Wall clock time and date at job start Tue Mar 31 2020 12:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00256 * 2 1 4 4 C 1.53001 * 109.47014 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47172 * 60.00054 * 4 3 2 6 6 O 1.42899 * 109.47539 * 300.00004 * 4 3 2 7 7 C 1.50706 * 109.46673 * 180.02562 * 4 3 2 8 8 C 1.35348 * 126.74901 * 120.24575 * 7 4 3 9 9 N 1.35311 * 106.17494 * 180.12100 * 8 7 4 10 10 C 1.46503 * 125.87141 * 179.90649 * 9 8 7 11 11 C 1.50696 * 109.47063 * 124.71936 * 10 9 8 12 12 C 1.38636 * 119.74948 * 269.72474 * 11 10 9 13 13 C 1.37617 * 120.25050 * 179.72057 * 12 11 10 14 14 C 1.40719 * 119.74175 * 0.58100 * 13 12 11 15 15 C 1.41392 * 120.24273 * 179.68205 * 14 13 12 16 16 H 1.07999 * 120.00170 * 24.40487 * 15 14 13 17 17 C 1.39955 * 119.99836 * 204.40553 * 15 14 13 18 18 N 1.30816 * 119.99751 * 17.85321 * 17 15 14 19 19 Si 1.86797 * 119.99894 * 197.85530 * 17 15 14 20 20 H 1.48490 * 109.47161 * 90.00114 * 19 17 15 21 21 H 1.48500 * 109.46785 * 210.00237 * 19 17 15 22 22 H 1.48502 * 109.47156 * 330.00043 * 19 17 15 23 23 C 1.40718 * 119.51171 * 359.69510 * 14 13 12 24 24 C 1.37614 * 119.74273 * 0.02562 * 23 14 13 25 25 N 1.28715 * 108.26207 * 359.64805 * 9 8 7 26 26 N 1.28640 * 110.18058 * 0.21916 * 25 9 8 27 27 H 1.08999 * 109.47110 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47201 * 300.00049 * 1 2 3 29 29 H 1.09007 * 109.46985 * 60.00534 * 1 2 3 30 30 H 1.08997 * 109.46775 * 59.99827 * 3 2 1 31 31 H 1.08995 * 109.46638 * 299.99779 * 3 2 1 32 32 H 1.08992 * 109.47175 * 179.97438 * 5 4 3 33 33 H 1.08998 * 109.47249 * 299.99988 * 5 4 3 34 34 H 1.09009 * 109.46909 * 59.99795 * 5 4 3 35 35 H 0.96702 * 113.99468 * 300.00727 * 6 4 3 36 36 H 1.08001 * 126.91586 * 0.02562 * 8 7 4 37 37 H 1.09001 * 109.46813 * 244.71975 * 10 9 8 38 38 H 1.09004 * 109.46672 * 4.71621 * 10 9 8 39 39 H 1.08003 * 119.87688 * 359.97438 * 12 11 10 40 40 H 1.08001 * 120.13088 * 180.27703 * 13 12 11 41 41 H 0.97004 * 120.00349 * 180.02562 * 18 17 15 42 42 H 1.07993 * 120.12809 * 179.97438 * 23 14 13 43 43 H 1.08003 * 119.87704 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 3.9874 0.4250 -1.2483 6 8 3.9567 0.4756 1.1677 7 6 4.1484 2.5613 0.0013 8 6 4.9764 3.0787 0.9387 9 7 5.2709 4.3345 0.5297 10 6 6.1374 5.2848 1.2314 11 6 7.2288 5.7500 0.3022 12 6 8.4285 5.0573 0.2489 13 6 9.4300 5.4697 -0.6000 14 6 9.2373 6.6064 -1.4069 15 6 10.2617 7.0434 -2.2780 16 1 11.0044 6.3438 -2.6321 17 6 10.3131 8.3825 -2.6815 18 7 9.6586 9.2939 -2.0088 19 14 11.3163 8.8685 -4.1804 20 1 10.4622 8.7947 -5.3928 21 1 11.8177 10.2561 -4.0117 22 1 12.4667 7.9410 -4.3281 23 6 8.0176 7.3050 -1.3402 24 6 7.0279 6.8711 -0.4882 25 7 4.6632 4.5487 -0.5845 26 7 3.9852 3.5105 -0.9270 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.6886 1.8463 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 5.0740 0.3393 -1.2480 33 1 3.5440 -0.5707 -1.2483 34 1 3.6661 0.9659 -2.1385 35 1 3.7037 0.9006 1.9987 36 1 5.3297 2.5885 1.8338 37 1 5.5479 6.1417 1.5573 38 1 6.5821 4.7983 2.0996 39 1 8.5762 4.1883 0.8730 40 1 10.3622 4.9260 -0.6433 41 1 9.6939 10.2220 -2.2886 42 1 7.8591 8.1788 -1.9547 43 1 6.0908 7.4054 -0.4356 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881296890.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:50 Heat of formation + Delta-G solvation = 16.302786 kcal Electronic energy + Delta-G solvation = -25701.502467 eV Core-core repulsion = 21941.749345 eV Total energy + Delta-G solvation = -3759.753122 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.99712 -38.90264 -37.83966 -36.82010 -34.85462 -33.52313 -32.14214 -30.61525 -29.85942 -29.44568 -27.59297 -27.40591 -25.81698 -24.45281 -23.00944 -21.78844 -21.19384 -20.58475 -19.79037 -17.85015 -17.46810 -16.76629 -16.33030 -16.19121 -16.01300 -15.46558 -15.18016 -14.58400 -14.34831 -14.01960 -13.93464 -13.85833 -13.63863 -12.71128 -12.51750 -12.43047 -12.28097 -12.12259 -11.93944 -11.78947 -11.75848 -11.59544 -11.33403 -11.18548 -11.01870 -10.82786 -10.64885 -10.60084 -10.28912 -9.95981 -9.87005 -9.64594 -9.48293 -9.29819 -8.98423 -7.64184 -7.55900 -6.94270 -4.54156 1.88861 2.30031 2.67893 2.86205 2.94730 2.99961 3.02562 3.22790 3.52175 3.81113 4.05066 4.43370 4.48666 4.70859 4.80161 4.92637 5.00256 5.11606 5.13594 5.28704 5.36006 5.41255 5.42922 5.55167 5.64029 5.68918 5.86974 5.90518 6.02214 6.10880 6.20936 6.26949 6.33497 6.80069 6.89944 6.90293 6.92322 7.09460 7.17133 7.43486 7.46892 7.63325 7.89081 7.89188 8.11607 8.47014 8.71231 8.78852 8.83782 9.99407 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.026670 B = 0.002468 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.628677 B =11344.151782 C =11534.288923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.379 6.379 3 C 0.044 3.956 4 C 0.233 3.767 5 C -0.129 4.129 6 O -0.541 6.541 7 C -0.068 4.068 8 C -0.045 4.045 9 N -0.267 5.267 10 C 0.174 3.826 11 C -0.259 4.259 12 C -0.064 4.064 13 C -0.231 4.231 14 C 0.121 3.879 15 C -0.453 4.453 16 H 0.081 0.919 17 C 0.075 3.925 18 N -0.782 5.782 19 Si 0.912 3.088 20 H -0.265 1.265 21 H -0.276 1.276 22 H -0.261 1.261 23 C -0.170 4.170 24 C -0.061 4.061 25 N -0.060 5.060 26 N -0.274 5.274 27 H 0.086 0.914 28 H 0.039 0.961 29 H 0.041 0.959 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.373 0.627 36 H 0.185 0.815 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.284 0.716 42 H 0.120 0.880 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.091 -10.458 6.819 17.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.297 6.297 3 C -0.033 4.033 4 C 0.190 3.810 5 C -0.186 4.186 6 O -0.345 6.345 7 C -0.207 4.207 8 C -0.197 4.197 9 N -0.060 5.060 10 C 0.057 3.943 11 C -0.261 4.261 12 C -0.083 4.083 13 C -0.251 4.251 14 C 0.119 3.881 15 C -0.481 4.481 16 H 0.099 0.901 17 C -0.145 4.145 18 N -0.406 5.406 19 Si 0.736 3.264 20 H -0.190 1.190 21 H -0.201 1.201 22 H -0.185 1.185 23 C -0.190 4.190 24 C -0.080 4.080 25 N -0.040 5.040 26 N -0.141 5.141 27 H 0.104 0.896 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.221 0.779 36 H 0.202 0.798 37 H 0.110 0.890 38 H 0.115 0.885 39 H 0.104 0.896 40 H 0.112 0.888 41 H 0.095 0.905 42 H 0.138 0.862 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.016 -9.714 5.299 16.335 hybrid contribution 0.405 0.397 0.821 0.997 sum -11.612 -9.317 6.120 16.096 Atomic orbital electron populations 1.22752 0.81257 1.02657 0.99944 1.87912 1.19308 1.27126 1.95403 1.23166 0.93687 0.85003 1.01480 1.19007 0.89466 0.84660 0.87893 1.21644 1.02100 1.00617 0.94236 1.86633 1.81209 1.51447 1.15244 1.22299 1.04600 0.98488 0.95316 1.23220 1.04605 0.87794 1.04094 1.48250 1.30877 1.11279 1.15635 1.20894 0.89739 0.90443 0.93262 1.18674 0.95315 1.03072 1.09060 1.20334 0.93403 0.96831 0.97755 1.20929 0.98748 1.02945 1.02430 1.17707 0.91846 0.89848 0.88747 1.19723 1.10463 0.94268 1.23665 0.90088 1.25993 0.95153 0.96397 0.96910 1.69811 1.33837 1.02662 1.34328 0.86247 0.80381 0.78370 0.81446 1.19022 1.20126 1.18452 1.21298 0.92946 1.02757 1.01956 1.20477 0.97255 0.94745 0.95562 1.78350 1.06956 1.19705 0.98990 1.75017 1.18231 0.97515 1.23343 0.89590 0.94283 0.94044 0.93258 0.91410 0.91856 0.90765 0.90571 0.77950 0.79814 0.88999 0.88549 0.89561 0.88754 0.90508 0.86215 0.89137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.36 16 2 O -0.38 -4.31 9.92 -44.84 -0.44 -4.75 16 3 C 0.04 0.50 5.01 37.16 0.19 0.69 16 4 C 0.23 2.92 1.15 -91.77 -0.11 2.82 16 5 C -0.13 -1.66 8.68 37.16 0.32 -1.34 16 6 O -0.54 -6.18 12.37 -44.84 -0.55 -6.74 16 7 C -0.07 -1.00 5.71 -82.78 -0.47 -1.47 16 8 C -0.05 -0.62 10.75 -17.05 -0.18 -0.80 16 9 N -0.27 -4.37 3.43 -62.44 -0.21 -4.59 16 10 C 0.17 2.68 6.57 -5.19 -0.03 2.64 16 11 C -0.26 -5.22 5.27 -104.33 -0.55 -5.77 16 12 C -0.06 -1.36 9.67 -39.66 -0.38 -1.74 16 13 C -0.23 -5.48 9.80 -38.87 -0.38 -5.86 16 14 C 0.12 3.15 5.58 -106.82 -0.60 2.55 16 15 C -0.45 -11.64 9.05 -37.74 -0.34 -11.99 16 16 H 0.08 2.01 7.91 -52.49 -0.42 1.59 16 17 C 0.08 1.82 5.14 -17.34 -0.09 1.73 16 18 N -0.78 -19.42 10.95 55.55 0.61 -18.81 16 19 Si 0.91 18.09 29.60 -169.99 -5.03 13.06 16 20 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 21 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 22 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 23 C -0.17 -4.30 8.70 -38.87 -0.34 -4.64 16 24 C -0.06 -1.37 9.67 -39.66 -0.38 -1.76 16 25 N -0.06 -1.15 12.92 60.35 0.78 -0.37 16 26 N -0.27 -4.93 12.41 33.29 0.41 -4.52 16 27 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.91 7.68 -51.93 -0.40 0.51 16 34 H 0.08 0.99 8.14 -51.92 -0.42 0.57 16 35 H 0.37 2.81 8.70 45.56 0.40 3.21 16 36 H 0.18 1.80 7.83 -52.49 -0.41 1.39 16 37 H 0.09 1.28 8.08 -51.93 -0.42 0.86 16 38 H 0.10 1.17 8.01 -51.93 -0.42 0.75 16 39 H 0.09 1.58 8.06 -52.48 -0.42 1.15 16 40 H 0.09 2.12 8.06 -52.49 -0.42 1.69 16 41 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 42 H 0.12 3.14 6.15 -52.49 -0.32 2.81 16 43 H 0.09 1.88 8.06 -52.48 -0.42 1.45 16 LS Contribution 368.50 15.07 5.55 5.55 Total: -1.00 -29.98 368.50 -6.48 -36.46 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -5.35 Total: 8.30 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: -2.24 Total: -23.58 kcal Atomic # 7 Polarization: -29.88 SS G_CDS: 1.59 Total: -28.29 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: -1.00 Total: -11.49 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.06 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.98 -6.48 -36.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881296890.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.759 kcal (2) G-P(sol) polarization free energy of solvation -29.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds