Wall clock time and date at job start Tue Mar 31 2020 11:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46497 * 109.47188 * 239.99790 * 2 1 3 5 5 N 1.39839 * 125.38626 * 59.69847 * 4 2 1 6 6 C 1.30238 * 110.09130 * 179.84089 * 5 4 2 7 7 C 1.45854 * 107.65783 * 0.40743 * 6 5 4 8 8 C 1.39990 * 134.25898 * 179.69411 * 7 6 5 9 9 C 1.37026 * 118.15771 * 180.02562 * 8 7 6 10 10 C 1.50692 * 120.17761 * 179.97438 * 9 8 7 11 11 O 1.45199 * 109.47413 * 270.02113 * 10 9 8 12 12 C 1.34227 * 116.99895 * 180.02562 * 11 10 9 13 13 O 1.20830 * 120.00596 * 0.02562 * 12 11 10 14 14 C 1.50709 * 119.99944 * 179.97438 * 12 11 10 15 15 C 1.52997 * 109.46989 * 179.97438 * 14 12 11 16 16 C 1.50706 * 109.46668 * 179.97438 * 15 14 12 17 17 H 1.07995 * 120.00201 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99937 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00320 * 180.02562 * 18 16 15 20 20 Si 1.86808 * 119.99966 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47240 * 89.99430 * 20 18 16 22 22 H 1.48493 * 109.47095 * 209.99727 * 20 18 16 23 23 H 1.48506 * 109.46836 * 329.99700 * 20 18 16 24 24 C 1.38810 * 119.64297 * 359.97438 * 9 8 7 25 25 N 1.31506 * 121.58863 * 0.02562 * 24 9 8 26 26 C 1.32765 * 121.47108 * 359.97438 * 25 24 9 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 32 32 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 34 34 H 1.08009 * 126.16984 * 180.15437 * 6 5 4 35 35 H 1.08006 * 120.92545 * 0.02562 * 8 7 6 36 36 H 1.09000 * 109.47232 * 30.02310 * 10 9 8 37 37 H 1.09001 * 109.46930 * 150.02016 * 10 9 8 38 38 H 1.09001 * 109.46836 * 300.00261 * 14 12 11 39 39 H 1.08998 * 109.46821 * 59.99839 * 14 12 11 40 40 H 1.08995 * 109.47195 * 299.99995 * 15 14 12 41 41 H 1.08998 * 109.46904 * 60.00350 * 15 14 12 42 42 H 0.97002 * 120.00135 * 180.02562 * 19 18 16 43 43 H 1.07995 * 119.20476 * 179.97438 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 -1.1961 5 7 1.7459 -0.3159 -2.5155 6 6 2.3309 -1.1341 -3.3429 7 6 3.0381 -2.1338 -2.5506 8 6 3.8253 -3.2488 -2.8616 9 6 4.3444 -3.9827 -1.8274 10 6 5.1977 -5.1922 -2.1103 11 8 4.3532 -6.3699 -2.2003 12 6 4.9631 -7.5394 -2.4494 13 8 6.1629 -7.5779 -2.5873 14 6 4.1515 -8.8048 -2.5561 15 6 5.0820 -9.9848 -2.8431 16 6 4.2704 -11.2502 -2.9491 17 1 3.1982 -11.2161 -2.8247 18 6 4.8967 -12.4514 -3.2059 19 7 4.1885 -13.5556 -3.2990 20 14 6.7514 -12.5104 -3.4218 21 1 7.3961 -12.7400 -2.1039 22 1 7.1071 -13.6166 -4.3464 23 1 7.2251 -11.2213 -3.9867 24 6 4.0802 -3.6060 -0.5178 25 7 3.3389 -2.5560 -0.2393 26 6 2.8093 -1.8072 -1.1992 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.6768 1.9562 0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 2.2950 -1.0840 -4.4212 35 1 4.0182 -3.5231 -3.8883 36 1 5.7265 -5.0514 -3.0529 37 1 5.9200 -5.3237 -1.3046 38 1 3.6232 -8.9777 -1.6185 39 1 3.4297 -8.7062 -3.3669 40 1 5.6099 -9.8116 -3.7808 41 1 5.8041 -10.0835 -2.0325 42 1 4.6292 -14.4007 -3.4793 43 1 4.4925 -4.1897 0.2918 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837738271.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:24 Heat of formation + Delta-G solvation = -16.649741 kcal Electronic energy + Delta-G solvation = -24915.821166 eV Core-core repulsion = 21154.639115 eV Total energy + Delta-G solvation = -3761.182050 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.67285 -41.44035 -39.53351 -37.59530 -36.54786 -35.59470 -34.29865 -33.38298 -31.66201 -31.15785 -28.67579 -28.26008 -27.04221 -25.14683 -24.08248 -23.73755 -22.68651 -21.38198 -20.82869 -19.32768 -18.92559 -18.34316 -18.10577 -17.54320 -17.17426 -16.65592 -16.53816 -16.24496 -15.69229 -15.40215 -15.21437 -14.80284 -14.65962 -14.47567 -14.35580 -14.06412 -13.81558 -13.62416 -13.47290 -13.17207 -13.13603 -13.04376 -12.89839 -12.46375 -12.44475 -12.20169 -11.99088 -11.82010 -11.79081 -11.66853 -11.60249 -11.41725 -11.28596 -10.76521 -10.57053 -10.08666 -9.34465 -8.29443 -6.33680 -0.27199 0.02108 1.08470 1.27544 1.37141 1.39186 1.42648 1.52642 1.81530 2.36899 2.71837 3.06146 3.07674 3.19394 3.53529 3.60055 3.79179 3.85906 3.91693 4.03037 4.05713 4.11762 4.21212 4.36125 4.43463 4.44347 4.51282 4.58375 4.62086 4.70541 4.74902 4.83435 4.90499 5.07519 5.10828 5.15157 5.29653 5.29983 5.40807 5.41135 5.49141 5.62184 5.79690 6.23883 6.38089 6.72295 6.80231 6.86306 7.31481 8.86088 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.031779 B = 0.002032 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.881031 B =13777.845745 C =13948.460808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.154 3.846 3 C -0.151 4.151 4 N -0.393 5.393 5 N -0.257 5.257 6 C 0.096 3.904 7 C -0.248 4.248 8 C 0.040 3.960 9 C -0.195 4.195 10 C 0.115 3.885 11 O -0.355 6.355 12 C 0.473 3.527 13 O -0.538 6.538 14 C -0.094 4.094 15 C 0.002 3.998 16 C -0.532 4.532 17 H 0.049 0.951 18 C 0.012 3.988 19 N -0.944 5.944 20 Si 0.940 3.060 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.255 1.255 24 C 0.191 3.809 25 N -0.525 5.525 26 C 0.295 3.705 27 H 0.063 0.937 28 H 0.100 0.900 29 H 0.045 0.955 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.048 0.952 33 H 0.063 0.937 34 H 0.239 0.761 35 H 0.169 0.831 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.019 0.981 41 H 0.017 0.983 42 H 0.267 0.733 43 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.449 32.497 4.243 32.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.053 3.947 3 C -0.209 4.209 4 N -0.184 5.184 5 N -0.069 5.069 6 C -0.102 4.102 7 C -0.258 4.258 8 C 0.012 3.988 9 C -0.199 4.199 10 C 0.042 3.958 11 O -0.273 6.273 12 C 0.318 3.682 13 O -0.428 6.428 14 C -0.131 4.131 15 C -0.036 4.036 16 C -0.569 4.569 17 H 0.068 0.932 18 C -0.186 4.186 19 N -0.584 5.584 20 Si 0.765 3.235 21 H -0.193 1.193 22 H -0.207 1.207 23 H -0.179 1.179 24 C 0.022 3.978 25 N -0.240 5.240 26 C 0.056 3.944 27 H 0.082 0.918 28 H 0.118 0.882 29 H 0.064 0.936 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.255 0.745 35 H 0.187 0.813 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.129 0.871 39 H 0.130 0.870 40 H 0.037 0.963 41 H 0.036 0.964 42 H 0.076 0.924 43 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -4.126 33.830 5.310 34.492 hybrid contribution 1.384 -1.511 -0.892 2.235 sum -2.742 32.319 4.418 32.735 Atomic orbital electron populations 1.22095 0.92534 1.02251 1.04220 1.21541 0.96030 0.94207 0.82893 1.22080 1.00927 0.93707 1.04202 1.48793 1.42514 1.21855 1.05261 1.76638 1.20521 1.22604 0.87125 1.25722 0.93245 0.89832 1.01393 1.20773 1.08853 1.02328 0.93821 1.21033 0.87843 0.88781 1.01138 1.19956 1.06307 0.98887 0.94791 1.21723 0.90739 0.79263 1.04099 1.86604 1.42524 1.16314 1.81809 1.24187 0.87443 0.85437 0.71146 1.90622 1.17508 1.87216 1.47473 1.21335 0.98761 0.87081 1.05923 1.19326 0.95110 0.92121 0.97047 1.21366 0.95008 0.91948 1.48620 0.93228 1.25839 1.03088 0.95256 0.94385 1.70027 1.37938 0.99527 1.50912 0.85797 0.80373 0.78480 0.78890 1.19301 1.20656 1.17882 1.23040 0.88967 0.89463 0.96309 1.66854 1.13776 1.07859 1.35489 1.19466 0.93331 0.90189 0.91409 0.91756 0.88181 0.93588 0.87902 0.88222 0.93312 0.91773 0.74454 0.81336 0.89238 0.89218 0.87055 0.87007 0.96253 0.96434 0.92365 0.79719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.43 71.98 0.68 -1.28 16 2 C 0.15 2.38 3.67 44.99 0.17 2.55 16 3 C -0.15 -1.80 9.44 71.98 0.68 -1.12 16 4 N -0.39 -8.06 3.32 -324.57 -1.08 -9.14 16 5 N -0.26 -4.94 12.21 -53.14 -0.65 -5.59 16 6 C 0.10 1.46 12.29 86.90 1.07 2.53 16 7 C -0.25 -4.77 6.38 -20.23 -0.13 -4.89 16 8 C 0.04 0.68 9.83 22.41 0.22 0.90 16 9 C -0.20 -3.70 5.50 -20.01 -0.11 -3.81 16 10 C 0.12 2.39 5.60 71.23 0.40 2.79 16 11 O -0.36 -9.65 10.20 -51.39 -0.52 -10.17 16 12 C 0.47 15.79 7.96 71.24 0.57 16.35 16 13 O -0.54 -20.80 15.73 21.95 0.35 -20.46 16 14 C -0.09 -3.41 5.75 29.85 0.17 -3.24 16 15 C 0.00 0.07 3.33 29.85 0.10 0.17 16 16 C -0.53 -29.78 9.66 25.60 0.25 -29.53 16 17 H 0.05 2.95 7.99 -2.91 -0.02 2.93 16 18 C 0.01 0.70 5.47 84.66 0.46 1.16 16 19 N -0.94 -58.19 13.96 21.45 0.30 -57.89 16 20 Si 0.94 44.94 27.47 68.60 1.88 46.82 16 21 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 22 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 23 H -0.25 -11.82 6.54 99.48 0.65 -11.16 16 24 C 0.19 3.77 10.82 84.88 0.92 4.69 16 25 N -0.53 -12.16 10.40 -192.96 -2.01 -14.16 16 26 C 0.29 6.74 7.92 134.12 1.06 7.80 16 27 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.04 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.10 1.64 8.05 -2.39 -0.02 1.62 16 31 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.24 1.40 8.06 -2.91 -0.02 1.38 16 35 H 0.17 1.90 8.06 -2.91 -0.02 1.87 16 36 H 0.09 1.71 8.08 -2.39 -0.02 1.69 16 37 H 0.09 1.73 8.08 -2.39 -0.02 1.71 16 38 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 39 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 40 H 0.02 0.92 7.16 -2.39 -0.02 0.91 16 41 H 0.02 0.83 7.53 -2.39 -0.02 0.81 16 42 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 43 H 0.19 2.75 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -74.16 371.59 5.73 -68.44 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: 0.95 Total: 7.07 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: 6.50 Total: -4.92 kcal Atomic # 7 Polarization: -83.35 SS G_CDS: -3.43 Total: -86.78 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -0.18 Total: -30.63 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.88 Total: 46.82 kcal Total: -74.16 5.73 -68.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837738271.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.787 kcal (2) G-P(sol) polarization free energy of solvation -74.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds