Wall clock time and date at job start Tue Mar 31 2020 12:41:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42897 * 1
3 3 C 1.42901 * 114.00256 * 2 1
4 4 C 1.53001 * 109.47014 * 179.97438 * 3 2 1
5 5 C 1.52999 * 109.47172 * 60.00054 * 4 3 2
6 6 O 1.42899 * 109.47539 * 300.00004 * 4 3 2
7 7 C 1.50706 * 109.46673 * 180.02562 * 4 3 2
8 8 C 1.35348 * 126.74901 * 120.24575 * 7 4 3
9 9 N 1.35311 * 106.17494 * 180.12100 * 8 7 4
10 10 C 1.46503 * 125.87141 * 179.90649 * 9 8 7
11 11 C 1.50696 * 109.47063 * 124.71936 * 10 9 8
12 12 C 1.38636 * 119.74948 * 269.72474 * 11 10 9
13 13 C 1.37617 * 120.25050 * 179.72057 * 12 11 10
14 14 C 1.40719 * 119.74175 * 0.58100 * 13 12 11
15 15 C 1.41392 * 120.24273 * 179.68205 * 14 13 12
16 16 H 1.07999 * 120.00170 * 24.40487 * 15 14 13
17 17 C 1.39955 * 119.99836 * 204.40553 * 15 14 13
18 18 N 1.30816 * 119.99751 * 17.85321 * 17 15 14
19 19 Si 1.86797 * 119.99894 * 197.85530 * 17 15 14
20 20 H 1.48490 * 109.47161 * 90.00114 * 19 17 15
21 21 H 1.48500 * 109.46785 * 210.00237 * 19 17 15
22 22 H 1.48502 * 109.47156 * 330.00043 * 19 17 15
23 23 C 1.40718 * 119.51171 * 359.69510 * 14 13 12
24 24 C 1.37614 * 119.74273 * 0.02562 * 23 14 13
25 25 N 1.28715 * 108.26207 * 359.64805 * 9 8 7
26 26 N 1.28640 * 110.18058 * 0.21916 * 25 9 8
27 27 H 1.08999 * 109.47110 * 179.97438 * 1 2 3
28 28 H 1.08997 * 109.47201 * 300.00049 * 1 2 3
29 29 H 1.09007 * 109.46985 * 60.00534 * 1 2 3
30 30 H 1.08997 * 109.46775 * 59.99827 * 3 2 1
31 31 H 1.08995 * 109.46638 * 299.99779 * 3 2 1
32 32 H 1.08992 * 109.47175 * 179.97438 * 5 4 3
33 33 H 1.08998 * 109.47249 * 299.99988 * 5 4 3
34 34 H 1.09009 * 109.46909 * 59.99795 * 5 4 3
35 35 H 0.96702 * 113.99468 * 300.00727 * 6 4 3
36 36 H 1.08001 * 126.91586 * 0.02562 * 8 7 4
37 37 H 1.09001 * 109.46813 * 244.71975 * 10 9 8
38 38 H 1.09004 * 109.46672 * 4.71621 * 10 9 8
39 39 H 1.08003 * 119.87688 * 359.97438 * 12 11 10
40 40 H 1.08001 * 120.13088 * 180.27703 * 13 12 11
41 41 H 0.97004 * 120.00349 * 180.02562 * 18 17 15
42 42 H 1.07993 * 120.12809 * 179.97438 * 23 14 13
43 43 H 1.08003 * 119.87704 * 180.02562 * 24 23 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 6 3.5355 1.1845 0.0006
5 6 3.9874 0.4250 -1.2483
6 8 3.9567 0.4756 1.1677
7 6 4.1484 2.5613 0.0013
8 6 4.9764 3.0787 0.9387
9 7 5.2709 4.3345 0.5297
10 6 6.1374 5.2848 1.2314
11 6 7.2288 5.7500 0.3022
12 6 8.4285 5.0573 0.2489
13 6 9.4300 5.4697 -0.6000
14 6 9.2373 6.6064 -1.4069
15 6 10.2617 7.0434 -2.2780
16 1 11.0044 6.3438 -2.6321
17 6 10.3131 8.3825 -2.6815
18 7 9.6586 9.2939 -2.0088
19 14 11.3163 8.8685 -4.1804
20 1 10.4622 8.7947 -5.3928
21 1 11.8177 10.2561 -4.0117
22 1 12.4667 7.9410 -4.3281
23 6 8.0176 7.3050 -1.3402
24 6 7.0279 6.8711 -0.4882
25 7 4.6632 4.5487 -0.5845
26 7 3.9852 3.5105 -0.9270
27 1 -0.3633 -1.0276 -0.0005
28 1 -0.3633 0.5138 0.8899
29 1 -0.3633 0.5138 -0.8901
30 1 1.6886 1.8463 0.8900
31 1 1.6887 1.8463 -0.8900
32 1 5.0740 0.3393 -1.2480
33 1 3.5440 -0.5707 -1.2483
34 1 3.6661 0.9659 -2.1385
35 1 3.7037 0.9006 1.9987
36 1 5.3297 2.5885 1.8338
37 1 5.5479 6.1417 1.5573
38 1 6.5821 4.7983 2.0996
39 1 8.5762 4.1883 0.8730
40 1 10.3622 4.9260 -0.6433
41 1 9.6939 10.2220 -2.2886
42 1 7.8591 8.1788 -1.9547
43 1 6.0908 7.4054 -0.4356
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000881296890.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:41:50
Heat of formation + Delta-G solvation = 16.302786 kcal
Electronic energy + Delta-G solvation = -25701.502467 eV
Core-core repulsion = 21941.749345 eV
Total energy + Delta-G solvation = -3759.753122 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 317.153 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-42.99712 -38.90264 -37.83966 -36.82010 -34.85462 -33.52313 -32.14214 -30.61525
-29.85942 -29.44568 -27.59297 -27.40591 -25.81698 -24.45281 -23.00944 -21.78844
-21.19384 -20.58475 -19.79037 -17.85015 -17.46810 -16.76629 -16.33030 -16.19121
-16.01300 -15.46558 -15.18016 -14.58400 -14.34831 -14.01960 -13.93464 -13.85833
-13.63863 -12.71128 -12.51750 -12.43047 -12.28097 -12.12259 -11.93944 -11.78947
-11.75848 -11.59544 -11.33403 -11.18548 -11.01870 -10.82786 -10.64885 -10.60084
-10.28912 -9.95981 -9.87005 -9.64594 -9.48293 -9.29819 -8.98423 -7.64184
-7.55900 -6.94270 -4.54156 1.88861 2.30031 2.67893 2.86205 2.94730
2.99961 3.02562 3.22790 3.52175 3.81113 4.05066 4.43370 4.48666
4.70859 4.80161 4.92637 5.00256 5.11606 5.13594 5.28704 5.36006
5.41255 5.42922 5.55167 5.64029 5.68918 5.86974 5.90518 6.02214
6.10880 6.20936 6.26949 6.33497 6.80069 6.89944 6.90293 6.92322
7.09460 7.17133 7.43486 7.46892 7.63325 7.89081 7.89188 8.11607
8.47014 8.71231 8.78852 8.83782 9.99407
Molecular weight = 317.15amu
Principal moments of inertia in cm(-1)
A = 0.026670 B = 0.002468 C = 0.002427
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1049.628677 B =11344.151782 C =11534.288923
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 O -0.379 6.379
3 C 0.044 3.956
4 C 0.233 3.767
5 C -0.129 4.129
6 O -0.541 6.541
7 C -0.068 4.068
8 C -0.045 4.045
9 N -0.267 5.267
10 C 0.174 3.826
11 C -0.259 4.259
12 C -0.064 4.064
13 C -0.231 4.231
14 C 0.121 3.879
15 C -0.453 4.453
16 H 0.081 0.919
17 C 0.075 3.925
18 N -0.782 5.782
19 Si 0.912 3.088
20 H -0.265 1.265
21 H -0.276 1.276
22 H -0.261 1.261
23 C -0.170 4.170
24 C -0.061 4.061
25 N -0.060 5.060
26 N -0.274 5.274
27 H 0.086 0.914
28 H 0.039 0.961
29 H 0.041 0.959
30 H 0.049 0.951
31 H 0.068 0.932
32 H 0.062 0.938
33 H 0.073 0.927
34 H 0.075 0.925
35 H 0.373 0.627
36 H 0.185 0.815
37 H 0.092 0.908
38 H 0.096 0.904
39 H 0.086 0.914
40 H 0.094 0.906
41 H 0.284 0.716
42 H 0.120 0.880
43 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.091 -10.458 6.819 17.380
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 O -0.297 6.297
3 C -0.033 4.033
4 C 0.190 3.810
5 C -0.186 4.186
6 O -0.345 6.345
7 C -0.207 4.207
8 C -0.197 4.197
9 N -0.060 5.060
10 C 0.057 3.943
11 C -0.261 4.261
12 C -0.083 4.083
13 C -0.251 4.251
14 C 0.119 3.881
15 C -0.481 4.481
16 H 0.099 0.901
17 C -0.145 4.145
18 N -0.406 5.406
19 Si 0.736 3.264
20 H -0.190 1.190
21 H -0.201 1.201
22 H -0.185 1.185
23 C -0.190 4.190
24 C -0.080 4.080
25 N -0.040 5.040
26 N -0.141 5.141
27 H 0.104 0.896
28 H 0.057 0.943
29 H 0.060 0.940
30 H 0.067 0.933
31 H 0.086 0.914
32 H 0.081 0.919
33 H 0.092 0.908
34 H 0.094 0.906
35 H 0.221 0.779
36 H 0.202 0.798
37 H 0.110 0.890
38 H 0.115 0.885
39 H 0.104 0.896
40 H 0.112 0.888
41 H 0.095 0.905
42 H 0.138 0.862
43 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges -12.016 -9.714 5.299 16.335
hybrid contribution 0.405 0.397 0.821 0.997
sum -11.612 -9.317 6.120 16.096
Atomic orbital electron populations
1.22752 0.81257 1.02657 0.99944 1.87912 1.19308 1.27126 1.95403
1.23166 0.93687 0.85003 1.01480 1.19007 0.89466 0.84660 0.87893
1.21644 1.02100 1.00617 0.94236 1.86633 1.81209 1.51447 1.15244
1.22299 1.04600 0.98488 0.95316 1.23220 1.04605 0.87794 1.04094
1.48250 1.30877 1.11279 1.15635 1.20894 0.89739 0.90443 0.93262
1.18674 0.95315 1.03072 1.09060 1.20334 0.93403 0.96831 0.97755
1.20929 0.98748 1.02945 1.02430 1.17707 0.91846 0.89848 0.88747
1.19723 1.10463 0.94268 1.23665 0.90088 1.25993 0.95153 0.96397
0.96910 1.69811 1.33837 1.02662 1.34328 0.86247 0.80381 0.78370
0.81446 1.19022 1.20126 1.18452 1.21298 0.92946 1.02757 1.01956
1.20477 0.97255 0.94745 0.95562 1.78350 1.06956 1.19705 0.98990
1.75017 1.18231 0.97515 1.23343 0.89590 0.94283 0.94044 0.93258
0.91410 0.91856 0.90765 0.90571 0.77950 0.79814 0.88999 0.88549
0.89561 0.88754 0.90508 0.86215 0.89137
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.24 11.01 101.05 1.11 1.36 16
2 O -0.38 -4.31 9.92 -44.84 -0.44 -4.75 16
3 C 0.04 0.50 5.01 37.16 0.19 0.69 16
4 C 0.23 2.92 1.15 -91.77 -0.11 2.82 16
5 C -0.13 -1.66 8.68 37.16 0.32 -1.34 16
6 O -0.54 -6.18 12.37 -44.84 -0.55 -6.74 16
7 C -0.07 -1.00 5.71 -82.78 -0.47 -1.47 16
8 C -0.05 -0.62 10.75 -17.05 -0.18 -0.80 16
9 N -0.27 -4.37 3.43 -62.44 -0.21 -4.59 16
10 C 0.17 2.68 6.57 -5.19 -0.03 2.64 16
11 C -0.26 -5.22 5.27 -104.33 -0.55 -5.77 16
12 C -0.06 -1.36 9.67 -39.66 -0.38 -1.74 16
13 C -0.23 -5.48 9.80 -38.87 -0.38 -5.86 16
14 C 0.12 3.15 5.58 -106.82 -0.60 2.55 16
15 C -0.45 -11.64 9.05 -37.74 -0.34 -11.99 16
16 H 0.08 2.01 7.91 -52.49 -0.42 1.59 16
17 C 0.08 1.82 5.14 -17.34 -0.09 1.73 16
18 N -0.78 -19.42 10.95 55.55 0.61 -18.81 16
19 Si 0.91 18.09 29.60 -169.99 -5.03 13.06 16
20 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16
21 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16
22 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16
23 C -0.17 -4.30 8.70 -38.87 -0.34 -4.64 16
24 C -0.06 -1.37 9.67 -39.66 -0.38 -1.76 16
25 N -0.06 -1.15 12.92 60.35 0.78 -0.37 16
26 N -0.27 -4.93 12.41 33.29 0.41 -4.52 16
27 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16
28 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16
29 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16
30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16
31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16
32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16
33 H 0.07 0.91 7.68 -51.93 -0.40 0.51 16
34 H 0.08 0.99 8.14 -51.92 -0.42 0.57 16
35 H 0.37 2.81 8.70 45.56 0.40 3.21 16
36 H 0.18 1.80 7.83 -52.49 -0.41 1.39 16
37 H 0.09 1.28 8.08 -51.93 -0.42 0.86 16
38 H 0.10 1.17 8.01 -51.93 -0.42 0.75 16
39 H 0.09 1.58 8.06 -52.48 -0.42 1.15 16
40 H 0.09 2.12 8.06 -52.49 -0.42 1.69 16
41 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16
42 H 0.12 3.14 6.15 -52.49 -0.32 2.81 16
43 H 0.09 1.88 8.06 -52.48 -0.42 1.45 16
LS Contribution 368.50 15.07 5.55 5.55
Total: -1.00 -29.98 368.50 -6.48 -36.46
By element:
Atomic # 1 Polarization: 13.65 SS G_CDS: -5.35 Total: 8.30 kcal
Atomic # 6 Polarization: -21.35 SS G_CDS: -2.24 Total: -23.58 kcal
Atomic # 7 Polarization: -29.88 SS G_CDS: 1.59 Total: -28.29 kcal
Atomic # 8 Polarization: -10.49 SS G_CDS: -1.00 Total: -11.49 kcal
Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.06 kcal
Total LS contribution 5.55 Total: 5.55 kcal
Total: -29.98 -6.48 -36.46 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000881296890.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 52.759 kcal
(2) G-P(sol) polarization free energy of solvation -29.981 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.779 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.476 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.456 kcal
(6) G-S(sol) free energy of system = (1) + (5) 16.303 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds