117.95198 * 179.97438 * 17 16 14 19 19 C 1.45977 * 134.12882 * 180.02562 * 18 17 16 20 20 N 1.30201 * 107.58498 * 179.97438 * 19 18 17 21 21 N 1.39793 * 110.14316 * 359.97438 * 20 19 18 22 22 C 1.46501 * 125.33699 * 179.97438 * 21 20 19 23 23 C 1.52995 * 109.47080 * 270.02325 * 22 21 20 24 24 C 1.36623 * 109.32818 * 0.02562 * 21 20 19 25 25 N 1.32909 * 133.27054 * 180.02562 * 24 21 20 26 26 C 1.31202 * 121.85354 * 179.67495 * 25 24 21 27 27 C 1.50695 * 119.31461 * 180.30759 * 26 25 24 28 28 H 1.09002 * 109.47281 * 299.99612 * 1 2 3 29 29 H 1.08999 * 109.47620 * 60.00152 * 1 2 3 30 30 H 1.09000 * 109.46700 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47281 * 240.00388 * 2 1 3 32 32 H 1.09003 * 109.47153 * 120.00414 * 2 1 3 33 33 H 0.97008 * 119.99496 * 179.97438 * 8 7 5 34 34 H 1.08003 * 121.02693 * 0.02562 * 17 16 14 35 35 H 1.08000 * 126.21090 * 359.92617 * 19 18 17 36 36 H 1.09006 * 109.47021 * 30.02154 * 22 21 20 37 37 H 1.09000 * 109.47120 * 150.01907 * 22 21 20 38 38 H 1.08997 * 109.47487 * 180.02562 * 23 22 21 39 39 H 1.09006 * 109.47054 * 299.99808 * 23 22 21 40 40 H 1.09000 * 109.47485 * 59.99805 * 23 22 21 41 41 H 1.09003 * 109.47257 * 263.62661 * 27 26 25 42 42 H 1.08998 * 109.47643 * 23.63114 * 27 26 25 43 43 H 1.08997 * 109.46985 * 143.62920 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8889 -0.6523 7 6 4.1430 0.8834 1.2307 8 7 5.4535 0.8899 1.3412 9 14 3.0962 0.1145 2.5731 10 1 2.8804 -1.3232 2.2701 11 1 3.7907 0.2463 3.8790 12 1 1.7851 0.8090 2.6373 13 8 1.6559 2.0917 -1.2406 14 6 0.4682 2.7278 -1.2559 15 8 -0.2272 2.7400 -0.2598 16 6 0.0126 3.4104 -2.4822 17 6 0.8577 3.5150 -3.5884 18 6 0.3739 4.1709 -4.7218 19 6 0.9322 4.4757 -6.0357 20 7 0.0226 5.1183 -6.7101 21 7 -1.1310 5.2732 -5.9360 22 6 -2.3576 5.9473 -6.3688 23 6 -2.2759 7.4330 -6.0126 24 6 -0.9349 4.6985 -4.7122 25 7 -1.6994 4.5713 -3.6324 26 6 -1.2768 3.9561 -2.5534 27 6 -2.1944 3.8388 -1.3638 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 5.8764 0.4956 2.1201 34 1 1.8549 3.1006 -3.5684 35 1 1.9207 4.2160 -6.3847 36 1 -2.4711 5.8380 -7.4474 37 1 -3.2150 5.4997 -5.8660 38 1 -3.1887 7.9345 -6.3341 39 1 -2.1624 7.5423 -4.9340 40 1 -1.4186 7.8806 -6.5153 41 1 -1.9759 4.6385 -0.6561 42 1 -3.2300 3.9190 -1.6943 43 1 -2.0410 2.8740 -0.8804 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799627633.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:56 Heat of formation + Delta-G solvation = -0.979093 kcal Electronic energy + Delta-G solvation = -26597.175155 eV Core-core repulsion = 22836.672634 eV Total energy + Delta-G solvation = -3760.502520 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.79880 -41.45211 -39.44950 -37.62638 -35.78475 -35.47145 -34.00634 -33.46119 -32.85710 -30.48620 -29.75109 -28.72250 -25.95879 -24.87012 -24.40960 -23.63581 -22.77414 -21.66981 -21.54631 -19.55603 -18.93830 -18.21765 -18.18256 -17.46255 -17.06580 -16.74935 -16.51900 -16.09363 -15.37252 -15.28846 -15.09353 -14.83085 -14.74708 -14.43243 -14.15823 -14.03320 -13.85150 -13.66707 -13.50861 -13.22890 -13.13037 -13.04436 -13.01579 -12.81441 -12.54050 -12.38533 -12.05243 -11.98518 -11.67975 -11.47402 -11.45180 -11.17342 -11.11088 -10.70407 -10.67117 -10.05176 -9.51377 -8.41105 -6.49080 -0.46995 -0.38707 0.99475 1.26855 1.32558 1.34609 1.43933 1.54242 1.86238 2.22993 2.55667 2.91689 2.92734 3.12500 3.39197 3.54578 3.66712 3.93213 4.06716 4.13761 4.15298 4.20110 4.23956 4.29740 4.36193 4.44880 4.63270 4.69365 4.70239 4.76213 4.78648 4.86309 4.99535 5.01361 5.04954 5.08841 5.13910 5.21392 5.31705 5.39168 5.44171 5.65010 5.75825 6.18740 6.27519 6.55349 6.68336 6.91041 7.15784 8.74586 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023596 B = 0.003301 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.357460 B = 8479.400410 C = 9177.717680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.147 4.147 3 C 0.204 3.796 4 H 0.035 0.965 5 C -0.537 4.537 6 H 0.049 0.951 7 C 0.031 3.969 8 N -0.931 5.931 9 Si 0.935 3.065 10 H -0.252 1.252 11 H -0.288 1.288 12 H -0.250 1.250 13 O -0.347 6.347 14 C 0.509 3.491 15 O -0.519 6.519 16 C -0.236 4.236 17 C 0.081 3.919 18 C -0.262 4.262 19 C 0.114 3.886 20 N -0.257 5.257 21 N -0.392 5.392 22 C 0.129 3.871 23 C -0.162 4.162 24 C 0.326 3.674 25 N -0.518 5.518 26 C 0.255 3.745 27 C -0.106 4.106 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.274 0.726 34 H 0.168 0.832 35 H 0.244 0.756 36 H 0.113 0.887 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.043 0.957 40 H 0.056 0.944 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.615 7.292 -14.388 23.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.184 4.184 3 C 0.150 3.850 4 H 0.053 0.947 5 C -0.574 4.574 6 H 0.067 0.933 7 C -0.169 4.169 8 N -0.570 5.570 9 Si 0.760 3.240 10 H -0.178 1.178 11 H -0.215 1.215 12 H -0.174 1.174 13 O -0.263 6.263 14 C 0.355 3.645 15 O -0.411 6.411 16 C -0.242 4.242 17 C 0.054 3.946 18 C -0.271 4.271 19 C -0.085 4.085 20 N -0.068 5.068 21 N -0.182 5.182 22 C 0.010 3.990 23 C -0.220 4.220 24 C 0.085 3.915 25 N -0.234 5.234 26 C 0.105 3.895 27 C -0.163 4.163 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.186 0.814 35 H 0.260 0.740 36 H 0.131 0.869 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -17.910 8.281 -15.302 24.970 hybrid contribution 1.294 -0.968 1.628 2.294 sum -16.616 7.312 -13.675 22.728 Atomic orbital electron populations 1.21818 0.94408 1.01963 1.01644 1.22274 0.96634 0.97461 1.02074 1.20673 0.93839 0.89709 0.80788 0.94706 1.20983 0.89764 1.39708 1.06982 0.93315 1.25538 0.96015 0.95669 0.99685 1.69961 1.10423 1.45737 1.30851 0.86046 0.79578 0.80292 0.78040 1.17782 1.21470 1.17425 1.86513 1.35390 1.63114 1.41322 1.20915 0.79750 0.75994 0.87832 1.90720 1.54782 1.59867 1.35725 1.19705 0.98122 1.11628 0.94759 1.21604 0.99210 0.86133 0.87673 1.20688 0.96795 1.11246 0.98411 1.25790 1.00279 0.93862 0.88523 1.76726 0.92856 1.18731 1.18472 1.48719 1.13752 1.48573 1.07159 1.21966 0.81275 0.92957 1.02803 1.22132 1.04068 0.94374 1.01421 1.19473 0.91187 0.92541 0.88305 1.66668 1.36123 1.21886 0.98751 1.21503 0.90437 0.85162 0.92376 1.21122 0.97723 1.05228 0.92245 0.92922 0.93382 0.90999 0.90954 0.92351 0.91673 0.81447 0.74020 0.86879 0.88110 0.87815 0.93801 0.92504 0.89175 0.89161 0.88488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.97 8.56 71.98 0.62 -4.36 16 2 C -0.15 -6.20 5.15 30.59 0.16 -6.04 16 3 C 0.20 9.83 1.84 29.85 0.05 9.88 16 4 H 0.04 1.77 6.21 -2.38 -0.01 1.76 16 5 C -0.54 -30.49 9.48 25.60 0.24 -30.25 16 6 H 0.05 3.05 8.06 -2.92 -0.02 3.03 16 7 C 0.03 1.73 5.45 84.66 0.46 2.19 16 8 N -0.93 -56.17 13.96 21.45 0.30 -55.87 16 9 Si 0.94 43.12 24.41 68.60 1.67 44.80 16 10 H -0.25 -10.79 6.84 99.48 0.68 -10.11 16 11 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 12 H -0.25 -11.10 6.52 99.48 0.65 -10.45 16 13 O -0.35 -15.08 9.13 -56.43 -0.52 -15.59 16 14 C 0.51 19.27 6.27 70.28 0.44 19.71 16 15 O -0.52 -20.36 10.52 19.86 0.21 -20.16 16 16 C -0.24 -7.47 5.89 -20.01 -0.12 -7.59 16 17 C 0.08 2.24 9.78 22.93 0.22 2.47 16 18 C -0.26 -6.58 6.36 -20.24 -0.13 -6.71 16 19 C 0.11 2.19 12.30 86.94 1.07 3.26 16 20 N -0.26 -5.58 12.39 -53.07 -0.66 -6.23 16 21 N -0.39 -8.84 3.63 -344.94 -1.25 -10.09 16 22 C 0.13 2.00 7.12 86.38 0.61 2.61 16 23 C -0.16 -2.22 10.24 71.98 0.74 -1.48 16 24 C 0.33 8.68 7.96 134.20 1.07 9.75 16 25 N -0.52 -14.43 10.27 -180.04 -1.85 -16.28 16 26 C 0.26 7.38 6.82 43.13 0.29 7.68 16 27 C -0.11 -2.69 8.83 71.23 0.63 -2.06 16 28 H 0.05 1.90 7.79 -2.39 -0.02 1.88 16 29 H 0.05 1.66 6.06 -2.39 -0.01 1.64 16 30 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 32 H 0.06 2.52 3.24 -2.39 -0.01 2.51 16 33 H 0.27 15.31 8.31 -92.70 -0.77 14.54 16 34 H 0.17 4.28 7.70 -2.91 -0.02 4.25 16 35 H 0.24 2.45 8.06 -2.91 -0.02 2.43 16 36 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 37 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.04 0.77 8.14 -2.38 -0.02 0.75 16 40 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.10 2.72 5.83 -2.39 -0.01 2.70 16 Total: -1.00 -69.49 351.33 5.22 -64.27 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 0.95 Total: 16.10 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: 6.36 Total: -0.94 kcal Atomic # 7 Polarization: -85.02 SS G_CDS: -3.46 Total: -88.48 kcal Atomic # 8 Polarization: -35.44 SS G_CDS: -0.31 Total: -35.75 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 1.67 Total: 44.80 kcal Total: -69.49 5.22 -64.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799627633.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.288 kcal (2) G-P(sol) polarization free energy of solvation -69.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds