Wall clock time and date at job start Tue Mar 31 2020 11:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46900 * 110.99812 * 2 1 4 4 C 1.46893 * 111.00537 * 123.95586 * 2 1 3 5 5 C 1.53003 * 109.47418 * 161.66492 * 4 2 1 6 6 C 1.53004 * 109.47091 * 183.43558 * 5 4 2 7 7 C 1.47204 * 109.46949 * 63.43770 * 5 4 2 8 8 N 3.64209 * 159.74606 * 34.31438 * 2 1 3 9 9 N 1.46502 * 109.47090 * 303.43642 * 5 4 2 10 10 C 1.34772 * 119.99892 * 176.30586 * 9 5 4 11 11 O 1.21590 * 120.00064 * 0.02562 * 10 9 5 12 12 C 1.47535 * 119.99961 * 179.97438 * 10 9 5 13 13 C 1.39666 * 120.19570 * 359.97438 * 12 10 9 14 14 C 1.37831 * 119.91625 * 179.97438 * 13 12 10 15 15 C 1.38571 * 120.32498 * 0.02562 * 14 13 12 16 16 C 1.38023 * 120.40280 * 0.02562 * 15 14 13 17 17 C 1.38837 * 120.07256 * 359.95598 * 16 15 14 18 18 O 1.35524 * 120.16306 * 180.02562 * 17 16 15 19 19 C 1.34814 * 116.99526 * 353.41260 * 18 17 16 20 20 H 1.07994 * 120.00294 * 5.06946 * 19 18 17 21 21 C 1.38706 * 119.99571 * 185.06980 * 19 18 17 22 22 N 1.31518 * 119.99890 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99734 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47080 * 60.00206 * 23 21 19 25 25 H 1.48502 * 109.47021 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47230 * 299.99835 * 23 21 19 27 27 H 1.08998 * 109.47471 * 296.03904 * 1 2 3 28 28 H 1.08996 * 109.47428 * 56.04527 * 1 2 3 29 29 H 1.09004 * 109.46667 * 176.04389 * 1 2 3 30 30 H 1.08999 * 109.47688 * 197.93104 * 3 2 1 31 31 H 1.09000 * 109.47206 * 317.93849 * 3 2 1 32 32 H 1.09007 * 109.47204 * 77.93116 * 3 2 1 33 33 H 1.09005 * 109.47071 * 41.66639 * 4 2 1 34 34 H 1.08998 * 109.47269 * 281.67201 * 4 2 1 35 35 H 1.08999 * 109.46852 * 180.02562 * 6 5 4 36 36 H 1.08995 * 109.46764 * 300.00369 * 6 5 4 37 37 H 1.09002 * 109.46703 * 60.00156 * 6 5 4 38 38 H 0.96995 * 120.00033 * 356.30624 * 9 5 4 39 39 H 1.07993 * 120.03904 * 0.02562 * 13 12 10 40 40 H 1.07998 * 119.83281 * 180.29974 * 14 13 12 41 41 H 1.07995 * 119.79957 * 180.02562 * 15 14 13 42 42 H 1.08002 * 119.96482 * 179.97438 * 16 15 14 43 43 H 0.96999 * 120.00085 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.4566 -1.1342 0.8719 6 6 3.9795 -2.0043 2.0167 7 6 4.2633 0.0938 0.7809 8 7 4.8858 1.0414 0.7108 9 7 3.5521 -1.8757 -0.3880 10 6 4.7584 -2.2410 -0.8651 11 8 5.7675 -1.9556 -0.2497 12 6 4.8546 -2.9882 -2.1336 13 6 3.6981 -3.3196 -2.8431 14 6 3.7946 -4.0173 -4.0278 15 6 5.0345 -4.3929 -4.5195 16 6 6.1859 -4.0734 -3.8288 17 6 6.1080 -3.3706 -2.6339 18 8 7.2374 -3.0554 -1.9544 19 6 8.3942 -3.5692 -2.4184 20 1 8.4039 -4.1325 -3.3397 21 6 9.5721 -3.3743 -1.7123 22 7 9.5604 -2.6878 -0.5906 23 14 11.1752 -4.0855 -2.3555 24 1 11.4640 -3.5205 -3.6981 25 1 12.2791 -3.7396 -1.4244 26 1 11.0568 -5.5624 -2.4550 27 1 -0.3634 0.4511 0.9233 28 1 -0.3634 0.5740 -0.8524 29 1 -0.3633 -1.0253 -0.0709 30 1 3.0384 1.3604 -0.3164 31 1 1.4133 1.9841 -0.6885 32 1 1.9250 1.7877 1.0050 33 1 1.4090 -1.6758 1.2655 34 1 1.9317 -0.1623 2.0428 35 1 5.0205 -2.2662 1.8276 36 1 3.9084 -1.4526 2.9540 37 1 3.3821 -2.9135 2.0839 38 1 2.7471 -2.1036 -0.8788 39 1 2.7295 -3.0287 -2.4643 40 1 2.8998 -4.2686 -4.5778 41 1 5.1003 -4.9391 -5.4489 42 1 7.1486 -4.3700 -4.2183 43 1 10.3842 -2.5512 -0.0970 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844528451.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:33 Heat of formation + Delta-G solvation = 22.284949 kcal Electronic energy + Delta-G solvation = -26989.392033 eV Core-core repulsion = 23229.898318 eV Total energy + Delta-G solvation = -3759.493716 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.11342 -38.97274 -37.52679 -36.33159 -35.78841 -34.49730 -32.32294 -31.65957 -29.70291 -28.88487 -27.80193 -27.20750 -25.37677 -23.91795 -22.85864 -21.89269 -21.38552 -20.13805 -18.10097 -17.67147 -17.39918 -16.24853 -16.03142 -15.35348 -15.17461 -14.68341 -14.48513 -14.28560 -14.12470 -13.97444 -13.71936 -13.39838 -13.24729 -12.96638 -12.88379 -12.66166 -12.64147 -12.46676 -12.16092 -11.97517 -11.93510 -11.69328 -11.64902 -11.43739 -11.26475 -11.09836 -10.86506 -10.84595 -10.74968 -10.46085 -9.55079 -8.86380 -8.84043 -8.76461 -8.63200 -8.25290 -7.28836 -6.42037 -4.02082 1.72989 2.35066 2.83329 3.09397 3.13240 3.15229 3.17774 3.61432 3.66856 3.82026 3.95440 4.09010 4.57930 4.66558 4.86539 5.06084 5.09219 5.10996 5.17119 5.21169 5.29032 5.39033 5.44967 5.50823 5.55375 5.62021 5.69445 5.78590 5.81715 5.87814 6.09846 6.14780 6.39094 6.59263 6.65391 6.70218 6.71761 6.86555 6.93915 7.08803 7.26206 7.31213 7.71989 7.86730 7.93923 8.11440 8.97052 9.05728 9.69510 10.71415 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014895 B = 0.004265 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.330701 B = 6563.941635 C = 7894.658642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.544 5.544 3 C 0.008 3.992 4 C 0.053 3.947 5 C 0.288 3.712 6 C -0.163 4.163 7 C 0.216 3.784 8 N -0.422 5.422 9 N -0.720 5.720 10 C 0.554 3.446 11 O -0.493 6.493 12 C -0.226 4.226 13 C -0.035 4.035 14 C -0.231 4.231 15 C -0.050 4.050 16 C -0.238 4.238 17 C 0.189 3.811 18 O -0.123 6.123 19 C -0.404 4.404 20 H 0.093 0.907 21 C 0.045 3.955 22 N -0.832 5.832 23 Si 0.940 3.060 24 H -0.269 1.269 25 H -0.277 1.277 26 H -0.268 1.268 27 H 0.026 0.974 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.029 0.971 33 H 0.102 0.898 34 H 0.060 0.940 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.406 0.594 39 H 0.114 0.886 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.131 0.869 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.524 -0.201 1.496 18.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.267 5.267 3 C -0.140 4.140 4 C -0.076 4.076 5 C 0.197 3.803 6 C -0.223 4.223 7 C -0.103 4.103 8 N -0.098 5.098 9 N -0.379 5.379 10 C 0.344 3.656 11 O -0.366 6.366 12 C -0.231 4.231 13 C -0.053 4.053 14 C -0.250 4.250 15 C -0.069 4.069 16 C -0.258 4.258 17 C 0.130 3.870 18 O -0.021 6.021 19 C -0.480 4.480 20 H 0.110 0.890 21 C -0.163 4.163 22 N -0.463 5.463 23 Si 0.764 3.236 24 H -0.194 1.194 25 H -0.202 1.202 26 H -0.193 1.193 27 H 0.044 0.956 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.048 0.952 33 H 0.120 0.880 34 H 0.078 0.922 35 H 0.112 0.888 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.243 0.757 39 H 0.132 0.868 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.148 0.852 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.401 1.447 1.827 16.566 hybrid contribution -0.079 -0.405 -0.049 0.415 sum -16.480 1.042 1.778 16.609 Atomic orbital electron populations 1.22439 0.86689 1.02567 1.00675 1.61903 1.08129 1.14429 1.42288 1.22816 1.02576 0.88292 1.00342 1.22517 0.92682 0.99806 0.92635 1.17487 0.91384 0.83775 0.87701 1.22245 1.05238 0.99314 0.95500 1.29096 0.93314 0.94104 0.93836 1.81106 1.08657 1.13304 1.06776 1.45877 1.09731 1.58729 1.23526 1.18337 0.82658 0.79257 0.85322 1.90958 1.34445 1.52933 1.58222 1.18754 0.91836 1.13637 0.98852 1.20783 0.95669 0.94917 0.93981 1.20460 0.96930 1.08415 0.99202 1.20896 0.92363 0.95997 0.97638 1.21146 0.99317 1.07630 0.97668 1.19281 0.87201 0.90425 0.90134 1.84169 1.11747 1.59054 1.47138 1.21439 0.83124 1.34731 1.08685 0.88953 1.25372 0.98944 0.96573 0.95370 1.70118 1.28493 1.34469 1.13181 0.85813 0.79762 0.79306 0.78735 1.19397 1.20191 1.19349 0.95580 0.91113 0.90911 0.90210 0.91304 0.95231 0.88017 0.92171 0.88812 0.91394 0.90396 0.75692 0.86772 0.87271 0.87253 0.85166 0.91846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.48 60.06 0.57 0.74 16 2 N -0.54 -5.36 4.53 -251.26 -1.14 -6.50 16 3 C 0.01 0.09 8.71 60.06 0.52 0.61 16 4 C 0.05 0.49 4.19 -3.83 -0.02 0.48 16 5 C 0.29 3.95 0.78 -134.60 -0.10 3.84 16 6 C -0.16 -2.13 8.41 37.16 0.31 -1.82 16 7 C 0.22 3.83 9.44 -20.76 -0.20 3.63 16 8 N -0.42 -8.60 17.50 42.15 0.74 -7.86 16 9 N -0.72 -10.97 4.86 -51.25 -0.25 -11.22 16 10 C 0.55 11.71 7.18 -12.47 -0.09 11.62 16 11 O -0.49 -12.95 12.45 -16.57 -0.21 -13.16 16 12 C -0.23 -4.80 5.89 -104.81 -0.62 -5.42 16 13 C -0.03 -0.58 9.54 -39.20 -0.37 -0.95 16 14 C -0.23 -3.70 10.02 -39.61 -0.40 -4.10 16 15 C -0.05 -0.88 10.03 -39.54 -0.40 -1.28 16 16 C -0.24 -5.10 9.16 -39.44 -0.36 -5.46 16 17 C 0.19 4.67 6.66 -38.60 -0.26 4.41 16 18 O -0.12 -3.62 7.84 -21.07 -0.17 -3.79 16 19 C -0.40 -11.48 9.49 30.91 0.29 -11.18 16 20 H 0.09 2.38 5.21 -52.49 -0.27 2.10 16 21 C 0.05 1.27 5.49 -17.51 -0.10 1.18 16 22 N -0.83 -25.31 13.67 55.48 0.76 -24.55 16 23 Si 0.94 20.73 29.55 -169.99 -5.02 15.71 16 24 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 25 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 26 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 27 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.07 0.46 7.99 -51.93 -0.41 0.05 16 29 H 0.07 0.40 8.07 -51.93 -0.42 -0.02 16 30 H 0.08 1.19 4.82 -51.93 -0.25 0.94 16 31 H 0.07 0.68 7.86 -51.93 -0.41 0.27 16 32 H 0.03 0.32 7.79 -51.93 -0.40 -0.09 16 33 H 0.10 0.66 7.91 -51.93 -0.41 0.25 16 34 H 0.06 0.50 7.79 -51.93 -0.40 0.10 16 35 H 0.09 1.67 6.44 -51.93 -0.33 1.33 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.41 4.99 6.29 -40.82 -0.26 4.73 16 39 H 0.11 1.44 6.40 -52.49 -0.34 1.11 16 40 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 41 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 42 H 0.13 2.76 5.65 -52.49 -0.30 2.46 16 43 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 357.25 15.07 5.38 5.38 Total: -1.00 -36.26 357.25 -6.57 -42.83 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -5.46 Total: 6.84 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -1.21 Total: -3.69 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: 0.11 Total: -50.12 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -0.37 Total: -16.95 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -36.26 -6.57 -42.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844528451.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.110 kcal (2) G-P(sol) polarization free energy of solvation -36.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds