Wall clock time and date at job start Tue Mar 31 2020 11:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46900 * 110.99812 * 2 1 4 4 C 1.46893 * 111.00537 * 123.95586 * 2 1 3 5 5 C 1.53003 * 109.47418 * 161.66492 * 4 2 1 6 6 C 1.53004 * 109.47091 * 183.43558 * 5 4 2 7 7 C 1.47204 * 109.46949 * 63.43770 * 5 4 2 8 8 N 3.64209 * 159.74606 * 34.31438 * 2 1 3 9 9 N 1.46502 * 109.47090 * 303.43642 * 5 4 2 10 10 C 1.34772 * 119.99892 * 176.30586 * 9 5 4 11 11 O 1.21590 * 120.00064 * 0.02562 * 10 9 5 12 12 C 1.47535 * 119.99961 * 179.97438 * 10 9 5 13 13 C 1.39666 * 120.19570 * 359.97438 * 12 10 9 14 14 C 1.37831 * 119.91625 * 179.97438 * 13 12 10 15 15 C 1.38571 * 120.32498 * 0.02562 * 14 13 12 16 16 C 1.38023 * 120.40280 * 0.02562 * 15 14 13 17 17 C 1.38837 * 120.07256 * 359.95598 * 16 15 14 18 18 O 1.35524 * 120.16306 * 180.02562 * 17 16 15 19 19 C 1.34814 * 116.99526 * 353.41260 * 18 17 16 20 20 H 1.07994 * 120.00294 * 5.06946 * 19 18 17 21 21 C 1.38706 * 119.99571 * 185.06980 * 19 18 17 22 22 N 1.31518 * 119.99890 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99734 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47080 * 60.00206 * 23 21 19 25 25 H 1.48502 * 109.47021 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47230 * 299.99835 * 23 21 19 27 27 H 1.08998 * 109.47471 * 296.03904 * 1 2 3 28 28 H 1.08996 * 109.47428 * 56.04527 * 1 2 3 29 29 H 1.09004 * 109.46667 * 176.04389 * 1 2 3 30 30 H 1.08999 * 109.47688 * 197.93104 * 3 2 1 31 31 H 1.09000 * 109.47206 * 317.93849 * 3 2 1 32 32 H 1.09007 * 109.47204 * 77.93116 * 3 2 1 33 33 H 1.09005 * 109.47071 * 41.66639 * 4 2 1 34 34 H 1.08998 * 109.47269 * 281.67201 * 4 2 1 35 35 H 1.08999 * 109.46852 * 180.02562 * 6 5 4 36 36 H 1.08995 * 109.46764 * 300.00369 * 6 5 4 37 37 H 1.09002 * 109.46703 * 60.00156 * 6 5 4 38 38 H 0.96995 * 120.00033 * 356.30624 * 9 5 4 39 39 H 1.07993 * 120.03904 * 0.02562 * 13 12 10 40 40 H 1.07998 * 119.83281 * 180.29974 * 14 13 12 41 41 H 1.07995 * 119.79957 * 180.02562 * 15 14 13 42 42 H 1.08002 * 119.96482 * 179.97438 * 16 15 14 43 43 H 0.96999 * 120.00085 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.4566 -1.1342 0.8719 6 6 3.9795 -2.0043 2.0167 7 6 4.2633 0.0938 0.7809 8 7 4.8858 1.0414 0.7108 9 7 3.5521 -1.8757 -0.3880 10 6 4.7584 -2.2410 -0.8651 11 8 5.7675 -1.9556 -0.2497 12 6 4.8546 -2.9882 -2.1336 13 6 3.6981 -3.3196 -2.8431 14 6 3.7946 -4.0173 -4.0278 15 6 5.0345 -4.3929 -4.5195 16 6 6.1859 -4.0734 -3.8288 17 6 6.1080 -3.3706 -2.6339 18 8 7.2374 -3.0554 -1.9544 19 6 8.3942 -3.5692 -2.4184 20 1 8.4039 -4.1325 -3.3397 21 6 9.5721 -3.3743 -1.7123 22 7 9.5604 -2.6878 -0.5906 23 14 11.1752 -4.0855 -2.3555 24 1 11.4640 -3.5205 -3.6981 25 1 12.2791 -3.7396 -1.4244 26 1 11.0568 -5.5624 -2.4550 27 1 -0.3634 0.4511 0.9233 28 1 -0.3634 0.5740 -0.8524 29 1 -0.3633 -1.0253 -0.0709 30 1 3.0384 1.3604 -0.3164 31 1 1.4133 1.9841 -0.6885 32 1 1.9250 1.7877 1.0050 33 1 1.4090 -1.6758 1.2655 34 1 1.9317 -0.1623 2.0428 35 1 5.0205 -2.2662 1.8276 36 1 3.9084 -1.4526 2.9540 37 1 3.3821 -2.9135 2.0839 38 1 2.7471 -2.1036 -0.8788 39 1 2.7295 -3.0287 -2.4643 40 1 2.8998 -4.2686 -4.5778 41 1 5.1003 -4.9391 -5.4489 42 1 7.1486 -4.3700 -4.2183 43 1 10.3842 -2.5512 -0.0970 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844528451.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:32 Heat of formation + Delta-G solvation = -6.024025 kcal Electronic energy + Delta-G solvation = -26990.619602 eV Core-core repulsion = 23229.898318 eV Total energy + Delta-G solvation = -3760.721285 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.55592 -40.46697 -38.90657 -37.97698 -37.05569 -35.84552 -34.31534 -33.09494 -31.10541 -30.51202 -28.49583 -28.07627 -27.36209 -25.19361 -24.20336 -23.07807 -22.68818 -21.63945 -19.86782 -19.29727 -18.77656 -17.89262 -17.03864 -16.41436 -16.33317 -16.11535 -15.99061 -15.90948 -15.68993 -15.29425 -15.15819 -14.99058 -14.49689 -14.39289 -14.21054 -14.18676 -13.61600 -13.55410 -13.53553 -13.29090 -13.13763 -12.95808 -12.79106 -12.62916 -12.49622 -12.44396 -12.36745 -12.30706 -12.14877 -11.88802 -11.38505 -10.81582 -10.51429 -10.24177 -9.76525 -9.37157 -8.99717 -8.43695 -6.14382 0.17129 0.77953 1.30767 1.43872 1.46256 1.48581 1.74470 2.10681 2.15826 2.44595 2.82114 2.90391 2.94036 3.27784 3.50926 3.64824 3.90997 4.12383 4.14138 4.25390 4.28712 4.34427 4.46407 4.57430 4.63339 4.64983 4.74878 4.75360 4.80633 4.84074 4.95754 5.03336 5.09144 5.18427 5.19952 5.27743 5.48850 5.53459 5.65283 5.74758 5.93254 5.96664 6.05892 6.22262 6.50309 6.76602 6.95813 7.52075 7.82710 8.76273 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014895 B = 0.004265 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.330701 B = 6563.941635 C = 7894.658642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.555 5.555 3 C 0.012 3.988 4 C 0.061 3.939 5 C 0.281 3.719 6 C -0.160 4.160 7 C 0.230 3.770 8 N -0.483 5.483 9 N -0.692 5.692 10 C 0.549 3.451 11 O -0.554 6.554 12 C -0.242 4.242 13 C -0.025 4.025 14 C -0.200 4.200 15 C -0.041 4.041 16 C -0.261 4.261 17 C 0.148 3.852 18 O -0.189 6.189 19 C -0.426 4.426 20 H 0.106 0.894 21 C -0.022 4.022 22 N -0.906 5.906 23 Si 1.019 2.981 24 H -0.256 1.256 25 H -0.275 1.275 26 H -0.251 1.251 27 H 0.035 0.965 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.039 0.961 31 H 0.080 0.920 32 H 0.031 0.969 33 H 0.146 0.854 34 H 0.076 0.924 35 H 0.037 0.963 36 H 0.091 0.909 37 H 0.114 0.886 38 H 0.424 0.576 39 H 0.166 0.834 40 H 0.165 0.835 41 H 0.151 0.849 42 H 0.119 0.881 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.765 -2.321 -0.401 23.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.279 5.279 3 C -0.137 4.137 4 C -0.068 4.068 5 C 0.190 3.810 6 C -0.220 4.220 7 C -0.088 4.088 8 N -0.161 5.161 9 N -0.350 5.350 10 C 0.339 3.661 11 O -0.432 6.432 12 C -0.247 4.247 13 C -0.043 4.043 14 C -0.218 4.218 15 C -0.059 4.059 16 C -0.280 4.280 17 C 0.093 3.907 18 O -0.092 6.092 19 C -0.502 4.502 20 H 0.123 0.877 21 C -0.221 4.221 22 N -0.541 5.541 23 Si 0.838 3.162 24 H -0.180 1.180 25 H -0.200 1.200 26 H -0.175 1.175 27 H 0.053 0.947 28 H 0.090 0.910 29 H 0.114 0.886 30 H 0.057 0.943 31 H 0.099 0.901 32 H 0.050 0.950 33 H 0.163 0.837 34 H 0.094 0.906 35 H 0.056 0.944 36 H 0.110 0.890 37 H 0.132 0.868 38 H 0.265 0.735 39 H 0.183 0.817 40 H 0.183 0.817 41 H 0.169 0.831 42 H 0.137 0.863 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -21.779 -0.696 -0.126 21.790 hybrid contribution 1.027 0.210 0.359 1.108 sum -20.751 -0.486 0.233 20.758 Atomic orbital electron populations 1.22522 0.84144 1.04238 1.01288 1.61852 1.10246 1.13155 1.42627 1.22674 1.00459 0.89959 1.00631 1.22610 0.89249 1.01950 0.93010 1.18121 0.94096 0.81922 0.86903 1.22230 1.02376 1.01105 0.96250 1.30045 0.92345 0.94250 0.92203 1.81086 1.10720 1.15734 1.08536 1.45563 1.08394 1.57154 1.23921 1.18576 0.83434 0.78880 0.85219 1.90963 1.37075 1.55303 1.59844 1.19277 0.92406 1.13479 0.99542 1.21354 0.95876 0.93456 0.93609 1.21190 0.98140 1.04447 0.98018 1.21425 0.91447 0.94699 0.98358 1.21281 1.00854 1.08432 0.97414 1.20125 0.87543 0.91675 0.91399 1.84176 1.12952 1.62428 1.49627 1.21967 0.83867 1.35104 1.09287 0.87719 1.26721 1.03024 0.96911 0.95452 1.70326 1.29261 1.38601 1.15954 0.84660 0.74166 0.79120 0.78264 1.18022 1.19982 1.17528 0.94655 0.90962 0.88583 0.94271 0.90136 0.95048 0.83652 0.90609 0.94366 0.89005 0.86750 0.73503 0.81684 0.81724 0.83090 0.86275 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.48 127.69 1.21 1.43 16 2 N -0.55 -8.89 4.53 -948.86 -4.30 -13.19 16 3 C 0.01 0.25 8.71 127.69 1.11 1.36 16 4 C 0.06 0.88 4.19 86.31 0.36 1.25 16 5 C 0.28 7.35 0.78 1.80 0.00 7.36 16 6 C -0.16 -4.08 8.41 71.98 0.61 -3.47 16 7 C 0.23 8.50 9.44 89.44 0.84 9.34 16 8 N -0.48 -21.15 17.50 20.01 0.35 -20.80 16 9 N -0.69 -19.96 4.86 -434.33 -2.11 -22.07 16 10 C 0.55 23.83 7.18 86.70 0.62 24.45 16 11 O -0.55 -31.61 12.45 16.90 0.21 -31.40 16 12 C -0.24 -10.25 5.89 -19.99 -0.12 -10.37 16 13 C -0.02 -0.70 9.54 22.52 0.21 -0.49 16 14 C -0.20 -5.11 10.02 22.25 0.22 -4.88 16 15 C -0.04 -1.27 10.03 22.30 0.22 -1.04 16 16 C -0.26 -11.16 9.16 22.36 0.20 -10.96 16 17 C 0.15 7.59 6.66 22.91 0.15 7.74 16 18 O -0.19 -12.13 7.84 0.80 0.01 -12.12 16 19 C -0.43 -26.17 9.49 67.93 0.64 -25.53 16 20 H 0.11 5.77 5.21 -2.91 -0.02 5.75 16 21 C -0.02 -1.33 5.49 84.85 0.47 -0.87 16 22 N -0.91 -60.52 13.67 21.62 0.30 -60.23 16 23 Si 1.02 45.25 29.55 68.60 2.03 47.28 16 24 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 25 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 26 H -0.25 -10.25 7.11 99.48 0.71 -9.55 16 27 H 0.03 0.27 8.14 -2.39 -0.02 0.25 16 28 H 0.07 0.64 7.99 -2.39 -0.02 0.62 16 29 H 0.10 0.43 8.07 -2.38 -0.02 0.41 16 30 H 0.04 1.18 4.82 -2.39 -0.01 1.17 16 31 H 0.08 1.48 7.86 -2.39 -0.02 1.46 16 32 H 0.03 0.64 7.79 -2.38 -0.02 0.62 16 33 H 0.15 0.92 7.91 -2.38 -0.02 0.91 16 34 H 0.08 0.96 7.79 -2.39 -0.02 0.94 16 35 H 0.04 1.44 6.44 -2.39 -0.02 1.42 16 36 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.42 8.62 6.29 -92.71 -0.58 8.04 16 39 H 0.17 2.99 6.40 -2.91 -0.02 2.97 16 40 H 0.17 2.64 8.06 -2.91 -0.02 2.61 16 41 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 42 H 0.12 5.23 5.65 -2.91 -0.02 5.22 16 43 H 0.27 16.58 8.31 -92.71 -0.77 15.81 16 Total: -1.00 -96.12 357.25 3.73 -92.39 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 0.47 Total: 24.81 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: 6.77 Total: -4.69 kcal Atomic # 7 Polarization: -110.52 SS G_CDS: -5.76 Total: -116.28 kcal Atomic # 8 Polarization: -43.74 SS G_CDS: 0.22 Total: -43.52 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -96.12 3.73 -92.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844528451.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.369 kcal (2) G-P(sol) polarization free energy of solvation -96.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds