Wall clock time and date at job start Tue Mar 31 2020 12:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46679 * 2 1 4 4 C 1.52995 * 109.46957 * 240.00400 * 2 1 3 5 5 C 1.53004 * 109.47102 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.46891 * 59.99861 * 5 4 2 7 7 H 1.08999 * 109.47321 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.47420 * 60.00108 * 6 5 4 9 9 O 1.21286 * 120.00328 * 239.99996 * 8 6 5 10 10 N 1.34785 * 120.00007 * 59.99687 * 8 6 5 11 11 S 1.65601 * 119.99825 * 180.02562 * 10 8 6 12 12 O 1.42096 * 104.27862 * 308.93356 * 11 10 8 13 13 O 1.42105 * 104.27565 * 181.07012 * 11 10 8 14 14 C 1.81399 * 104.44935 * 65.00370 * 11 10 8 15 15 C 1.53002 * 109.47165 * 179.97438 * 14 11 10 16 16 C 1.50706 * 109.46931 * 179.97438 * 15 14 11 17 17 H 1.07999 * 120.00193 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99398 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00338 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99424 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46845 * 180.02562 * 20 18 16 22 22 H 1.48503 * 109.47399 * 299.99813 * 20 18 16 23 23 H 1.48498 * 109.47295 * 60.00420 * 20 18 16 24 24 C 1.52995 * 109.47361 * 299.99980 * 6 5 4 25 25 C 1.52997 * 109.47491 * 119.99696 * 2 1 3 26 26 H 1.09001 * 109.46911 * 60.00445 * 25 2 1 27 27 C 1.52998 * 109.47384 * 300.00619 * 25 2 1 28 28 H 1.09001 * 109.46679 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47026 * 299.99605 * 1 2 3 30 30 H 1.08998 * 109.47646 * 60.00057 * 1 2 3 31 31 H 1.09001 * 109.47892 * 59.99799 * 4 2 1 32 32 H 1.09001 * 109.47099 * 299.99343 * 4 2 1 33 33 H 1.09001 * 109.47046 * 299.99913 * 5 4 2 34 34 H 1.08995 * 109.47285 * 179.97438 * 5 4 2 35 35 H 0.96997 * 119.99531 * 0.02562 * 10 8 6 36 36 H 1.09004 * 109.47568 * 59.99655 * 14 11 10 37 37 H 1.09004 * 109.47089 * 299.99644 * 14 11 10 38 38 H 1.09000 * 109.46986 * 60.00120 * 15 14 11 39 39 H 1.08992 * 109.46974 * 300.00184 * 15 14 11 40 40 H 0.97000 * 119.99706 * 359.97438 * 19 18 16 41 41 H 1.08994 * 109.47563 * 179.97438 * 24 6 5 42 42 H 1.09001 * 109.47099 * 300.00269 * 24 6 5 43 43 H 1.08999 * 109.47320 * 59.99365 * 27 25 2 44 44 H 1.08998 * 109.47104 * 180.02562 * 27 25 2 45 45 H 1.09001 * 109.46955 * 299.99799 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5700 -0.7206 -1.2496 6 6 4.0805 -1.4416 -0.0004 7 1 5.1705 -1.4416 -0.0008 8 6 3.5787 -2.8625 -0.0001 9 8 2.8818 -3.2594 0.9097 10 7 3.9044 -3.6925 -1.0110 11 16 3.3524 -5.2538 -1.0109 12 8 3.7023 -5.7491 0.2741 13 8 3.9057 -5.8211 -2.1905 14 6 1.5517 -5.0973 -1.1642 15 6 0.9179 -6.4898 -1.1764 16 6 -0.5782 -6.3597 -1.3031 17 1 -1.0315 -5.3817 -1.3687 18 6 -1.3680 -7.4894 -1.3352 19 7 -0.8159 -8.6803 -1.2547 20 14 -3.2223 -7.3281 -1.4929 21 1 -3.8376 -8.6797 -1.5035 22 1 -3.7516 -6.5529 -0.3421 23 1 -3.5522 -6.6237 -2.7579 24 6 3.5706 -0.7204 1.2489 25 6 2.0401 -0.7211 1.2492 26 1 1.6768 -1.7488 1.2492 27 6 1.5301 0.0000 2.4985 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.6767 -0.2074 -2.1393 32 1 1.6767 -1.7488 -1.2493 33 1 3.9330 0.3072 -1.2498 34 1 3.9333 -1.2348 -2.1394 35 1 4.4620 -3.3751 -1.7384 36 1 1.3095 -4.5801 -2.0926 37 1 1.1632 -4.5283 -0.3194 38 1 1.1600 -7.0073 -0.2481 39 1 1.3064 -7.0583 -2.0213 40 1 0.1470 -8.7639 -1.1732 41 1 3.9338 -1.2342 2.1388 42 1 3.9335 0.3074 1.2487 43 1 0.4401 0.0000 2.4985 44 1 1.8939 -0.5135 3.3884 45 1 1.8933 1.0277 2.4985 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835273031.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:51 Heat of formation + Delta-G solvation = -152.036031 kcal Electronic energy + Delta-G solvation = -26401.414392 eV Core-core repulsion = 22737.512751 eV Total energy + Delta-G solvation = -3663.901640 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.06988 -38.21530 -36.78088 -35.71785 -34.74803 -34.26140 -33.23179 -32.14560 -31.05907 -27.71135 -26.08321 -25.10241 -23.60173 -22.04945 -21.97679 -20.64862 -20.07625 -19.39262 -17.81943 -17.18114 -16.74691 -16.27271 -15.64180 -15.29482 -14.96997 -14.81215 -14.63489 -14.21655 -14.04105 -13.78055 -13.59651 -13.02639 -12.89829 -12.63632 -12.30579 -12.28417 -12.12186 -11.98151 -11.94421 -11.84108 -11.82961 -11.72264 -11.59399 -11.16932 -11.04328 -10.96684 -10.63412 -10.53914 -10.46989 -10.28546 -10.18608 -10.15159 -10.05383 -9.75479 -8.69933 -8.45667 -6.47355 -4.19986 0.40977 2.07148 2.65416 3.39299 3.41661 3.60494 3.90055 4.08940 4.31615 4.42268 4.47303 4.50614 4.65060 4.76802 4.80415 4.94369 5.07188 5.14972 5.23315 5.27595 5.28281 5.45173 5.48209 5.55956 5.56761 5.57603 5.63742 5.69008 5.71781 5.79599 5.86034 5.96131 5.98313 6.11778 6.22194 6.28967 6.30429 6.49391 6.62188 6.94445 7.05298 7.48021 7.95239 8.29906 8.72569 9.51979 10.92555 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012543 B = 0.004739 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.734598 B = 5907.080543 C = 7309.162836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.085 4.085 3 H 0.067 0.933 4 C -0.126 4.126 5 C -0.112 4.112 6 C -0.109 4.109 7 H 0.105 0.895 8 C 0.538 3.462 9 O -0.483 6.483 10 N -1.059 6.059 11 S 2.564 3.436 12 O -0.939 6.939 13 O -0.956 6.956 14 C -0.569 4.569 15 C 0.017 3.983 16 C -0.598 4.598 17 H 0.056 0.944 18 C 0.017 3.983 19 N -0.905 5.905 20 Si 1.073 2.927 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.286 1.286 24 C -0.096 4.096 25 C -0.106 4.106 26 H 0.100 0.900 27 C -0.145 4.145 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.428 0.572 36 H 0.122 0.878 37 H 0.132 0.868 38 H 0.026 0.974 39 H 0.024 0.976 40 H 0.270 0.730 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.057 0.943 44 H 0.054 0.946 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.449 21.761 0.725 23.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.103 4.103 3 H 0.086 0.914 4 C -0.163 4.163 5 C -0.150 4.150 6 C -0.132 4.132 7 H 0.123 0.877 8 C 0.324 3.676 9 O -0.354 6.354 10 N -0.820 5.820 11 S 2.664 3.336 12 O -0.929 6.929 13 O -0.947 6.947 14 C -0.703 4.703 15 C -0.022 4.022 16 C -0.637 4.637 17 H 0.074 0.926 18 C -0.188 4.188 19 N -0.540 5.540 20 Si 0.900 3.100 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.213 1.213 24 C -0.134 4.134 25 C -0.125 4.125 26 H 0.118 0.882 27 C -0.202 4.202 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.263 0.737 36 H 0.140 0.860 37 H 0.151 0.849 38 H 0.044 0.956 39 H 0.042 0.958 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 8.144 19.849 1.411 21.501 hybrid contribution 1.378 1.474 -0.465 2.070 sum 9.522 21.323 0.946 23.371 Atomic orbital electron populations 1.21906 0.95124 1.02437 1.01468 1.21155 0.95772 0.99059 0.94312 0.91422 1.21729 0.94597 1.01563 0.98451 1.21579 0.96630 1.01180 0.95608 1.21507 1.02084 0.90790 0.98849 0.87694 1.20686 0.78630 0.88334 0.79907 1.90841 1.34612 1.76434 1.33515 1.55409 1.60950 1.33873 1.31814 1.06714 0.79797 0.72500 0.74595 1.93599 1.82443 1.76145 1.40690 1.93591 1.77695 1.73999 1.49391 1.30218 1.18550 1.10696 1.10845 1.19086 0.98656 0.86751 0.97721 1.21803 0.89926 0.95484 1.56515 0.92614 1.25967 1.07072 0.92211 0.93528 1.70783 1.13905 1.24091 1.45227 0.83488 0.73859 0.76042 0.76586 1.20518 1.21242 1.21279 1.21452 0.96279 0.99725 0.95896 1.21500 0.94527 1.02217 0.94214 0.88175 1.21827 1.01223 0.99645 0.97487 0.92251 0.92352 0.92933 0.91171 0.91780 0.90148 0.91177 0.73727 0.85981 0.84945 0.95552 0.95752 0.91952 0.90926 0.91066 0.92375 0.92720 0.93283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 8.84 37.16 0.33 -1.16 16 2 C -0.08 -0.77 2.25 -90.62 -0.20 -0.98 16 3 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 4 C -0.13 -1.13 4.98 -26.73 -0.13 -1.27 16 5 C -0.11 -0.79 5.36 -26.73 -0.14 -0.94 16 6 C -0.11 -0.95 3.01 -91.78 -0.28 -1.23 16 7 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 8 C 0.54 7.00 5.38 -10.98 -0.06 6.94 16 9 O -0.48 -8.11 11.76 -11.59 -0.14 -8.25 16 10 N -1.06 -13.39 5.50 31.22 0.17 -13.22 16 11 S 2.56 46.76 5.11 -107.50 -0.55 46.21 16 12 O -0.94 -20.62 17.04 -64.79 -1.10 -21.72 16 13 O -0.96 -18.98 18.08 -57.54 -1.04 -20.02 16 14 C -0.57 -11.39 5.82 37.16 0.22 -11.18 16 15 C 0.02 0.44 4.29 -27.88 -0.12 0.32 16 16 C -0.60 -16.92 9.11 -34.44 -0.31 -17.23 16 17 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 18 C 0.02 0.49 5.46 -17.82 -0.10 0.40 16 19 N -0.90 -27.84 13.65 55.43 0.76 -27.08 16 20 Si 1.07 25.05 29.90 -169.99 -5.08 19.97 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 24 C -0.10 -0.87 4.37 -26.71 -0.12 -0.99 16 25 C -0.11 -1.12 1.95 -90.60 -0.18 -1.30 16 26 H 0.10 1.38 5.51 -51.93 -0.29 1.09 16 27 C -0.14 -1.37 8.84 37.16 0.33 -1.04 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.53 6.43 -51.93 -0.33 0.19 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.70 7.22 -51.93 -0.37 0.33 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.40 7.56 -51.93 -0.39 0.01 16 35 H 0.43 3.64 8.21 -34.48 -0.28 3.36 16 36 H 0.12 2.13 8.14 -51.92 -0.42 1.71 16 37 H 0.13 2.62 7.19 -51.92 -0.37 2.25 16 38 H 0.03 0.72 8.01 -51.93 -0.42 0.30 16 39 H 0.02 0.64 8.01 -51.93 -0.42 0.23 16 40 H 0.27 8.30 7.22 -40.82 -0.29 8.00 16 41 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.55 6.43 -51.93 -0.33 0.22 16 44 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 361.08 15.07 5.44 5.44 Total: -1.00 -36.60 361.08 -9.66 -46.26 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -7.35 Total: 2.07 kcal Atomic # 6 Polarization: -28.89 SS G_CDS: -0.77 Total: -29.65 kcal Atomic # 7 Polarization: -41.23 SS G_CDS: 0.93 Total: -40.30 kcal Atomic # 8 Polarization: -47.71 SS G_CDS: -2.28 Total: -49.99 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -5.08 Total: 19.97 kcal Atomic # 16 Polarization: 46.76 SS G_CDS: -0.55 Total: 46.21 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.60 -9.66 -46.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835273031.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.774 kcal (2) G-P(sol) polarization free energy of solvation -36.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds