Wall clock time and date at job start Tue Mar 31 2020 11:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46497 * 109.47188 * 239.99790 * 2 1 3 5 5 N 1.39839 * 125.38626 * 59.69847 * 4 2 1 6 6 C 1.30238 * 110.09130 * 179.84089 * 5 4 2 7 7 C 1.45854 * 107.65783 * 0.40743 * 6 5 4 8 8 C 1.39990 * 134.25898 * 179.69411 * 7 6 5 9 9 C 1.37026 * 118.15771 * 180.02562 * 8 7 6 10 10 C 1.50692 * 120.17761 * 179.97438 * 9 8 7 11 11 O 1.45199 * 109.47413 * 270.02113 * 10 9 8 12 12 C 1.34227 * 116.99895 * 180.02562 * 11 10 9 13 13 O 1.20830 * 120.00596 * 0.02562 * 12 11 10 14 14 C 1.50709 * 119.99944 * 179.97438 * 12 11 10 15 15 C 1.52997 * 109.46989 * 179.97438 * 14 12 11 16 16 C 1.50706 * 109.46668 * 179.97438 * 15 14 12 17 17 H 1.07995 * 120.00201 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99937 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00320 * 180.02562 * 18 16 15 20 20 Si 1.86808 * 119.99966 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47240 * 89.99430 * 20 18 16 22 22 H 1.48493 * 109.47095 * 209.99727 * 20 18 16 23 23 H 1.48506 * 109.46836 * 329.99700 * 20 18 16 24 24 C 1.38810 * 119.64297 * 359.97438 * 9 8 7 25 25 N 1.31506 * 121.58863 * 0.02562 * 24 9 8 26 26 C 1.32765 * 121.47108 * 359.97438 * 25 24 9 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 32 32 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 34 34 H 1.08009 * 126.16984 * 180.15437 * 6 5 4 35 35 H 1.08006 * 120.92545 * 0.02562 * 8 7 6 36 36 H 1.09000 * 109.47232 * 30.02310 * 10 9 8 37 37 H 1.09001 * 109.46930 * 150.02016 * 10 9 8 38 38 H 1.09001 * 109.46836 * 300.00261 * 14 12 11 39 39 H 1.08998 * 109.46821 * 59.99839 * 14 12 11 40 40 H 1.08995 * 109.47195 * 299.99995 * 15 14 12 41 41 H 1.08998 * 109.46904 * 60.00350 * 15 14 12 42 42 H 0.97002 * 120.00135 * 180.02562 * 19 18 16 43 43 H 1.07995 * 119.20476 * 179.97438 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 -1.1961 5 7 1.7459 -0.3159 -2.5155 6 6 2.3309 -1.1341 -3.3429 7 6 3.0381 -2.1338 -2.5506 8 6 3.8253 -3.2488 -2.8616 9 6 4.3444 -3.9827 -1.8274 10 6 5.1977 -5.1922 -2.1103 11 8 4.3532 -6.3699 -2.2003 12 6 4.9631 -7.5394 -2.4494 13 8 6.1629 -7.5779 -2.5873 14 6 4.1515 -8.8048 -2.5561 15 6 5.0820 -9.9848 -2.8431 16 6 4.2704 -11.2502 -2.9491 17 1 3.1982 -11.2161 -2.8247 18 6 4.8967 -12.4514 -3.2059 19 7 4.1885 -13.5556 -3.2990 20 14 6.7514 -12.5104 -3.4218 21 1 7.3961 -12.7400 -2.1039 22 1 7.1071 -13.6166 -4.3464 23 1 7.2251 -11.2213 -3.9867 24 6 4.0802 -3.6060 -0.5178 25 7 3.3389 -2.5560 -0.2393 26 6 2.8093 -1.8072 -1.1992 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.6768 1.9562 0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 2.2950 -1.0840 -4.4212 35 1 4.0182 -3.5231 -3.8883 36 1 5.7265 -5.0514 -3.0529 37 1 5.9200 -5.3237 -1.3046 38 1 3.6232 -8.9777 -1.6185 39 1 3.4297 -8.7062 -3.3669 40 1 5.6099 -9.8116 -3.7808 41 1 5.8041 -10.0835 -2.0325 42 1 4.6292 -14.4007 -3.4793 43 1 4.4925 -4.1897 0.2918 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837738271.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:25 Heat of formation + Delta-G solvation = 2.868962 kcal Electronic energy + Delta-G solvation = -24914.974771 eV Core-core repulsion = 21154.639115 eV Total energy + Delta-G solvation = -3760.335656 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.93833 -40.14436 -38.73105 -36.33335 -35.92560 -33.64753 -33.44905 -31.47361 -30.85199 -30.43057 -27.73588 -27.16872 -25.78875 -24.39105 -23.40418 -22.30513 -21.60182 -20.15831 -19.83058 -18.22858 -17.57465 -17.30244 -16.79647 -16.40294 -16.00365 -15.89283 -15.50301 -14.98907 -14.68307 -14.15838 -14.08360 -13.81962 -13.68899 -13.54102 -13.05579 -12.93675 -12.71632 -12.64414 -12.58024 -12.38720 -12.22996 -11.86046 -11.80022 -11.46099 -11.13515 -11.03664 -10.80858 -10.57713 -10.33745 -10.17976 -9.97324 -9.80605 -9.70506 -9.31641 -9.26844 -8.58499 -8.56625 -6.07963 -4.07970 0.45622 0.83255 1.75703 2.11158 2.65892 2.95111 3.33569 3.40656 3.49282 3.57231 3.78120 3.87455 4.24141 4.34159 4.45294 4.47910 4.48213 4.58837 4.66028 4.86713 4.89284 5.08209 5.09820 5.18120 5.24835 5.26717 5.27755 5.33834 5.41262 5.52051 5.64237 5.69097 5.87495 5.94546 5.98542 6.01006 6.17044 6.45561 6.50275 6.75093 7.09931 7.22521 7.29840 7.56649 7.69806 8.17599 8.46053 8.94489 9.53688 11.04574 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.031779 B = 0.002032 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.881031 B =13777.845745 C =13948.460808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.163 3.837 3 C -0.160 4.160 4 N -0.386 5.386 5 N -0.237 5.237 6 C 0.086 3.914 7 C -0.233 4.233 8 C 0.033 3.967 9 C -0.186 4.186 10 C 0.116 3.884 11 O -0.360 6.360 12 C 0.458 3.542 13 O -0.511 6.511 14 C -0.096 4.096 15 C -0.002 4.002 16 C -0.527 4.527 17 H 0.075 0.925 18 C 0.070 3.930 19 N -0.900 5.900 20 Si 0.877 3.123 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.262 1.262 24 C 0.196 3.804 25 N -0.505 5.505 26 C 0.318 3.682 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.107 0.893 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.202 0.798 35 H 0.144 0.856 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.026 0.974 41 H 0.021 0.979 42 H 0.264 0.736 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.113 30.746 4.552 31.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.062 3.938 3 C -0.218 4.218 4 N -0.178 5.178 5 N -0.049 5.049 6 C -0.112 4.112 7 C -0.243 4.243 8 C 0.005 3.995 9 C -0.191 4.191 10 C 0.041 3.959 11 O -0.278 6.278 12 C 0.303 3.697 13 O -0.398 6.398 14 C -0.133 4.133 15 C -0.040 4.040 16 C -0.565 4.565 17 H 0.093 0.907 18 C -0.131 4.131 19 N -0.538 5.538 20 Si 0.704 3.296 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.186 1.186 24 C 0.026 3.974 25 N -0.219 5.219 26 C 0.079 3.921 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.125 0.875 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.218 0.782 35 H 0.162 0.838 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.044 0.956 41 H 0.040 0.960 42 H 0.074 0.926 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -4.764 32.037 5.607 32.871 hybrid contribution 1.696 -1.059 -1.010 2.240 sum -3.068 30.977 4.597 31.466 Atomic orbital electron populations 1.22152 0.93424 1.03024 1.03330 1.21326 0.95308 0.93593 0.83586 1.22144 1.01740 0.94616 1.03339 1.48509 1.42671 1.21990 1.04600 1.76651 1.19531 1.21720 0.87004 1.25067 0.94935 0.91307 0.99925 1.20496 1.08264 1.01585 0.93947 1.20733 0.89138 0.89607 1.00061 1.20031 1.05535 0.99004 0.94498 1.21495 0.90792 0.80507 1.03085 1.86648 1.42222 1.16300 1.82614 1.24756 0.88347 0.84965 0.71680 1.90627 1.16531 1.86668 1.45983 1.21556 0.99427 0.87657 1.04696 1.19483 0.94943 0.91915 0.97616 1.21033 0.95629 0.90119 1.49744 0.90653 1.24962 0.98308 0.95495 0.94379 1.69901 1.35897 0.98777 1.49273 0.86801 0.86047 0.78180 0.78544 1.20161 1.21339 1.18585 1.22693 0.89453 0.89701 0.95509 1.66834 1.12908 1.07153 1.34964 1.19091 0.92822 0.89613 0.90548 0.91214 0.90574 0.92068 0.87470 0.90582 0.92211 0.91225 0.78177 0.83840 0.90271 0.90100 0.88294 0.88309 0.95598 0.96026 0.92596 0.81424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.09 9.43 37.16 0.35 -0.74 16 2 C 0.16 1.30 3.67 -67.94 -0.25 1.05 16 3 C -0.16 -1.02 9.44 37.15 0.35 -0.67 16 4 N -0.39 -4.05 3.32 -53.94 -0.18 -4.23 16 5 N -0.24 -2.40 12.21 31.85 0.39 -2.01 16 6 C 0.09 0.74 12.29 -15.18 -0.19 0.55 16 7 C -0.23 -2.42 6.38 -105.19 -0.67 -3.09 16 8 C 0.03 0.32 9.83 -39.37 -0.39 -0.07 16 9 C -0.19 -1.94 5.50 -104.85 -0.58 -2.52 16 10 C 0.12 1.33 5.60 36.00 0.20 1.53 16 11 O -0.36 -5.30 10.20 -39.25 -0.40 -5.70 16 12 C 0.46 8.11 7.96 36.01 0.29 8.39 16 13 O -0.51 -10.34 15.73 -18.75 -0.30 -10.64 16 14 C -0.10 -1.82 5.75 -27.88 -0.16 -1.98 16 15 C 0.00 -0.05 3.33 -27.88 -0.09 -0.14 16 16 C -0.53 -14.71 9.66 -34.44 -0.33 -15.05 16 17 H 0.08 2.20 7.99 -52.49 -0.42 1.78 16 18 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 19 N -0.90 -27.42 13.96 55.43 0.77 -26.64 16 20 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 23 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 24 C 0.20 2.04 10.82 -17.48 -0.19 1.85 16 25 N -0.50 -5.95 10.40 -12.34 -0.13 -6.08 16 26 C 0.32 3.72 7.92 -156.11 -1.24 2.48 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.11 0.85 8.05 -51.93 -0.42 0.43 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.20 0.91 8.06 -52.48 -0.42 0.48 16 35 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 36 H 0.08 0.86 8.08 -51.93 -0.42 0.44 16 37 H 0.08 0.87 8.08 -51.93 -0.42 0.45 16 38 H 0.10 1.75 8.14 -51.93 -0.42 1.32 16 39 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 40 H 0.03 0.64 7.16 -51.93 -0.37 0.27 16 41 H 0.02 0.53 7.53 -51.93 -0.39 0.13 16 42 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 43 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 371.59 15.07 5.60 5.60 Total: -1.00 -34.45 371.59 -8.16 -42.60 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: -6.26 Total: -3.72 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -2.99 Total: -6.45 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.86 Total: -38.96 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.70 Total: -16.34 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.45 -8.16 -42.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837738271.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.473 kcal (2) G-P(sol) polarization free energy of solvation -34.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds