Wall clock time and date at job start Tue Mar 31 2020 12:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 109.47339 * 2 1 4 4 C 1.52996 * 109.47118 * 240.00051 * 2 1 3 5 5 C 1.53003 * 109.47301 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.46915 * 60.00084 * 5 4 2 7 7 H 1.08994 * 109.47269 * 60.00462 * 6 5 4 8 8 C 1.50702 * 109.46842 * 180.02562 * 6 5 4 9 9 O 1.21283 * 120.00262 * 120.00231 * 8 6 5 10 10 N 1.34777 * 119.99928 * 299.72137 * 8 6 5 11 11 S 1.65603 * 120.00017 * 180.27533 * 10 8 6 12 12 O 1.42102 * 104.27468 * 181.07230 * 11 10 8 13 13 O 1.42102 * 104.27712 * 308.93122 * 11 10 8 14 14 C 1.81398 * 104.44829 * 65.00347 * 11 10 8 15 15 C 1.53003 * 109.47288 * 180.02562 * 14 11 10 16 16 C 1.50703 * 109.47047 * 180.02562 * 15 14 11 17 17 H 1.07996 * 119.99975 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99472 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00199 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99677 * 179.97438 * 18 16 15 21 21 H 1.48510 * 109.47342 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47287 * 120.00084 * 20 18 16 23 23 H 1.48508 * 109.47497 * 240.00347 * 20 18 16 24 24 C 1.52996 * 109.47068 * 300.00059 * 6 5 4 25 25 C 1.52994 * 109.47118 * 60.00176 * 24 6 5 26 26 H 1.09001 * 109.47062 * 179.97438 * 25 24 6 27 27 C 1.53000 * 109.47120 * 59.99950 * 25 24 6 28 28 H 1.09000 * 109.47504 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47066 * 299.99949 * 1 2 3 30 30 H 1.09004 * 109.47607 * 59.99650 * 1 2 3 31 31 H 1.09004 * 109.47066 * 60.00025 * 4 2 1 32 32 H 1.09000 * 109.47665 * 300.00216 * 4 2 1 33 33 H 1.09002 * 109.46620 * 299.99963 * 5 4 2 34 34 H 1.09001 * 109.47245 * 180.02562 * 5 4 2 35 35 H 0.97000 * 120.00317 * 0.28382 * 10 8 6 36 36 H 1.08997 * 109.46903 * 300.00169 * 14 11 10 37 37 H 1.09003 * 109.47146 * 60.00111 * 14 11 10 38 38 H 1.09004 * 109.46860 * 299.99854 * 15 14 11 39 39 H 1.08996 * 109.46792 * 59.99595 * 15 14 11 40 40 H 0.96997 * 119.99920 * 179.97438 * 19 18 16 41 41 H 1.09004 * 109.47066 * 180.02562 * 24 6 5 42 42 H 1.09000 * 109.47234 * 299.99642 * 24 6 5 43 43 H 1.09001 * 109.47192 * 299.99973 * 27 25 24 44 44 H 1.09004 * 109.47131 * 59.99985 * 27 25 24 45 45 H 1.09003 * 109.47049 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 3.5700 -0.7207 -1.2496 6 6 4.0804 -1.4416 -0.0004 7 1 3.7176 -2.4693 -0.0002 8 6 5.5875 -1.4405 -0.0004 9 8 6.1936 -0.9150 0.9092 10 7 6.2617 -2.0285 -1.0085 11 16 7.9177 -2.0333 -1.0051 12 8 8.2686 -2.7034 -2.2081 13 8 8.2717 -0.6734 -0.7939 14 6 8.3645 -3.0387 0.4371 15 6 9.8882 -3.1192 0.5506 16 6 10.2593 -3.9550 1.7484 17 1 9.4858 -4.3853 2.3671 18 6 11.5864 -4.1702 2.0543 19 7 12.5283 -3.6457 1.3011 20 14 12.0464 -5.2056 3.5394 21 1 10.8113 -5.6762 4.2166 22 1 12.8453 -6.3770 3.0980 23 1 12.8483 -4.3873 4.4843 24 6 3.5705 -0.7204 1.2488 25 6 2.0405 -0.7209 1.2491 26 1 1.6772 -0.2075 2.1394 27 6 1.5310 -2.1636 1.2494 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.6766 -0.2074 -2.1392 32 1 1.6766 -1.7489 -1.2493 33 1 3.9329 0.3072 -1.2498 34 1 3.9333 -1.2341 -2.1398 35 1 5.7770 -2.4488 -1.7360 36 1 7.9570 -2.5817 1.3389 37 1 7.9549 -4.0422 0.3214 38 1 10.2960 -3.5760 -0.3512 39 1 10.2973 -2.1156 0.6664 40 1 13.4619 -3.7968 1.5166 41 1 3.9345 -1.2337 2.1388 42 1 3.9335 0.3074 1.2487 43 1 1.8944 -2.6774 0.3595 44 1 1.8948 -2.6772 2.1394 45 1 0.4410 -2.1640 1.2501 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835273029.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:43 Heat of formation + Delta-G solvation = -150.168634 kcal Electronic energy + Delta-G solvation = -25434.715438 eV Core-core repulsion = 21770.894775 eV Total energy + Delta-G solvation = -3663.820664 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.82559 -38.88841 -36.68435 -35.60508 -34.54497 -33.89255 -33.10738 -32.02842 -31.17818 -28.09013 -26.52336 -25.61706 -23.23045 -22.71971 -21.68042 -20.90790 -19.39099 -18.72939 -18.04131 -17.48012 -16.50614 -16.13664 -15.67933 -15.27596 -15.00702 -14.87722 -14.54566 -14.48159 -14.34598 -13.66310 -13.52086 -13.37669 -12.87347 -12.82906 -12.54946 -12.38340 -12.23513 -11.98420 -11.79699 -11.71741 -11.61771 -11.59408 -11.38147 -11.13351 -11.08973 -10.99070 -10.82759 -10.79621 -10.46917 -10.38873 -10.34533 -10.26034 -9.99208 -9.69686 -9.16489 -8.49950 -6.11990 -4.17325 0.51912 2.11377 2.75944 3.26520 3.33565 3.37386 3.96883 4.12295 4.22799 4.32980 4.37828 4.54346 4.67434 4.72360 4.74168 4.90500 4.96061 5.01396 5.10494 5.12631 5.23425 5.25609 5.31154 5.41948 5.48941 5.58869 5.60946 5.62914 5.70352 5.72979 5.75310 5.77046 5.91270 5.92945 6.02943 6.09869 6.22568 6.46308 6.66412 7.28865 7.35474 7.50413 7.81384 8.17117 8.85921 9.47245 10.99232 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021212 B = 0.003086 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.661348 B = 9070.434858 C = 9944.136586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.091 4.091 3 H 0.071 0.929 4 C -0.113 4.113 5 C -0.115 4.115 6 C -0.109 4.109 7 H 0.109 0.891 8 C 0.535 3.465 9 O -0.487 6.487 10 N -1.059 6.059 11 S 2.565 3.435 12 O -0.956 6.956 13 O -0.939 6.939 14 C -0.576 4.576 15 C 0.029 3.971 16 C -0.518 4.518 17 H 0.063 0.937 18 C 0.057 3.943 19 N -0.890 5.890 20 Si 0.901 3.099 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.100 4.100 25 C -0.086 4.086 26 H 0.074 0.926 27 C -0.156 4.156 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.427 0.573 36 H 0.131 0.869 37 H 0.121 0.879 38 H 0.034 0.966 39 H 0.036 0.964 40 H 0.265 0.735 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.055 0.945 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.071 3.912 -4.411 26.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.109 4.109 3 H 0.090 0.910 4 C -0.151 4.151 5 C -0.153 4.153 6 C -0.132 4.132 7 H 0.127 0.873 8 C 0.321 3.679 9 O -0.358 6.358 10 N -0.821 5.821 11 S 2.665 3.335 12 O -0.947 6.947 13 O -0.929 6.929 14 C -0.710 4.710 15 C -0.010 4.010 16 C -0.558 4.558 17 H 0.081 0.919 18 C -0.145 4.145 19 N -0.529 5.529 20 Si 0.729 3.271 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.207 1.207 24 C -0.138 4.138 25 C -0.104 4.104 26 H 0.092 0.908 27 C -0.213 4.213 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.262 0.738 36 H 0.149 0.851 37 H 0.139 0.861 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.074 0.926 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -24.932 4.812 -4.423 25.775 hybrid contribution -0.048 -1.178 0.803 1.426 sum -24.980 3.634 -3.620 25.501 Atomic orbital electron populations 1.21884 0.95258 1.01933 1.01544 1.21185 0.95439 0.99646 0.94644 0.91020 1.21621 0.94274 1.01340 0.97835 1.21575 0.96494 1.01472 0.95774 1.21524 0.89973 1.03106 0.98585 0.87331 1.20726 0.91537 0.75394 0.80213 1.90903 1.70264 1.40655 1.33972 1.55435 1.30483 1.64380 1.31756 1.06706 0.72168 0.76715 0.77916 1.93587 1.80186 1.76985 1.43895 1.93595 1.79879 1.32604 1.86817 1.30337 1.11408 1.12668 1.16613 1.18995 0.82775 0.99484 0.99747 1.21017 0.92088 1.31886 1.10781 0.91915 1.25072 0.96434 0.95970 0.97050 1.69966 1.00285 1.44175 1.38438 0.86389 0.78572 0.79900 0.82279 1.19615 1.20799 1.20749 1.21466 0.94516 1.01633 0.96210 1.21141 0.94730 0.96568 0.98001 0.90753 1.22031 1.01060 0.96123 1.02074 0.92332 0.92752 0.92870 0.91516 0.91230 0.90860 0.91131 0.73782 0.85094 0.86087 0.94773 0.94585 0.92559 0.90636 0.90722 0.92136 0.92582 0.92414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 8.84 37.15 0.33 -0.47 16 2 C -0.09 -0.57 2.49 -90.63 -0.23 -0.80 16 3 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 4 C -0.11 -0.67 4.93 -26.73 -0.13 -0.80 16 5 C -0.12 -0.86 5.10 -26.73 -0.14 -0.99 16 6 C -0.11 -0.97 2.25 -91.77 -0.21 -1.18 16 7 H 0.11 0.74 6.43 -51.93 -0.33 0.41 16 8 C 0.54 7.09 6.89 -10.98 -0.08 7.01 16 9 O -0.49 -8.49 14.08 -11.58 -0.16 -8.66 16 10 N -1.06 -13.51 5.50 31.22 0.17 -13.34 16 11 S 2.56 47.21 5.11 -107.50 -0.55 46.66 16 12 O -0.96 -19.10 18.08 -57.54 -1.04 -20.14 16 13 O -0.94 -20.86 17.04 -64.79 -1.10 -21.97 16 14 C -0.58 -11.58 5.82 37.16 0.22 -11.36 16 15 C 0.03 0.76 4.98 -27.88 -0.14 0.63 16 16 C -0.52 -14.60 9.11 -34.44 -0.31 -14.92 16 17 H 0.06 1.68 7.74 -52.49 -0.41 1.28 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -26.78 13.29 55.43 0.74 -26.05 16 20 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 24 C -0.10 -0.92 4.02 -26.74 -0.11 -1.03 16 25 C -0.09 -0.60 2.72 -90.62 -0.25 -0.84 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 C -0.16 -0.96 8.15 37.16 0.30 -0.66 16 28 H 0.06 0.30 6.43 -51.93 -0.33 -0.04 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.37 6.43 -51.93 -0.33 0.03 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.43 7.58 -51.93 -0.39 0.04 16 35 H 0.43 3.66 8.22 -34.47 -0.28 3.37 16 36 H 0.13 2.59 7.19 -51.93 -0.37 2.22 16 37 H 0.12 2.09 8.14 -51.92 -0.42 1.67 16 38 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 42 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 43 H 0.06 0.34 4.81 -51.93 -0.25 0.09 16 44 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.06 0.31 6.43 -51.93 -0.33 -0.02 16 LS Contribution 361.91 15.07 5.45 5.45 Total: -1.00 -36.34 361.91 -9.59 -45.93 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -7.25 Total: -0.49 kcal Atomic # 6 Polarization: -23.03 SS G_CDS: -0.83 Total: -23.86 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: 0.91 Total: -39.39 kcal Atomic # 8 Polarization: -48.46 SS G_CDS: -2.31 Total: -50.77 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: 47.21 SS G_CDS: -0.55 Total: 46.66 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.34 -9.59 -45.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835273029.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.238 kcal (2) G-P(sol) polarization free energy of solvation -36.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds