Wall clock time and date at job start Tue Mar 31 2020 12:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 109.47339 * 2 1 4 4 C 1.52996 * 109.47118 * 240.00051 * 2 1 3 5 5 C 1.53003 * 109.47301 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.46915 * 60.00084 * 5 4 2 7 7 H 1.08994 * 109.47269 * 60.00462 * 6 5 4 8 8 C 1.50702 * 109.46842 * 180.02562 * 6 5 4 9 9 O 1.21283 * 120.00262 * 120.00231 * 8 6 5 10 10 N 1.34777 * 119.99928 * 299.72137 * 8 6 5 11 11 S 1.65603 * 120.00017 * 180.27533 * 10 8 6 12 12 O 1.42102 * 104.27468 * 181.07230 * 11 10 8 13 13 O 1.42102 * 104.27712 * 308.93122 * 11 10 8 14 14 C 1.81398 * 104.44829 * 65.00347 * 11 10 8 15 15 C 1.53003 * 109.47288 * 180.02562 * 14 11 10 16 16 C 1.50703 * 109.47047 * 180.02562 * 15 14 11 17 17 H 1.07996 * 119.99975 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99472 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00199 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99677 * 179.97438 * 18 16 15 21 21 H 1.48510 * 109.47342 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47287 * 120.00084 * 20 18 16 23 23 H 1.48508 * 109.47497 * 240.00347 * 20 18 16 24 24 C 1.52996 * 109.47068 * 300.00059 * 6 5 4 25 25 C 1.52994 * 109.47118 * 60.00176 * 24 6 5 26 26 H 1.09001 * 109.47062 * 179.97438 * 25 24 6 27 27 C 1.53000 * 109.47120 * 59.99950 * 25 24 6 28 28 H 1.09000 * 109.47504 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47066 * 299.99949 * 1 2 3 30 30 H 1.09004 * 109.47607 * 59.99650 * 1 2 3 31 31 H 1.09004 * 109.47066 * 60.00025 * 4 2 1 32 32 H 1.09000 * 109.47665 * 300.00216 * 4 2 1 33 33 H 1.09002 * 109.46620 * 299.99963 * 5 4 2 34 34 H 1.09001 * 109.47245 * 180.02562 * 5 4 2 35 35 H 0.97000 * 120.00317 * 0.28382 * 10 8 6 36 36 H 1.08997 * 109.46903 * 300.00169 * 14 11 10 37 37 H 1.09003 * 109.47146 * 60.00111 * 14 11 10 38 38 H 1.09004 * 109.46860 * 299.99854 * 15 14 11 39 39 H 1.08996 * 109.46792 * 59.99595 * 15 14 11 40 40 H 0.96997 * 119.99920 * 179.97438 * 19 18 16 41 41 H 1.09004 * 109.47066 * 180.02562 * 24 6 5 42 42 H 1.09000 * 109.47234 * 299.99642 * 24 6 5 43 43 H 1.09001 * 109.47192 * 299.99973 * 27 25 24 44 44 H 1.09004 * 109.47131 * 59.99985 * 27 25 24 45 45 H 1.09003 * 109.47049 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 3.5700 -0.7207 -1.2496 6 6 4.0804 -1.4416 -0.0004 7 1 3.7176 -2.4693 -0.0002 8 6 5.5875 -1.4405 -0.0004 9 8 6.1936 -0.9150 0.9092 10 7 6.2617 -2.0285 -1.0085 11 16 7.9177 -2.0333 -1.0051 12 8 8.2686 -2.7034 -2.2081 13 8 8.2717 -0.6734 -0.7939 14 6 8.3645 -3.0387 0.4371 15 6 9.8882 -3.1192 0.5506 16 6 10.2593 -3.9550 1.7484 17 1 9.4858 -4.3853 2.3671 18 6 11.5864 -4.1702 2.0543 19 7 12.5283 -3.6457 1.3011 20 14 12.0464 -5.2056 3.5394 21 1 10.8113 -5.6762 4.2166 22 1 12.8453 -6.3770 3.0980 23 1 12.8483 -4.3873 4.4843 24 6 3.5705 -0.7204 1.2488 25 6 2.0405 -0.7209 1.2491 26 1 1.6772 -0.2075 2.1394 27 6 1.5310 -2.1636 1.2494 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.6766 -0.2074 -2.1392 32 1 1.6766 -1.7489 -1.2493 33 1 3.9329 0.3072 -1.2498 34 1 3.9333 -1.2341 -2.1398 35 1 5.7770 -2.4488 -1.7360 36 1 7.9570 -2.5817 1.3389 37 1 7.9549 -4.0422 0.3214 38 1 10.2960 -3.5760 -0.3512 39 1 10.2973 -2.1156 0.6664 40 1 13.4619 -3.7968 1.5166 41 1 3.9345 -1.2337 2.1388 42 1 3.9335 0.3074 1.2487 43 1 1.8944 -2.6774 0.3595 44 1 1.8948 -2.6772 2.1394 45 1 0.4410 -2.1640 1.2501 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835273029.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:42 Heat of formation + Delta-G solvation = -175.857905 kcal Electronic energy + Delta-G solvation = -25435.829409 eV Core-core repulsion = 21770.894775 eV Total energy + Delta-G solvation = -3664.934634 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.77560 -39.69390 -38.29653 -37.24933 -35.98995 -35.70454 -33.78529 -33.19828 -32.57703 -28.63834 -27.68400 -27.12386 -24.14923 -23.60656 -23.25014 -21.78325 -20.76499 -19.45541 -19.27267 -18.88764 -18.31094 -17.36791 -16.82709 -16.65357 -16.56021 -16.22005 -15.67428 -15.27043 -15.17654 -14.90099 -14.53144 -14.39223 -14.12914 -13.82751 -13.76635 -13.43236 -13.39908 -13.31002 -13.26842 -12.98415 -12.85716 -12.72834 -12.54765 -12.35447 -12.24893 -12.15414 -12.03896 -11.96095 -11.77838 -11.70313 -11.42395 -11.13305 -11.02644 -10.88119 -10.79887 -10.68277 -8.29311 -6.43534 -1.01855 1.00300 1.39067 1.40396 1.42562 1.53767 2.35439 2.54719 2.98809 3.04242 3.22790 3.61203 3.73502 3.78407 3.98380 4.01816 4.09179 4.16118 4.20947 4.36111 4.45867 4.47341 4.59643 4.66312 4.77557 4.81367 4.95571 5.02743 5.06921 5.11928 5.17513 5.19753 5.20963 5.23869 5.27539 5.31839 5.41016 5.51307 5.55832 5.64471 5.68868 5.74519 6.01527 6.44300 6.69311 7.26560 8.83469 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021212 B = 0.003086 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.661348 B = 9070.434858 C = 9944.136586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 H 0.060 0.940 4 C -0.109 4.109 5 C -0.118 4.118 6 C -0.099 4.099 7 H 0.142 0.858 8 C 0.533 3.467 9 O -0.531 6.531 10 N -1.036 6.036 11 S 2.597 3.403 12 O -0.971 6.971 13 O -0.980 6.980 14 C -0.579 4.579 15 C 0.022 3.978 16 C -0.540 4.540 17 H 0.074 0.926 18 C -0.004 4.004 19 N -0.933 5.933 20 Si 0.976 3.024 21 H -0.257 1.257 22 H -0.274 1.274 23 H -0.279 1.279 24 C -0.102 4.102 25 C -0.081 4.081 26 H 0.071 0.929 27 C -0.155 4.155 28 H 0.066 0.934 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.057 0.943 34 H 0.089 0.911 35 H 0.450 0.550 36 H 0.133 0.867 37 H 0.152 0.848 38 H 0.016 0.984 39 H 0.004 0.996 40 H 0.269 0.731 41 H 0.062 0.938 42 H 0.053 0.947 43 H 0.070 0.930 44 H 0.050 0.950 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.875 2.269 -4.482 29.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 H 0.078 0.922 4 C -0.146 4.146 5 C -0.156 4.156 6 C -0.122 4.122 7 H 0.159 0.841 8 C 0.322 3.678 9 O -0.405 6.405 10 N -0.804 5.804 11 S 2.696 3.304 12 O -0.961 6.961 13 O -0.970 6.970 14 C -0.712 4.712 15 C -0.017 4.017 16 C -0.579 4.579 17 H 0.092 0.908 18 C -0.202 4.202 19 N -0.573 5.573 20 Si 0.800 3.200 21 H -0.180 1.180 22 H -0.199 1.199 23 H -0.204 1.204 24 C -0.140 4.140 25 C -0.099 4.099 26 H 0.090 0.910 27 C -0.212 4.212 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.076 0.924 34 H 0.108 0.892 35 H 0.290 0.710 36 H 0.151 0.849 37 H 0.170 0.830 38 H 0.034 0.966 39 H 0.022 0.978 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -27.754 3.145 -4.518 28.294 hybrid contribution 0.755 -0.601 0.796 1.251 sum -26.998 2.543 -3.722 27.372 Atomic orbital electron populations 1.21854 0.94237 1.02506 1.01707 1.21184 0.96236 0.99027 0.94561 0.92194 1.21618 0.92738 1.02365 0.97856 1.21663 0.97830 1.00631 0.95457 1.21650 0.86043 1.05194 0.99305 0.84077 1.21658 0.93269 0.73882 0.79040 1.90896 1.71289 1.42533 1.35749 1.54876 1.28275 1.64421 1.32779 1.05412 0.73265 0.75167 0.76520 1.93560 1.81510 1.77020 1.44032 1.93544 1.81672 1.34783 1.87048 1.30237 1.07306 1.15347 1.18269 1.18833 0.86956 0.97234 0.98641 1.21503 0.92807 1.32062 1.11521 0.90768 1.26135 0.96428 0.97277 1.00384 1.70103 1.00828 1.45766 1.40579 0.85228 0.78703 0.78028 0.78066 1.18017 1.19911 1.20426 1.21473 0.96328 1.00292 0.95943 1.21094 0.92747 0.97621 0.98445 0.91019 1.22038 1.01774 0.95083 1.02331 0.91497 0.92972 0.92426 0.90499 0.89599 0.92385 0.89205 0.70980 0.84890 0.82953 0.96613 0.97814 0.92263 0.91901 0.92783 0.91120 0.93073 0.91336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 8.84 71.98 0.64 -0.56 16 2 C -0.09 -0.96 2.49 -10.80 -0.03 -0.99 16 3 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 4 C -0.11 -0.93 4.93 30.59 0.15 -0.78 16 5 C -0.12 -1.45 5.10 30.59 0.16 -1.29 16 6 C -0.10 -1.56 2.25 -11.54 -0.03 -1.59 16 7 H 0.14 1.36 6.43 -2.39 -0.02 1.35 16 8 C 0.53 13.54 6.89 87.66 0.60 14.14 16 9 O -0.53 -18.75 14.08 13.34 0.19 -18.56 16 10 N -1.04 -24.74 5.50 -173.53 -0.95 -25.69 16 11 S 2.60 95.64 5.11 -56.49 -0.29 95.35 16 12 O -0.97 -38.33 18.08 -127.65 -2.31 -40.64 16 13 O -0.98 -44.77 17.04 -120.72 -2.06 -46.82 16 14 C -0.58 -23.38 5.82 71.98 0.42 -22.96 16 15 C 0.02 1.21 4.98 29.85 0.15 1.36 16 16 C -0.54 -30.82 9.11 25.60 0.23 -30.58 16 17 H 0.07 3.94 7.74 -2.91 -0.02 3.92 16 18 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 19 N -0.93 -57.60 13.29 21.45 0.28 -57.31 16 20 Si 0.98 44.09 29.54 68.60 2.03 46.12 16 21 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 23 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 24 C -0.10 -1.81 4.02 30.59 0.12 -1.68 16 25 C -0.08 -0.98 2.72 -10.80 -0.03 -1.01 16 26 H 0.07 0.91 8.14 -2.39 -0.02 0.90 16 27 C -0.16 -1.45 8.15 71.98 0.59 -0.87 16 28 H 0.07 0.45 6.43 -2.39 -0.02 0.43 16 29 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.06 0.43 8.14 -2.38 -0.02 0.41 16 31 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.09 0.50 6.43 -2.39 -0.02 0.49 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.09 0.77 7.58 -2.39 -0.02 0.75 16 35 H 0.45 6.35 8.22 -96.75 -0.80 5.56 16 36 H 0.13 5.32 7.19 -2.39 -0.02 5.31 16 37 H 0.15 5.06 8.14 -2.39 -0.02 5.04 16 38 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 40 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 41 H 0.06 1.26 8.10 -2.38 -0.02 1.24 16 42 H 0.05 1.16 8.10 -2.39 -0.02 1.14 16 43 H 0.07 0.51 4.81 -2.39 -0.01 0.50 16 44 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 45 H 0.07 0.52 6.43 -2.39 -0.02 0.50 16 Total: -1.00 -81.30 361.91 0.52 -80.78 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 0.19 Total: 13.36 kcal Atomic # 6 Polarization: -50.00 SS G_CDS: 3.44 Total: -46.56 kcal Atomic # 7 Polarization: -82.33 SS G_CDS: -0.67 Total: -83.00 kcal Atomic # 8 Polarization: -101.85 SS G_CDS: -4.18 Total: -106.03 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: 95.64 SS G_CDS: -0.29 Total: 95.35 kcal Total: -81.30 0.52 -80.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835273029.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.081 kcal (2) G-P(sol) polarization free energy of solvation -81.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds