Wall clock time and date at job start Tue Mar 31 2020 12:53:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.08994 * 109.47339 * 2 1
4 4 C 1.52996 * 109.47118 * 240.00051 * 2 1 3
5 5 C 1.53003 * 109.47301 * 179.97438 * 4 2 1
6 6 C 1.52996 * 109.46915 * 60.00084 * 5 4 2
7 7 H 1.08994 * 109.47269 * 60.00462 * 6 5 4
8 8 C 1.50702 * 109.46842 * 180.02562 * 6 5 4
9 9 O 1.21283 * 120.00262 * 120.00231 * 8 6 5
10 10 N 1.34777 * 119.99928 * 299.72137 * 8 6 5
11 11 S 1.65603 * 120.00017 * 180.27533 * 10 8 6
12 12 O 1.42102 * 104.27468 * 181.07230 * 11 10 8
13 13 O 1.42102 * 104.27712 * 308.93122 * 11 10 8
14 14 C 1.81398 * 104.44829 * 65.00347 * 11 10 8
15 15 C 1.53003 * 109.47288 * 180.02562 * 14 11 10
16 16 C 1.50703 * 109.47047 * 180.02562 * 15 14 11
17 17 H 1.07996 * 119.99975 * 359.97438 * 16 15 14
18 18 C 1.37879 * 119.99472 * 179.97438 * 16 15 14
19 19 N 1.31518 * 120.00199 * 0.02562 * 18 16 15
20 20 Si 1.86794 * 119.99677 * 179.97438 * 18 16 15
21 21 H 1.48510 * 109.47342 * 0.02562 * 20 18 16
22 22 H 1.48498 * 109.47287 * 120.00084 * 20 18 16
23 23 H 1.48508 * 109.47497 * 240.00347 * 20 18 16
24 24 C 1.52996 * 109.47068 * 300.00059 * 6 5 4
25 25 C 1.52994 * 109.47118 * 60.00176 * 24 6 5
26 26 H 1.09001 * 109.47062 * 179.97438 * 25 24 6
27 27 C 1.53000 * 109.47120 * 59.99950 * 25 24 6
28 28 H 1.09000 * 109.47504 * 179.97438 * 1 2 3
29 29 H 1.09001 * 109.47066 * 299.99949 * 1 2 3
30 30 H 1.09004 * 109.47607 * 59.99650 * 1 2 3
31 31 H 1.09004 * 109.47066 * 60.00025 * 4 2 1
32 32 H 1.09000 * 109.47665 * 300.00216 * 4 2 1
33 33 H 1.09002 * 109.46620 * 299.99963 * 5 4 2
34 34 H 1.09001 * 109.47245 * 180.02562 * 5 4 2
35 35 H 0.97000 * 120.00317 * 0.28382 * 10 8 6
36 36 H 1.08997 * 109.46903 * 300.00169 * 14 11 10
37 37 H 1.09003 * 109.47146 * 60.00111 * 14 11 10
38 38 H 1.09004 * 109.46860 * 299.99854 * 15 14 11
39 39 H 1.08996 * 109.46792 * 59.99595 * 15 14 11
40 40 H 0.96997 * 119.99920 * 179.97438 * 19 18 16
41 41 H 1.09004 * 109.47066 * 180.02562 * 24 6 5
42 42 H 1.09000 * 109.47234 * 299.99642 * 24 6 5
43 43 H 1.09001 * 109.47192 * 299.99973 * 27 25 24
44 44 H 1.09004 * 109.47131 * 59.99985 * 27 25 24
45 45 H 1.09003 * 109.47049 * 179.97438 * 27 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0399 -0.7212 -1.2492
5 6 3.5700 -0.7207 -1.2496
6 6 4.0804 -1.4416 -0.0004
7 1 3.7176 -2.4693 -0.0002
8 6 5.5875 -1.4405 -0.0004
9 8 6.1936 -0.9150 0.9092
10 7 6.2617 -2.0285 -1.0085
11 16 7.9177 -2.0333 -1.0051
12 8 8.2686 -2.7034 -2.2081
13 8 8.2717 -0.6734 -0.7939
14 6 8.3645 -3.0387 0.4371
15 6 9.8882 -3.1192 0.5506
16 6 10.2593 -3.9550 1.7484
17 1 9.4858 -4.3853 2.3671
18 6 11.5864 -4.1702 2.0543
19 7 12.5283 -3.6457 1.3011
20 14 12.0464 -5.2056 3.5394
21 1 10.8113 -5.6762 4.2166
22 1 12.8453 -6.3770 3.0980
23 1 12.8483 -4.3873 4.4843
24 6 3.5705 -0.7204 1.2488
25 6 2.0405 -0.7209 1.2491
26 1 1.6772 -0.2075 2.1394
27 6 1.5310 -2.1636 1.2494
28 1 -0.3634 -1.0276 -0.0005
29 1 -0.3633 0.5138 0.8900
30 1 -0.3634 0.5139 -0.8900
31 1 1.6766 -0.2074 -2.1392
32 1 1.6766 -1.7489 -1.2493
33 1 3.9329 0.3072 -1.2498
34 1 3.9333 -1.2341 -2.1398
35 1 5.7770 -2.4488 -1.7360
36 1 7.9570 -2.5817 1.3389
37 1 7.9549 -4.0422 0.3214
38 1 10.2960 -3.5760 -0.3512
39 1 10.2973 -2.1156 0.6664
40 1 13.4619 -3.7968 1.5166
41 1 3.9345 -1.2337 2.1388
42 1 3.9335 0.3074 1.2487
43 1 1.8944 -2.6774 0.3595
44 1 1.8948 -2.6772 2.1394
45 1 0.4410 -2.1640 1.2501
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000835273029.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:53:43
Heat of formation + Delta-G solvation = -150.168634 kcal
Electronic energy + Delta-G solvation = -25434.715438 eV
Core-core repulsion = 21770.894775 eV
Total energy + Delta-G solvation = -3663.820664 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 317.149 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-40.82559 -38.88841 -36.68435 -35.60508 -34.54497 -33.89255 -33.10738 -32.02842
-31.17818 -28.09013 -26.52336 -25.61706 -23.23045 -22.71971 -21.68042 -20.90790
-19.39099 -18.72939 -18.04131 -17.48012 -16.50614 -16.13664 -15.67933 -15.27596
-15.00702 -14.87722 -14.54566 -14.48159 -14.34598 -13.66310 -13.52086 -13.37669
-12.87347 -12.82906 -12.54946 -12.38340 -12.23513 -11.98420 -11.79699 -11.71741
-11.61771 -11.59408 -11.38147 -11.13351 -11.08973 -10.99070 -10.82759 -10.79621
-10.46917 -10.38873 -10.34533 -10.26034 -9.99208 -9.69686 -9.16489 -8.49950
-6.11990 -4.17325 0.51912 2.11377 2.75944 3.26520 3.33565 3.37386
3.96883 4.12295 4.22799 4.32980 4.37828 4.54346 4.67434 4.72360
4.74168 4.90500 4.96061 5.01396 5.10494 5.12631 5.23425 5.25609
5.31154 5.41948 5.48941 5.58869 5.60946 5.62914 5.70352 5.72979
5.75310 5.77046 5.91270 5.92945 6.02943 6.09869 6.22568 6.46308
6.66412 7.28865 7.35474 7.50413 7.81384 8.17117 8.85921 9.47245
10.99232
Molecular weight = 317.15amu
Principal moments of inertia in cm(-1)
A = 0.021212 B = 0.003086 C = 0.002815
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1319.661348 B = 9070.434858 C = 9944.136586
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.091 4.091
3 H 0.071 0.929
4 C -0.113 4.113
5 C -0.115 4.115
6 C -0.109 4.109
7 H 0.109 0.891
8 C 0.535 3.465
9 O -0.487 6.487
10 N -1.059 6.059
11 S 2.565 3.435
12 O -0.956 6.956
13 O -0.939 6.939
14 C -0.576 4.576
15 C 0.029 3.971
16 C -0.518 4.518
17 H 0.063 0.937
18 C 0.057 3.943
19 N -0.890 5.890
20 Si 0.901 3.099
21 H -0.272 1.272
22 H -0.282 1.282
23 H -0.282 1.282
24 C -0.100 4.100
25 C -0.086 4.086
26 H 0.074 0.926
27 C -0.156 4.156
28 H 0.058 0.942
29 H 0.053 0.947
30 H 0.052 0.948
31 H 0.066 0.934
32 H 0.069 0.931
33 H 0.073 0.927
34 H 0.070 0.930
35 H 0.427 0.573
36 H 0.131 0.869
37 H 0.121 0.879
38 H 0.034 0.966
39 H 0.036 0.964
40 H 0.265 0.735
41 H 0.075 0.925
42 H 0.074 0.926
43 H 0.060 0.940
44 H 0.055 0.945
45 H 0.057 0.943
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -26.071 3.912 -4.411 26.729
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.109 4.109
3 H 0.090 0.910
4 C -0.151 4.151
5 C -0.153 4.153
6 C -0.132 4.132
7 H 0.127 0.873
8 C 0.321 3.679
9 O -0.358 6.358
10 N -0.821 5.821
11 S 2.665 3.335
12 O -0.947 6.947
13 O -0.929 6.929
14 C -0.710 4.710
15 C -0.010 4.010
16 C -0.558 4.558
17 H 0.081 0.919
18 C -0.145 4.145
19 N -0.529 5.529
20 Si 0.729 3.271
21 H -0.196 1.196
22 H -0.208 1.208
23 H -0.207 1.207
24 C -0.138 4.138
25 C -0.104 4.104
26 H 0.092 0.908
27 C -0.213 4.213
28 H 0.077 0.923
29 H 0.072 0.928
30 H 0.071 0.929
31 H 0.085 0.915
32 H 0.088 0.912
33 H 0.091 0.909
34 H 0.089 0.911
35 H 0.262 0.738
36 H 0.149 0.851
37 H 0.139 0.861
38 H 0.052 0.948
39 H 0.054 0.946
40 H 0.074 0.926
41 H 0.094 0.906
42 H 0.093 0.907
43 H 0.079 0.921
44 H 0.074 0.926
45 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -24.932 4.812 -4.423 25.775
hybrid contribution -0.048 -1.178 0.803 1.426
sum -24.980 3.634 -3.620 25.501
Atomic orbital electron populations
1.21884 0.95258 1.01933 1.01544 1.21185 0.95439 0.99646 0.94644
0.91020 1.21621 0.94274 1.01340 0.97835 1.21575 0.96494 1.01472
0.95774 1.21524 0.89973 1.03106 0.98585 0.87331 1.20726 0.91537
0.75394 0.80213 1.90903 1.70264 1.40655 1.33972 1.55435 1.30483
1.64380 1.31756 1.06706 0.72168 0.76715 0.77916 1.93587 1.80186
1.76985 1.43895 1.93595 1.79879 1.32604 1.86817 1.30337 1.11408
1.12668 1.16613 1.18995 0.82775 0.99484 0.99747 1.21017 0.92088
1.31886 1.10781 0.91915 1.25072 0.96434 0.95970 0.97050 1.69966
1.00285 1.44175 1.38438 0.86389 0.78572 0.79900 0.82279 1.19615
1.20799 1.20749 1.21466 0.94516 1.01633 0.96210 1.21141 0.94730
0.96568 0.98001 0.90753 1.22031 1.01060 0.96123 1.02074 0.92332
0.92752 0.92870 0.91516 0.91230 0.90860 0.91131 0.73782 0.85094
0.86087 0.94773 0.94585 0.92559 0.90636 0.90722 0.92136 0.92582
0.92414
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.80 8.84 37.15 0.33 -0.47 16
2 C -0.09 -0.57 2.49 -90.63 -0.23 -0.80 16
3 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16
4 C -0.11 -0.67 4.93 -26.73 -0.13 -0.80 16
5 C -0.12 -0.86 5.10 -26.73 -0.14 -0.99 16
6 C -0.11 -0.97 2.25 -91.77 -0.21 -1.18 16
7 H 0.11 0.74 6.43 -51.93 -0.33 0.41 16
8 C 0.54 7.09 6.89 -10.98 -0.08 7.01 16
9 O -0.49 -8.49 14.08 -11.58 -0.16 -8.66 16
10 N -1.06 -13.51 5.50 31.22 0.17 -13.34 16
11 S 2.56 47.21 5.11 -107.50 -0.55 46.66 16
12 O -0.96 -19.10 18.08 -57.54 -1.04 -20.14 16
13 O -0.94 -20.86 17.04 -64.79 -1.10 -21.97 16
14 C -0.58 -11.58 5.82 37.16 0.22 -11.36 16
15 C 0.03 0.76 4.98 -27.88 -0.14 0.63 16
16 C -0.52 -14.60 9.11 -34.44 -0.31 -14.92 16
17 H 0.06 1.68 7.74 -52.49 -0.41 1.28 16
18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16
19 N -0.89 -26.78 13.29 55.43 0.74 -26.05 16
20 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16
21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16
22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16
23 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16
24 C -0.10 -0.92 4.02 -26.74 -0.11 -1.03 16
25 C -0.09 -0.60 2.72 -90.62 -0.25 -0.84 16
26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16
27 C -0.16 -0.96 8.15 37.16 0.30 -0.66 16
28 H 0.06 0.30 6.43 -51.93 -0.33 -0.04 16
29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16
30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16
31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16
32 H 0.07 0.37 6.43 -51.93 -0.33 0.03 16
33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16
34 H 0.07 0.43 7.58 -51.93 -0.39 0.04 16
35 H 0.43 3.66 8.22 -34.47 -0.28 3.37 16
36 H 0.13 2.59 7.19 -51.93 -0.37 2.22 16
37 H 0.12 2.09 8.14 -51.92 -0.42 1.67 16
38 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16
39 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16
40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16
41 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16
42 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16
43 H 0.06 0.34 4.81 -51.93 -0.25 0.09 16
44 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16
45 H 0.06 0.31 6.43 -51.93 -0.33 -0.02 16
LS Contribution 361.91 15.07 5.45 5.45
Total: -1.00 -36.34 361.91 -9.59 -45.93
By element:
Atomic # 1 Polarization: 6.75 SS G_CDS: -7.25 Total: -0.49 kcal
Atomic # 6 Polarization: -23.03 SS G_CDS: -0.83 Total: -23.86 kcal
Atomic # 7 Polarization: -40.29 SS G_CDS: 0.91 Total: -39.39 kcal
Atomic # 8 Polarization: -48.46 SS G_CDS: -2.31 Total: -50.77 kcal
Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal
Atomic # 16 Polarization: 47.21 SS G_CDS: -0.55 Total: 46.66 kcal
Total LS contribution 5.45 Total: 5.45 kcal
Total: -36.34 -9.59 -45.93 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000835273029.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -104.238 kcal
(2) G-P(sol) polarization free energy of solvation -36.337 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.575 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.594 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.930 kcal
(6) G-S(sol) free energy of system = (1) + (5) -150.169 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds