Wall clock time and date at job start Tue Mar 31 2020 12:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46778 * 2 1 4 4 C 1.52999 * 109.47102 * 240.00097 * 2 1 3 5 5 C 1.52998 * 109.46774 * 179.97438 * 4 2 1 6 6 C 1.53004 * 109.47014 * 60.00866 * 5 4 2 7 7 H 1.08994 * 109.47223 * 59.99416 * 6 5 4 8 8 C 1.50699 * 109.47303 * 179.97438 * 6 5 4 9 9 O 1.21282 * 119.99923 * 119.99051 * 8 6 5 10 10 N 1.34777 * 120.00135 * 300.00010 * 8 6 5 11 11 S 1.65593 * 120.00221 * 179.97438 * 10 8 6 12 12 O 1.42106 * 104.27581 * 308.92371 * 11 10 8 13 13 O 1.42104 * 104.27905 * 181.06512 * 11 10 8 14 14 C 1.81399 * 104.45079 * 64.99583 * 11 10 8 15 15 C 1.52997 * 109.47147 * 179.97438 * 14 11 10 16 16 C 1.50706 * 109.47238 * 179.97438 * 15 14 11 17 17 H 1.07999 * 119.99515 * 0.02562 * 16 15 14 18 18 C 1.37870 * 120.00176 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99883 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00043 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47216 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47389 * 119.99848 * 20 18 16 23 23 H 1.48501 * 109.47057 * 239.99829 * 20 18 16 24 24 C 1.53007 * 109.46522 * 299.99423 * 6 5 4 25 25 C 1.52993 * 109.47283 * 60.00385 * 24 6 5 26 26 H 1.09003 * 109.47413 * 59.99259 * 25 24 6 27 27 C 1.52994 * 109.47314 * 179.97438 * 25 24 6 28 28 H 1.09007 * 109.46879 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47263 * 299.99443 * 1 2 3 30 30 H 1.09001 * 109.47205 * 60.00168 * 1 2 3 31 31 H 1.09000 * 109.47030 * 60.00265 * 4 2 1 32 32 H 1.08994 * 109.47476 * 300.00048 * 4 2 1 33 33 H 1.08994 * 109.47602 * 300.00514 * 5 4 2 34 34 H 1.09000 * 109.46756 * 179.97438 * 5 4 2 35 35 H 0.97006 * 119.99523 * 359.97438 * 10 8 6 36 36 H 1.09001 * 109.47190 * 60.00203 * 14 11 10 37 37 H 1.09004 * 109.47089 * 300.00070 * 14 11 10 38 38 H 1.09001 * 109.46832 * 60.00079 * 15 14 11 39 39 H 1.09000 * 109.47611 * 300.00376 * 15 14 11 40 40 H 0.97004 * 119.99507 * 180.02562 * 19 18 16 41 41 H 1.09000 * 109.46463 * 180.02562 * 24 6 5 42 42 H 1.08998 * 109.47114 * 300.00325 * 24 6 5 43 43 H 1.09003 * 109.47497 * 179.97438 * 27 25 24 44 44 H 1.09001 * 109.47328 * 300.00019 * 27 25 24 45 45 H 1.09007 * 109.47078 * 59.99819 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7206 -1.2495 6 6 4.0805 -1.4417 -0.0003 7 1 3.7175 -2.4694 -0.0002 8 6 5.5875 -1.4417 -0.0008 9 8 6.1942 -0.9163 0.9085 10 7 6.2611 -2.0254 -1.0118 11 16 7.9170 -2.0249 -1.0126 12 8 8.2671 -0.6642 -0.7997 13 8 8.2671 -2.6915 -2.2178 14 6 8.3708 -3.0317 0.4265 15 6 9.8950 -3.1084 0.5350 16 6 10.2720 -3.9444 1.7310 17 1 9.5015 -4.3778 2.3513 18 6 11.6004 -4.1557 2.0332 19 7 12.5387 -3.6274 1.2780 20 14 12.0677 -5.1924 3.5152 21 1 10.8360 -5.6674 4.1952 22 1 12.8694 -6.3603 3.0694 23 1 12.8693 -4.3732 4.4594 24 6 3.5704 -0.7205 1.2490 25 6 2.0405 -0.7210 1.2493 26 1 1.6774 -1.7488 1.2493 27 6 1.5304 -0.0004 2.4988 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6767 -0.2073 -2.1392 32 1 1.6767 -1.7488 -1.2493 33 1 3.9330 0.3071 -1.2496 34 1 3.9333 -1.2348 -2.1393 35 1 5.7757 -2.4459 -1.7389 36 1 7.9642 -4.0363 0.3099 37 1 7.9642 -2.5777 1.3302 38 1 10.3019 -2.1040 0.6514 39 1 10.3012 -3.5625 -0.3688 40 1 13.4734 -3.7764 1.4905 41 1 3.9345 -1.2339 2.1389 42 1 3.9334 0.3073 1.2488 43 1 0.4404 -0.0003 2.4988 44 1 1.8941 -0.5143 3.3886 45 1 1.8935 1.0275 2.4991 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835273030.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:47 Heat of formation + Delta-G solvation = -154.494695 kcal Electronic energy + Delta-G solvation = -25268.190794 eV Core-core repulsion = 21604.182538 eV Total energy + Delta-G solvation = -3664.008256 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.70290 -38.72111 -36.68531 -35.60590 -34.58683 -33.89406 -33.32993 -32.32554 -31.17833 -27.91086 -26.33767 -25.61243 -23.25149 -22.12155 -21.68186 -20.70303 -20.05666 -19.32916 -17.85418 -17.40268 -16.51081 -15.94530 -15.47111 -15.16319 -15.02675 -14.91907 -14.60859 -14.53810 -14.35560 -14.17352 -13.44089 -12.98736 -12.97658 -12.56512 -12.43793 -12.40200 -12.14116 -12.04658 -11.79852 -11.74738 -11.71187 -11.60514 -11.29693 -11.24126 -11.09225 -10.99357 -10.85323 -10.83048 -10.63049 -10.39215 -10.34654 -10.28977 -9.97510 -9.69672 -9.16526 -8.49965 -6.12009 -4.17365 0.51745 2.10718 2.75632 3.26517 3.33576 3.37413 3.96020 4.11838 4.25769 4.29863 4.37808 4.54629 4.64522 4.68598 4.70383 4.93976 4.96089 5.09660 5.11507 5.16372 5.23414 5.25658 5.34150 5.43878 5.45863 5.55202 5.60133 5.65421 5.69414 5.73085 5.73616 5.78939 5.86938 5.94720 6.04388 6.07870 6.23522 6.46221 6.65987 7.28826 7.35391 7.49882 7.81359 8.17065 8.85869 9.47243 10.99198 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020276 B = 0.003046 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.595251 B = 9188.697851 C =10169.558782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.091 4.091 3 H 0.072 0.928 4 C -0.111 4.111 5 C -0.116 4.116 6 C -0.107 4.107 7 H 0.107 0.893 8 C 0.536 3.464 9 O -0.487 6.487 10 N -1.059 6.059 11 S 2.565 3.435 12 O -0.939 6.939 13 O -0.956 6.956 14 C -0.576 4.576 15 C 0.029 3.971 16 C -0.518 4.518 17 H 0.063 0.937 18 C 0.057 3.943 19 N -0.890 5.890 20 Si 0.901 3.099 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.101 4.101 25 C -0.086 4.086 26 H 0.071 0.929 27 C -0.150 4.150 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.427 0.573 36 H 0.121 0.879 37 H 0.131 0.869 38 H 0.036 0.964 39 H 0.034 0.966 40 H 0.265 0.735 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.081 4.475 -4.011 26.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.109 4.109 3 H 0.090 0.910 4 C -0.149 4.149 5 C -0.154 4.154 6 C -0.130 4.130 7 H 0.124 0.876 8 C 0.322 3.678 9 O -0.358 6.358 10 N -0.820 5.820 11 S 2.665 3.335 12 O -0.929 6.929 13 O -0.946 6.946 14 C -0.710 4.710 15 C -0.010 4.010 16 C -0.558 4.558 17 H 0.081 0.919 18 C -0.145 4.145 19 N -0.529 5.529 20 Si 0.729 3.271 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.139 4.139 25 C -0.104 4.104 26 H 0.090 0.910 27 C -0.207 4.207 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.262 0.738 36 H 0.139 0.861 37 H 0.149 0.851 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.074 0.926 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -24.945 5.381 -4.023 25.834 hybrid contribution -0.037 -1.210 0.783 1.442 sum -24.982 4.171 -3.240 25.534 Atomic orbital electron populations 1.21887 0.95250 1.01781 1.01698 1.21224 0.95457 0.99888 0.94380 0.90970 1.21580 0.94260 1.01117 0.97921 1.21584 0.96488 1.01478 0.95807 1.21482 0.90072 1.02886 0.98578 0.87550 1.20705 0.91517 0.75394 0.80231 1.90905 1.70220 1.40571 1.34065 1.55436 1.30479 1.64521 1.31611 1.06709 0.72171 0.76726 0.77903 1.93595 1.79960 1.32536 1.86801 1.93587 1.80206 1.77111 1.43741 1.30337 1.11416 1.12676 1.16592 1.18995 0.82767 0.99504 0.99745 1.21017 0.92077 1.31836 1.10837 0.91916 1.25071 0.96452 0.95964 0.97036 1.69970 1.00364 1.44122 1.38411 0.86388 0.78584 0.79909 0.82260 1.19617 1.20793 1.20755 1.21505 0.94509 1.01747 0.96104 1.21167 0.94724 0.99828 0.94701 0.91043 1.21877 1.00899 1.00688 0.97210 0.92745 0.92335 0.92866 0.91419 0.91551 0.90839 0.91105 0.73765 0.86084 0.85088 0.94585 0.94765 0.92562 0.90638 0.90695 0.92394 0.92534 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 8.84 37.16 0.33 -0.47 16 2 C -0.09 -0.58 2.25 -90.62 -0.20 -0.78 16 3 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.11 -0.66 5.20 -26.73 -0.14 -0.80 16 5 C -0.12 -0.86 5.10 -26.73 -0.14 -0.99 16 6 C -0.11 -0.95 2.53 -91.77 -0.23 -1.18 16 7 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 8 C 0.54 7.08 6.89 -10.99 -0.08 7.00 16 9 O -0.49 -8.48 14.09 -11.57 -0.16 -8.65 16 10 N -1.06 -13.49 5.50 31.22 0.17 -13.32 16 11 S 2.56 47.17 5.11 -107.50 -0.55 46.62 16 12 O -0.94 -20.85 17.04 -64.79 -1.10 -21.95 16 13 O -0.96 -19.10 18.08 -57.54 -1.04 -20.14 16 14 C -0.58 -11.57 5.82 37.16 0.22 -11.36 16 15 C 0.03 0.76 4.98 -27.88 -0.14 0.62 16 16 C -0.52 -14.60 9.11 -34.44 -0.31 -14.92 16 17 H 0.06 1.68 7.74 -52.49 -0.41 1.28 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -26.78 13.29 55.43 0.74 -26.05 16 20 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 C -0.10 -0.93 3.77 -26.73 -0.10 -1.03 16 25 C -0.09 -0.60 2.25 -90.62 -0.20 -0.80 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 27 C -0.15 -1.01 8.84 37.15 0.33 -0.68 16 28 H 0.05 0.28 8.14 -51.92 -0.42 -0.14 16 29 H 0.06 0.31 6.43 -51.93 -0.33 -0.03 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.43 7.56 -51.93 -0.39 0.04 16 35 H 0.43 3.65 8.21 -34.47 -0.28 3.36 16 36 H 0.12 2.09 8.14 -51.92 -0.42 1.67 16 37 H 0.13 2.59 7.19 -51.92 -0.37 2.22 16 38 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 42 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 43 H 0.06 0.34 6.43 -51.93 -0.33 0.00 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.06 0.40 8.14 -51.92 -0.42 -0.03 16 LS Contribution 368.92 15.07 5.56 5.56 Total: -1.00 -36.33 368.92 -9.77 -46.10 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -7.60 Total: -0.81 kcal Atomic # 6 Polarization: -23.08 SS G_CDS: -0.77 Total: -23.85 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: 0.91 Total: -39.36 kcal Atomic # 8 Polarization: -48.43 SS G_CDS: -2.31 Total: -50.74 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: 47.17 SS G_CDS: -0.55 Total: 46.62 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.33 -9.77 -46.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835273030.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.395 kcal (2) G-P(sol) polarization free energy of solvation -36.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds