Wall clock time and date at job start Tue Mar 31 2020 12:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46778 * 2 1 4 4 C 1.52999 * 109.47102 * 240.00097 * 2 1 3 5 5 C 1.52998 * 109.46774 * 179.97438 * 4 2 1 6 6 C 1.53004 * 109.47014 * 60.00866 * 5 4 2 7 7 H 1.08994 * 109.47223 * 59.99416 * 6 5 4 8 8 C 1.50699 * 109.47303 * 179.97438 * 6 5 4 9 9 O 1.21282 * 119.99923 * 119.99051 * 8 6 5 10 10 N 1.34777 * 120.00135 * 300.00010 * 8 6 5 11 11 S 1.65593 * 120.00221 * 179.97438 * 10 8 6 12 12 O 1.42106 * 104.27581 * 308.92371 * 11 10 8 13 13 O 1.42104 * 104.27905 * 181.06512 * 11 10 8 14 14 C 1.81399 * 104.45079 * 64.99583 * 11 10 8 15 15 C 1.52997 * 109.47147 * 179.97438 * 14 11 10 16 16 C 1.50706 * 109.47238 * 179.97438 * 15 14 11 17 17 H 1.07999 * 119.99515 * 0.02562 * 16 15 14 18 18 C 1.37870 * 120.00176 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99883 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00043 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47216 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47389 * 119.99848 * 20 18 16 23 23 H 1.48501 * 109.47057 * 239.99829 * 20 18 16 24 24 C 1.53007 * 109.46522 * 299.99423 * 6 5 4 25 25 C 1.52993 * 109.47283 * 60.00385 * 24 6 5 26 26 H 1.09003 * 109.47413 * 59.99259 * 25 24 6 27 27 C 1.52994 * 109.47314 * 179.97438 * 25 24 6 28 28 H 1.09007 * 109.46879 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47263 * 299.99443 * 1 2 3 30 30 H 1.09001 * 109.47205 * 60.00168 * 1 2 3 31 31 H 1.09000 * 109.47030 * 60.00265 * 4 2 1 32 32 H 1.08994 * 109.47476 * 300.00048 * 4 2 1 33 33 H 1.08994 * 109.47602 * 300.00514 * 5 4 2 34 34 H 1.09000 * 109.46756 * 179.97438 * 5 4 2 35 35 H 0.97006 * 119.99523 * 359.97438 * 10 8 6 36 36 H 1.09001 * 109.47190 * 60.00203 * 14 11 10 37 37 H 1.09004 * 109.47089 * 300.00070 * 14 11 10 38 38 H 1.09001 * 109.46832 * 60.00079 * 15 14 11 39 39 H 1.09000 * 109.47611 * 300.00376 * 15 14 11 40 40 H 0.97004 * 119.99507 * 180.02562 * 19 18 16 41 41 H 1.09000 * 109.46463 * 180.02562 * 24 6 5 42 42 H 1.08998 * 109.47114 * 300.00325 * 24 6 5 43 43 H 1.09003 * 109.47497 * 179.97438 * 27 25 24 44 44 H 1.09001 * 109.47328 * 300.00019 * 27 25 24 45 45 H 1.09007 * 109.47078 * 59.99819 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7206 -1.2495 6 6 4.0805 -1.4417 -0.0003 7 1 3.7175 -2.4694 -0.0002 8 6 5.5875 -1.4417 -0.0008 9 8 6.1942 -0.9163 0.9085 10 7 6.2611 -2.0254 -1.0118 11 16 7.9170 -2.0249 -1.0126 12 8 8.2671 -0.6642 -0.7997 13 8 8.2671 -2.6915 -2.2178 14 6 8.3708 -3.0317 0.4265 15 6 9.8950 -3.1084 0.5350 16 6 10.2720 -3.9444 1.7310 17 1 9.5015 -4.3778 2.3513 18 6 11.6004 -4.1557 2.0332 19 7 12.5387 -3.6274 1.2780 20 14 12.0677 -5.1924 3.5152 21 1 10.8360 -5.6674 4.1952 22 1 12.8694 -6.3603 3.0694 23 1 12.8693 -4.3732 4.4594 24 6 3.5704 -0.7205 1.2490 25 6 2.0405 -0.7210 1.2493 26 1 1.6774 -1.7488 1.2493 27 6 1.5304 -0.0004 2.4988 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6767 -0.2073 -2.1392 32 1 1.6767 -1.7488 -1.2493 33 1 3.9330 0.3071 -1.2496 34 1 3.9333 -1.2348 -2.1393 35 1 5.7757 -2.4459 -1.7389 36 1 7.9642 -4.0363 0.3099 37 1 7.9642 -2.5777 1.3302 38 1 10.3019 -2.1040 0.6514 39 1 10.3012 -3.5625 -0.3688 40 1 13.4734 -3.7764 1.4905 41 1 3.9345 -1.2339 2.1389 42 1 3.9334 0.3073 1.2488 43 1 0.4404 -0.0003 2.4988 44 1 1.8941 -0.5143 3.3886 45 1 1.8935 1.0275 2.4991 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835273030.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:46 Heat of formation + Delta-G solvation = -179.986888 kcal Electronic energy + Delta-G solvation = -25269.296218 eV Core-core repulsion = 21604.182538 eV Total energy + Delta-G solvation = -3665.113680 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.68921 -39.48488 -38.29376 -37.24873 -35.99260 -35.72193 -34.01881 -33.20058 -32.88250 -28.47342 -27.68234 -26.97111 -24.16299 -23.59379 -22.67544 -21.59150 -20.79851 -20.55255 -19.35352 -18.70876 -18.28601 -17.36464 -16.70637 -16.57221 -16.48964 -16.05367 -15.54556 -15.35427 -15.24168 -15.03508 -14.79430 -14.51003 -13.89193 -13.80344 -13.62289 -13.54711 -13.39193 -13.28037 -12.98477 -12.95151 -12.85722 -12.64492 -12.60152 -12.35999 -12.35329 -12.23739 -12.03160 -11.86798 -11.83092 -11.74542 -11.53393 -11.25343 -11.08764 -10.84617 -10.82190 -10.68310 -8.29362 -6.43601 -1.01803 1.00327 1.39014 1.40422 1.42812 1.53786 2.35416 2.54777 2.98558 3.04210 3.22793 3.62836 3.72084 3.78838 3.98722 4.01855 4.07651 4.09344 4.21074 4.36214 4.49254 4.55737 4.63352 4.66283 4.76629 4.81833 4.92639 4.96563 5.02683 5.15070 5.17077 5.19686 5.20965 5.22247 5.25530 5.33379 5.37407 5.48678 5.59143 5.64416 5.68823 5.69802 6.01468 6.44515 6.69245 7.26535 8.83415 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020276 B = 0.003046 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.595251 B = 9188.697851 C =10169.558782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 H 0.059 0.941 4 C -0.106 4.106 5 C -0.118 4.118 6 C -0.098 4.098 7 H 0.143 0.857 8 C 0.533 3.467 9 O -0.532 6.532 10 N -1.036 6.036 11 S 2.597 3.403 12 O -0.981 6.981 13 O -0.971 6.971 14 C -0.578 4.578 15 C 0.022 3.978 16 C -0.540 4.540 17 H 0.074 0.926 18 C -0.004 4.004 19 N -0.933 5.933 20 Si 0.977 3.023 21 H -0.257 1.257 22 H -0.274 1.274 23 H -0.279 1.279 24 C -0.102 4.102 25 C -0.079 4.079 26 H 0.086 0.914 27 C -0.150 4.150 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.056 0.944 34 H 0.089 0.911 35 H 0.450 0.550 36 H 0.152 0.848 37 H 0.133 0.867 38 H 0.003 0.997 39 H 0.016 0.984 40 H 0.268 0.732 41 H 0.063 0.937 42 H 0.052 0.948 43 H 0.070 0.930 44 H 0.051 0.949 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.946 2.791 -4.017 29.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 H 0.077 0.923 4 C -0.144 4.144 5 C -0.156 4.156 6 C -0.120 4.120 7 H 0.161 0.839 8 C 0.322 3.678 9 O -0.405 6.405 10 N -0.803 5.803 11 S 2.696 3.304 12 O -0.971 6.971 13 O -0.961 6.961 14 C -0.711 4.711 15 C -0.017 4.017 16 C -0.579 4.579 17 H 0.092 0.908 18 C -0.202 4.202 19 N -0.573 5.573 20 Si 0.800 3.200 21 H -0.180 1.180 22 H -0.199 1.199 23 H -0.204 1.204 24 C -0.141 4.141 25 C -0.098 4.098 26 H 0.104 0.896 27 C -0.208 4.208 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.075 0.925 34 H 0.108 0.892 35 H 0.290 0.710 36 H 0.170 0.830 37 H 0.151 0.849 38 H 0.022 0.978 39 H 0.034 0.966 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.089 0.911 44 H 0.070 0.930 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -27.826 3.674 -4.054 28.359 hybrid contribution 0.785 -0.623 0.754 1.254 sum -27.041 3.052 -3.300 27.412 Atomic orbital electron populations 1.21857 0.94206 1.02345 1.01902 1.21222 0.96265 0.99202 0.94329 0.92278 1.21573 0.92703 1.02197 0.97883 1.21666 0.97839 1.00567 0.95526 1.21617 0.86064 1.05159 0.99194 0.83924 1.21658 0.93294 0.73855 0.79037 1.90898 1.71268 1.42469 1.35862 1.54875 1.28253 1.64569 1.32646 1.05413 0.73284 0.75173 0.76504 1.93545 1.81759 1.34726 1.87034 1.93560 1.81543 1.77146 1.43888 1.30236 1.07306 1.15357 1.18247 1.18833 0.86965 0.97245 0.98632 1.21503 0.92797 1.32016 1.11577 0.90768 1.26137 0.96459 0.97276 1.00363 1.70108 1.00903 1.45714 1.40558 0.85225 0.78698 0.78029 0.78058 1.18016 1.19900 1.20431 1.21515 0.96316 1.00334 0.95895 1.21139 0.92731 1.00782 0.95126 0.89559 1.21888 1.01710 1.00087 0.97076 0.91937 0.92433 0.92470 0.90487 0.89799 0.92493 0.89219 0.70961 0.82955 0.84885 0.97825 0.96610 0.92267 0.91872 0.92914 0.91071 0.93008 0.93502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 8.84 71.98 0.64 -0.54 16 2 C -0.09 -0.95 2.25 -10.79 -0.02 -0.98 16 3 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 4 C -0.11 -0.90 5.20 30.59 0.16 -0.74 16 5 C -0.12 -1.44 5.10 30.59 0.16 -1.28 16 6 C -0.10 -1.51 2.53 -11.54 -0.03 -1.53 16 7 H 0.14 1.25 8.14 -2.39 -0.02 1.23 16 8 C 0.53 13.47 6.89 87.66 0.60 14.07 16 9 O -0.53 -18.74 14.09 13.34 0.19 -18.55 16 10 N -1.04 -24.65 5.50 -173.53 -0.95 -25.60 16 11 S 2.60 95.61 5.11 -56.49 -0.29 95.32 16 12 O -0.98 -44.79 17.04 -120.72 -2.06 -46.85 16 13 O -0.97 -38.35 18.08 -127.65 -2.31 -40.66 16 14 C -0.58 -23.37 5.82 71.98 0.42 -22.95 16 15 C 0.02 1.20 4.98 29.85 0.15 1.35 16 16 C -0.54 -30.83 9.11 25.60 0.23 -30.59 16 17 H 0.07 3.94 7.74 -2.91 -0.02 3.92 16 18 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 19 N -0.93 -57.62 13.29 21.45 0.28 -57.34 16 20 Si 0.98 44.10 29.54 68.60 2.03 46.13 16 21 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 23 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 24 C -0.10 -1.80 3.77 30.59 0.12 -1.68 16 25 C -0.08 -0.95 2.25 -10.80 -0.02 -0.97 16 26 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 27 C -0.15 -1.87 8.84 71.98 0.64 -1.23 16 28 H 0.06 0.42 8.14 -2.38 -0.02 0.40 16 29 H 0.06 0.48 6.43 -2.39 -0.02 0.46 16 30 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.09 0.76 7.56 -2.39 -0.02 0.74 16 35 H 0.45 6.31 8.21 -96.74 -0.79 5.52 16 36 H 0.15 5.06 8.14 -2.39 -0.02 5.04 16 37 H 0.13 5.32 7.19 -2.39 -0.02 5.31 16 38 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 39 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 41 H 0.06 1.25 8.10 -2.39 -0.02 1.23 16 42 H 0.05 1.15 8.10 -2.39 -0.02 1.13 16 43 H 0.07 0.69 6.43 -2.39 -0.02 0.68 16 44 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 Total: -1.00 -81.47 368.92 0.56 -80.91 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 0.18 Total: 13.47 kcal Atomic # 6 Polarization: -50.32 SS G_CDS: 3.49 Total: -46.82 kcal Atomic # 7 Polarization: -82.27 SS G_CDS: -0.67 Total: -82.94 kcal Atomic # 8 Polarization: -101.88 SS G_CDS: -4.18 Total: -106.06 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 16 Polarization: 95.61 SS G_CDS: -0.29 Total: 95.32 kcal Total: -81.47 0.56 -80.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835273030.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.075 kcal (2) G-P(sol) polarization free energy of solvation -81.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds