Wall clock time and date at job start Tue Mar 31 2020 12:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46679 * 2 1 4 4 C 1.52995 * 109.46957 * 240.00400 * 2 1 3 5 5 C 1.53004 * 109.47102 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.46891 * 59.99861 * 5 4 2 7 7 H 1.08999 * 109.47321 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.47420 * 60.00108 * 6 5 4 9 9 O 1.21286 * 120.00328 * 239.99996 * 8 6 5 10 10 N 1.34785 * 120.00007 * 59.99687 * 8 6 5 11 11 S 1.65601 * 119.99825 * 180.02562 * 10 8 6 12 12 O 1.42096 * 104.27862 * 308.93356 * 11 10 8 13 13 O 1.42105 * 104.27565 * 181.07012 * 11 10 8 14 14 C 1.81399 * 104.44935 * 65.00370 * 11 10 8 15 15 C 1.53002 * 109.47165 * 179.97438 * 14 11 10 16 16 C 1.50706 * 109.46931 * 179.97438 * 15 14 11 17 17 H 1.07999 * 120.00193 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99398 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00338 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99424 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46845 * 180.02562 * 20 18 16 22 22 H 1.48503 * 109.47399 * 299.99813 * 20 18 16 23 23 H 1.48498 * 109.47295 * 60.00420 * 20 18 16 24 24 C 1.52995 * 109.47361 * 299.99980 * 6 5 4 25 25 C 1.52997 * 109.47491 * 119.99696 * 2 1 3 26 26 H 1.09001 * 109.46911 * 60.00445 * 25 2 1 27 27 C 1.52998 * 109.47384 * 300.00619 * 25 2 1 28 28 H 1.09001 * 109.46679 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47026 * 299.99605 * 1 2 3 30 30 H 1.08998 * 109.47646 * 60.00057 * 1 2 3 31 31 H 1.09001 * 109.47892 * 59.99799 * 4 2 1 32 32 H 1.09001 * 109.47099 * 299.99343 * 4 2 1 33 33 H 1.09001 * 109.47046 * 299.99913 * 5 4 2 34 34 H 1.08995 * 109.47285 * 179.97438 * 5 4 2 35 35 H 0.96997 * 119.99531 * 0.02562 * 10 8 6 36 36 H 1.09004 * 109.47568 * 59.99655 * 14 11 10 37 37 H 1.09004 * 109.47089 * 299.99644 * 14 11 10 38 38 H 1.09000 * 109.46986 * 60.00120 * 15 14 11 39 39 H 1.08992 * 109.46974 * 300.00184 * 15 14 11 40 40 H 0.97000 * 119.99706 * 359.97438 * 19 18 16 41 41 H 1.08994 * 109.47563 * 179.97438 * 24 6 5 42 42 H 1.09001 * 109.47099 * 300.00269 * 24 6 5 43 43 H 1.08999 * 109.47320 * 59.99365 * 27 25 2 44 44 H 1.08998 * 109.47104 * 180.02562 * 27 25 2 45 45 H 1.09001 * 109.46955 * 299.99799 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5700 -0.7206 -1.2496 6 6 4.0805 -1.4416 -0.0004 7 1 5.1705 -1.4416 -0.0008 8 6 3.5787 -2.8625 -0.0001 9 8 2.8818 -3.2594 0.9097 10 7 3.9044 -3.6925 -1.0110 11 16 3.3524 -5.2538 -1.0109 12 8 3.7023 -5.7491 0.2741 13 8 3.9057 -5.8211 -2.1905 14 6 1.5517 -5.0973 -1.1642 15 6 0.9179 -6.4898 -1.1764 16 6 -0.5782 -6.3597 -1.3031 17 1 -1.0315 -5.3817 -1.3687 18 6 -1.3680 -7.4894 -1.3352 19 7 -0.8159 -8.6803 -1.2547 20 14 -3.2223 -7.3281 -1.4929 21 1 -3.8376 -8.6797 -1.5035 22 1 -3.7516 -6.5529 -0.3421 23 1 -3.5522 -6.6237 -2.7579 24 6 3.5706 -0.7204 1.2489 25 6 2.0401 -0.7211 1.2492 26 1 1.6768 -1.7488 1.2492 27 6 1.5301 0.0000 2.4985 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.6767 -0.2074 -2.1393 32 1 1.6767 -1.7488 -1.2493 33 1 3.9330 0.3072 -1.2498 34 1 3.9333 -1.2348 -2.1394 35 1 4.4620 -3.3751 -1.7384 36 1 1.3095 -4.5801 -2.0926 37 1 1.1632 -4.5283 -0.3194 38 1 1.1600 -7.0073 -0.2481 39 1 1.3064 -7.0583 -2.0213 40 1 0.1470 -8.7639 -1.1732 41 1 3.9338 -1.2342 2.1388 42 1 3.9335 0.3074 1.2487 43 1 0.4401 0.0000 2.4985 44 1 1.8939 -0.5135 3.3884 45 1 1.8933 1.0277 2.4985 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835273031.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:50 Heat of formation + Delta-G solvation = -178.300528 kcal Electronic energy + Delta-G solvation = -26402.553306 eV Core-core repulsion = 22737.512751 eV Total energy + Delta-G solvation = -3665.040554 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.01907 -39.12646 -38.35937 -37.35495 -36.39478 -35.85167 -34.00338 -33.09655 -32.84186 -28.44274 -27.21897 -26.81110 -24.59166 -23.95890 -22.73998 -21.50918 -21.01205 -20.68643 -19.50085 -18.65954 -18.19095 -17.68966 -16.81782 -16.70485 -15.96899 -15.69175 -15.59334 -15.53976 -15.34102 -15.01716 -14.98302 -14.80352 -14.12787 -13.92815 -13.75851 -13.50378 -13.38629 -13.08879 -13.03778 -12.92431 -12.69882 -12.66441 -12.57338 -12.55265 -12.40119 -12.32489 -12.30020 -11.97095 -11.87320 -11.70281 -11.50403 -10.87482 -10.85149 -10.81755 -10.68999 -10.66136 -8.80003 -6.53831 -1.11865 1.02343 1.33788 1.49758 1.58641 1.78221 2.41272 2.52733 2.93123 3.04937 3.20130 3.63875 3.71452 3.76832 3.84996 3.90999 3.94534 4.11794 4.21360 4.39830 4.43013 4.47142 4.60966 4.65868 4.73506 4.82034 4.90637 4.91097 4.93774 4.94635 4.99489 5.09473 5.15637 5.18664 5.23871 5.29919 5.38797 5.50939 5.53515 5.65316 5.74211 5.75673 6.01868 6.39280 6.48400 7.28530 8.59923 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012543 B = 0.004739 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.734598 B = 5907.080543 C = 7309.162836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.080 4.080 3 H 0.093 0.907 4 C -0.133 4.133 5 C -0.109 4.109 6 C -0.101 4.101 7 H 0.142 0.858 8 C 0.531 3.469 9 O -0.524 6.524 10 N -1.037 6.037 11 S 2.599 3.401 12 O -0.979 6.979 13 O -0.971 6.971 14 C -0.573 4.573 15 C 0.008 3.992 16 C -0.614 4.614 17 H 0.064 0.936 18 C -0.038 4.038 19 N -0.932 5.932 20 Si 1.121 2.879 21 H -0.281 1.281 22 H -0.269 1.269 23 H -0.261 1.261 24 C -0.096 4.096 25 C -0.112 4.112 26 H 0.059 0.941 27 C -0.143 4.143 28 H 0.029 0.971 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.034 0.966 33 H 0.113 0.887 34 H 0.089 0.911 35 H 0.450 0.550 36 H 0.148 0.852 37 H 0.130 0.870 38 H 0.000 1.000 39 H 0.012 0.988 40 H 0.255 0.745 41 H 0.056 0.944 42 H 0.105 0.895 43 H 0.050 0.950 44 H 0.042 0.958 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.340 25.471 -0.475 27.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.099 4.099 3 H 0.111 0.889 4 C -0.171 4.171 5 C -0.146 4.146 6 C -0.124 4.124 7 H 0.160 0.840 8 C 0.320 3.680 9 O -0.397 6.397 10 N -0.805 5.805 11 S 2.698 3.302 12 O -0.969 6.969 13 O -0.962 6.962 14 C -0.705 4.705 15 C -0.031 4.031 16 C -0.653 4.653 17 H 0.082 0.918 18 C -0.236 4.236 19 N -0.569 5.569 20 Si 0.941 3.059 21 H -0.207 1.207 22 H -0.194 1.194 23 H -0.186 1.186 24 C -0.134 4.134 25 C -0.130 4.130 26 H 0.077 0.923 27 C -0.200 4.200 28 H 0.048 0.952 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.053 0.947 33 H 0.131 0.869 34 H 0.107 0.893 35 H 0.290 0.710 36 H 0.166 0.834 37 H 0.148 0.852 38 H 0.018 0.982 39 H 0.030 0.970 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.124 0.876 43 H 0.069 0.931 44 H 0.062 0.938 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.053 23.571 0.179 25.251 hybrid contribution 1.145 0.395 -0.051 1.212 sum 10.198 23.967 0.128 26.046 Atomic orbital electron populations 1.21923 0.96224 1.00694 1.02218 1.21151 0.94886 1.00140 0.93675 0.88867 1.21806 0.96479 0.99949 0.98849 1.21678 0.94780 1.03055 0.95118 1.21700 1.04030 0.86921 0.99744 0.84037 1.21779 0.77629 0.89901 0.78733 1.90853 1.36495 1.77196 1.35182 1.54877 1.60860 1.31778 1.32971 1.05335 0.78210 0.73456 0.73242 1.93548 1.82496 1.78104 1.42720 1.93563 1.77300 1.75538 1.49763 1.30139 1.20955 1.07230 1.12197 1.18974 0.98467 0.89868 0.95777 1.22261 0.91412 0.95931 1.55652 0.91794 1.27647 1.11870 0.91708 0.92399 1.70922 1.13015 1.25320 1.47635 0.82908 0.68281 0.76457 0.78288 1.20658 1.19392 1.18571 1.21498 0.94948 1.01450 0.95478 1.21471 0.95942 1.00199 0.95401 0.92279 1.21808 1.00784 1.00680 0.96719 0.95212 0.91934 0.91850 0.89800 0.94722 0.86851 0.89277 0.70977 0.83409 0.85158 0.98204 0.96988 0.93589 0.92565 0.87639 0.93133 0.93846 0.91008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 8.84 71.98 0.64 -2.24 16 2 C -0.08 -1.28 2.25 -10.80 -0.02 -1.31 16 3 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 4 C -0.13 -2.04 4.98 30.59 0.15 -1.89 16 5 C -0.11 -1.02 5.36 30.60 0.16 -0.86 16 6 C -0.10 -1.40 3.01 -11.54 -0.03 -1.44 16 7 H 0.14 1.04 8.14 -2.39 -0.02 1.02 16 8 C 0.53 13.13 5.38 87.65 0.47 13.60 16 9 O -0.52 -18.02 11.76 13.34 0.16 -17.86 16 10 N -1.04 -24.63 5.50 -173.52 -0.95 -25.59 16 11 S 2.60 95.83 5.11 -56.49 -0.29 95.54 16 12 O -0.98 -44.37 17.04 -120.71 -2.06 -46.42 16 13 O -0.97 -38.35 18.08 -127.65 -2.31 -40.66 16 14 C -0.57 -23.61 5.82 71.98 0.42 -23.20 16 15 C 0.01 0.43 4.29 29.85 0.13 0.56 16 16 C -0.61 -35.63 9.11 25.60 0.23 -35.39 16 17 H 0.06 3.51 7.74 -2.91 -0.02 3.49 16 18 C -0.04 -2.27 5.46 84.66 0.46 -1.80 16 19 N -0.93 -59.34 13.65 21.45 0.29 -59.05 16 20 Si 1.12 50.38 29.90 68.60 2.05 52.43 16 21 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 22 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 23 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 24 C -0.10 -1.48 4.37 30.61 0.13 -1.35 16 25 C -0.11 -2.24 1.95 -10.78 -0.02 -2.26 16 26 H 0.06 1.70 5.51 -2.39 -0.01 1.69 16 27 C -0.14 -2.59 8.84 71.98 0.64 -1.95 16 28 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.06 1.08 6.43 -2.39 -0.02 1.07 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.03 0.73 7.22 -2.39 -0.02 0.71 16 33 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.09 0.54 7.56 -2.39 -0.02 0.52 16 35 H 0.45 6.29 8.21 -96.74 -0.79 5.50 16 36 H 0.15 5.17 8.14 -2.39 -0.02 5.15 16 37 H 0.13 5.42 7.19 -2.39 -0.02 5.40 16 38 H 0.00 -0.02 8.01 -2.39 -0.02 -0.04 16 39 H 0.01 0.67 8.01 -2.39 -0.02 0.65 16 40 H 0.25 16.51 7.22 -92.71 -0.67 15.84 16 41 H 0.06 1.06 8.10 -2.39 -0.02 1.04 16 42 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.05 0.96 6.43 -2.39 -0.02 0.95 16 44 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -84.13 361.08 0.54 -83.59 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 0.29 Total: 17.54 kcal Atomic # 6 Polarization: -62.87 SS G_CDS: 3.36 Total: -59.51 kcal Atomic # 7 Polarization: -83.97 SS G_CDS: -0.66 Total: -84.63 kcal Atomic # 8 Polarization: -100.74 SS G_CDS: -4.21 Total: -104.95 kcal Atomic # 14 Polarization: 50.38 SS G_CDS: 2.05 Total: 52.43 kcal Atomic # 16 Polarization: 95.83 SS G_CDS: -0.29 Total: 95.54 kcal Total: -84.13 0.54 -83.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835273031.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.712 kcal (2) G-P(sol) polarization free energy of solvation -84.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds