Wall clock time and date at job start Tue Mar 31 2020 12:41:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42897 * 1
3 3 C 1.42901 * 114.00256 * 2 1
4 4 C 1.53001 * 109.47014 * 179.97438 * 3 2 1
5 5 C 1.52999 * 109.47172 * 60.00054 * 4 3 2
6 6 O 1.42899 * 109.47539 * 300.00004 * 4 3 2
7 7 C 1.50706 * 109.46673 * 180.02562 * 4 3 2
8 8 C 1.35348 * 126.74901 * 120.24575 * 7 4 3
9 9 N 1.35311 * 106.17494 * 180.12100 * 8 7 4
10 10 C 1.46503 * 125.87141 * 179.90649 * 9 8 7
11 11 C 1.50696 * 109.47063 * 124.71936 * 10 9 8
12 12 C 1.38636 * 119.74948 * 269.72474 * 11 10 9
13 13 C 1.37617 * 120.25050 * 179.72057 * 12 11 10
14 14 C 1.40719 * 119.74175 * 0.58100 * 13 12 11
15 15 C 1.41392 * 120.24273 * 179.68205 * 14 13 12
16 16 H 1.07999 * 120.00170 * 24.40487 * 15 14 13
17 17 C 1.39955 * 119.99836 * 204.40553 * 15 14 13
18 18 N 1.30816 * 119.99751 * 17.85321 * 17 15 14
19 19 Si 1.86797 * 119.99894 * 197.85530 * 17 15 14
20 20 H 1.48490 * 109.47161 * 90.00114 * 19 17 15
21 21 H 1.48500 * 109.46785 * 210.00237 * 19 17 15
22 22 H 1.48502 * 109.47156 * 330.00043 * 19 17 15
23 23 C 1.40718 * 119.51171 * 359.69510 * 14 13 12
24 24 C 1.37614 * 119.74273 * 0.02562 * 23 14 13
25 25 N 1.28715 * 108.26207 * 359.64805 * 9 8 7
26 26 N 1.28640 * 110.18058 * 0.21916 * 25 9 8
27 27 H 1.08999 * 109.47110 * 179.97438 * 1 2 3
28 28 H 1.08997 * 109.47201 * 300.00049 * 1 2 3
29 29 H 1.09007 * 109.46985 * 60.00534 * 1 2 3
30 30 H 1.08997 * 109.46775 * 59.99827 * 3 2 1
31 31 H 1.08995 * 109.46638 * 299.99779 * 3 2 1
32 32 H 1.08992 * 109.47175 * 179.97438 * 5 4 3
33 33 H 1.08998 * 109.47249 * 299.99988 * 5 4 3
34 34 H 1.09009 * 109.46909 * 59.99795 * 5 4 3
35 35 H 0.96702 * 113.99468 * 300.00727 * 6 4 3
36 36 H 1.08001 * 126.91586 * 0.02562 * 8 7 4
37 37 H 1.09001 * 109.46813 * 244.71975 * 10 9 8
38 38 H 1.09004 * 109.46672 * 4.71621 * 10 9 8
39 39 H 1.08003 * 119.87688 * 359.97438 * 12 11 10
40 40 H 1.08001 * 120.13088 * 180.27703 * 13 12 11
41 41 H 0.97004 * 120.00349 * 180.02562 * 18 17 15
42 42 H 1.07993 * 120.12809 * 179.97438 * 23 14 13
43 43 H 1.08003 * 119.87704 * 180.02562 * 24 23 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 6 3.5355 1.1845 0.0006
5 6 3.9874 0.4250 -1.2483
6 8 3.9567 0.4756 1.1677
7 6 4.1484 2.5613 0.0013
8 6 4.9764 3.0787 0.9387
9 7 5.2709 4.3345 0.5297
10 6 6.1374 5.2848 1.2314
11 6 7.2288 5.7500 0.3022
12 6 8.4285 5.0573 0.2489
13 6 9.4300 5.4697 -0.6000
14 6 9.2373 6.6064 -1.4069
15 6 10.2617 7.0434 -2.2780
16 1 11.0044 6.3438 -2.6321
17 6 10.3131 8.3825 -2.6815
18 7 9.6586 9.2939 -2.0088
19 14 11.3163 8.8685 -4.1804
20 1 10.4622 8.7947 -5.3928
21 1 11.8177 10.2561 -4.0117
22 1 12.4667 7.9410 -4.3281
23 6 8.0176 7.3050 -1.3402
24 6 7.0279 6.8711 -0.4882
25 7 4.6632 4.5487 -0.5845
26 7 3.9852 3.5105 -0.9270
27 1 -0.3633 -1.0276 -0.0005
28 1 -0.3633 0.5138 0.8899
29 1 -0.3633 0.5138 -0.8901
30 1 1.6886 1.8463 0.8900
31 1 1.6887 1.8463 -0.8900
32 1 5.0740 0.3393 -1.2480
33 1 3.5440 -0.5707 -1.2483
34 1 3.6661 0.9659 -2.1385
35 1 3.7037 0.9006 1.9987
36 1 5.3297 2.5885 1.8338
37 1 5.5479 6.1417 1.5573
38 1 6.5821 4.7983 2.0996
39 1 8.5762 4.1883 0.8730
40 1 10.3622 4.9260 -0.6433
41 1 9.6939 10.2220 -2.2886
42 1 7.8591 8.1788 -1.9547
43 1 6.0908 7.4054 -0.4356
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000881296890.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:41:49
Heat of formation + Delta-G solvation = -3.759730 kcal
Electronic energy + Delta-G solvation = -25702.372443 eV
Core-core repulsion = 21941.749345 eV
Total energy + Delta-G solvation = -3760.623098 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 317.153 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-44.21097 -39.83711 -39.50931 -37.67289 -36.35768 -35.08325 -33.18664 -32.16986
-31.23239 -31.03897 -28.95840 -28.38445 -26.61880 -26.09111 -24.12589 -23.10799
-22.93613 -22.02877 -21.04676 -19.30063 -18.88077 -17.81137 -17.44981 -17.19858
-17.14142 -16.87383 -16.21265 -15.88102 -15.62633 -15.56995 -15.51823 -14.88522
-14.49623 -14.37497 -13.89395 -13.76850 -13.46822 -13.37452 -13.22403 -13.09375
-12.97892 -12.79899 -12.72433 -12.55508 -12.46399 -12.23854 -11.92540 -11.87054
-11.61591 -11.37373 -11.21556 -11.08364 -10.89187 -10.64535 -10.14695 -9.44784
-9.36494 -8.72783 -6.43432 0.62840 0.82228 1.10070 1.34090 1.39886
1.47751 1.48148 1.80432 2.15654 2.65314 2.71045 3.12398 3.48428
3.66041 3.76034 3.89588 3.93311 3.98691 4.09420 4.26528 4.39668
4.43453 4.44160 4.52548 4.53668 4.58795 4.67230 4.80656 4.86728
4.88400 4.98034 5.00990 5.07843 5.13861 5.28862 5.30020 5.36743
5.62371 5.73863 5.84599 6.03245 6.09811 6.16665 6.30174 6.62737
6.78633 6.85542 6.94587 7.60229 8.23759
Molecular weight = 317.15amu
Principal moments of inertia in cm(-1)
A = 0.026670 B = 0.002468 C = 0.002427
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1049.628677 B =11344.151782 C =11534.288923
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.024 3.976
2 O -0.396 6.396
3 C 0.050 3.950
4 C 0.238 3.762
5 C -0.128 4.128
6 O -0.545 6.545
7 C -0.072 4.072
8 C -0.026 4.026
9 N -0.271 5.271
10 C 0.176 3.824
11 C -0.241 4.241
12 C -0.065 4.065
13 C -0.251 4.251
14 C 0.088 3.912
15 C -0.496 4.496
16 H 0.076 0.924
17 C 0.035 3.965
18 N -0.816 5.816
19 Si 0.982 3.018
20 H -0.265 1.265
21 H -0.264 1.264
22 H -0.257 1.257
23 C -0.199 4.199
24 C -0.068 4.068
25 N -0.112 5.112
26 N -0.297 5.297
27 H 0.101 0.899
28 H 0.051 0.949
29 H 0.044 0.956
30 H 0.063 0.937
31 H 0.056 0.944
32 H 0.053 0.947
33 H 0.079 0.921
34 H 0.066 0.934
35 H 0.392 0.608
36 H 0.231 0.769
37 H 0.109 0.891
38 H 0.143 0.857
39 H 0.125 0.875
40 H 0.097 0.903
41 H 0.290 0.710
42 H 0.098 0.902
43 H 0.102 0.898
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.028 -12.162 8.998 19.966
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.072 4.072
2 O -0.315 6.315
3 C -0.027 4.027
4 C 0.195 3.805
5 C -0.186 4.186
6 O -0.352 6.352
7 C -0.213 4.213
8 C -0.178 4.178
9 N -0.064 5.064
10 C 0.058 3.942
11 C -0.243 4.243
12 C -0.083 4.083
13 C -0.271 4.271
14 C 0.085 3.915
15 C -0.524 4.524
16 H 0.094 0.906
17 C -0.181 4.181
18 N -0.441 5.441
19 Si 0.802 3.198
20 H -0.189 1.189
21 H -0.188 1.188
22 H -0.181 1.181
23 C -0.218 4.218
24 C -0.087 4.087
25 N -0.091 5.091
26 N -0.164 5.164
27 H 0.119 0.881
28 H 0.069 0.931
29 H 0.062 0.938
30 H 0.081 0.919
31 H 0.074 0.926
32 H 0.072 0.928
33 H 0.098 0.902
34 H 0.085 0.915
35 H 0.242 0.758
36 H 0.248 0.752
37 H 0.127 0.873
38 H 0.161 0.839
39 H 0.143 0.857
40 H 0.116 0.884
41 H 0.101 0.899
42 H 0.116 0.884
43 H 0.120 0.880
Dipole moment (debyes) X Y Z Total
from point charges -12.970 -11.412 7.492 18.830
hybrid contribution 0.503 0.739 0.316 0.948
sum -12.468 -10.673 7.808 18.175
Atomic orbital electron populations
1.22953 0.79610 1.03957 1.00682 1.87877 1.21132 1.27014 1.95524
1.23035 0.92921 0.85192 1.01578 1.18892 0.90099 0.83398 0.88154
1.21613 1.01435 1.00962 0.94566 1.86609 1.81260 1.51493 1.15816
1.22722 1.04826 0.98835 0.94880 1.23920 1.02874 0.86301 1.04735
1.48105 1.30779 1.12253 1.15243 1.21055 0.88452 0.91858 0.92823
1.19127 0.96416 1.01082 1.07662 1.20740 0.92766 0.97698 0.97125
1.21166 1.00018 1.02766 1.03139 1.18042 0.92303 0.91200 0.89917
1.19919 1.11386 0.95314 1.25830 0.90604 1.26791 0.96171 0.95829
0.99299 1.69856 1.35333 1.03133 1.35775 0.85202 0.78731 0.78418
0.77408 1.18943 1.18823 1.18095 1.21257 0.94079 1.02989 1.03502
1.20727 0.96915 0.95775 0.95285 1.78351 1.09033 1.20854 1.00867
1.74962 1.18568 0.98223 1.24615 0.88090 0.93087 0.93759 0.91873
0.92626 0.92800 0.90208 0.91468 0.75789 0.75237 0.87312 0.83867
0.85709 0.88434 0.89881 0.88405 0.87994
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.33 11.01 113.37 1.25 1.58 16
2 O -0.40 -8.18 9.92 -139.79 -1.39 -9.56 16
3 C 0.05 1.04 5.01 71.98 0.36 1.40 16
4 C 0.24 5.41 1.15 -11.54 -0.01 5.40 16
5 C -0.13 -3.18 8.68 71.98 0.62 -2.55 16
6 O -0.55 -10.45 12.37 -139.79 -1.73 -12.18 16
7 C -0.07 -1.95 5.71 41.60 0.24 -1.72 16
8 C -0.03 -0.61 10.75 83.49 0.90 0.29 16
9 N -0.27 -7.96 3.43 -351.46 -1.21 -9.16 16
10 C 0.18 4.65 6.57 85.63 0.56 5.22 16
11 C -0.24 -9.21 5.27 -19.68 -0.10 -9.31 16
12 C -0.06 -2.60 9.67 22.22 0.21 -2.38 16
13 C -0.25 -12.06 9.80 22.73 0.22 -11.83 16
14 C 0.09 4.75 5.58 -21.29 -0.12 4.63 16
15 C -0.50 -26.84 9.05 23.46 0.21 -26.63 16
16 H 0.08 3.98 7.91 -2.91 -0.02 3.96 16
17 C 0.04 1.78 5.14 85.26 0.44 2.21 16
18 N -0.82 -42.36 10.95 21.83 0.24 -42.12 16
19 Si 0.98 38.26 29.60 68.60 2.03 40.29 16
20 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16
21 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16
22 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16
23 C -0.20 -10.49 8.70 22.73 0.20 -10.29 16
24 C -0.07 -3.07 9.67 22.22 0.21 -2.85 16
25 N -0.11 -4.16 12.92 37.02 0.48 -3.68 16
26 N -0.30 -10.39 12.41 -48.60 -0.60 -10.99 16
27 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16
28 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16
29 H 0.04 0.58 8.14 -2.38 -0.02 0.56 16
30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16
31 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16
32 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16
33 H 0.08 1.85 7.68 -2.39 -0.02 1.84 16
34 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16
35 H 0.39 4.09 8.70 -74.06 -0.64 3.45 16
36 H 0.23 2.97 7.83 -2.91 -0.02 2.94 16
37 H 0.11 2.57 8.08 -2.39 -0.02 2.55 16
38 H 0.14 2.52 8.01 -2.39 -0.02 2.50 16
39 H 0.13 4.01 8.06 -2.91 -0.02 3.99 16
40 H 0.10 4.46 8.06 -2.91 -0.02 4.43 16
41 H 0.29 13.57 8.30 -92.70 -0.77 12.80 16
42 H 0.10 5.48 6.15 -2.91 -0.02 5.46 16
43 H 0.10 4.24 8.06 -2.91 -0.02 4.22 16
Total: -1.00 -69.31 368.50 3.40 -65.91
By element:
Atomic # 1 Polarization: 27.96 SS G_CDS: 0.38 Total: 28.34 kcal
Atomic # 6 Polarization: -52.03 SS G_CDS: 5.20 Total: -46.84 kcal
Atomic # 7 Polarization: -64.86 SS G_CDS: -1.09 Total: -65.96 kcal
Atomic # 8 Polarization: -18.62 SS G_CDS: -3.12 Total: -21.74 kcal
Atomic # 14 Polarization: 38.26 SS G_CDS: 2.03 Total: 40.29 kcal
Total: -69.31 3.40 -65.91 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000881296890.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 62.148 kcal
(2) G-P(sol) polarization free energy of solvation -69.307 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.159 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.400 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.908 kcal
(6) G-S(sol) free energy of system = (1) + (5) -3.760 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds