Wall clock time and date at job start Tue Mar 31 2020 12:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00256 * 2 1 4 4 C 1.53001 * 109.47014 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47172 * 60.00054 * 4 3 2 6 6 O 1.42899 * 109.47539 * 300.00004 * 4 3 2 7 7 C 1.50706 * 109.46673 * 180.02562 * 4 3 2 8 8 C 1.35348 * 126.74901 * 120.24575 * 7 4 3 9 9 N 1.35311 * 106.17494 * 180.12100 * 8 7 4 10 10 C 1.46503 * 125.87141 * 179.90649 * 9 8 7 11 11 C 1.50696 * 109.47063 * 124.71936 * 10 9 8 12 12 C 1.38636 * 119.74948 * 269.72474 * 11 10 9 13 13 C 1.37617 * 120.25050 * 179.72057 * 12 11 10 14 14 C 1.40719 * 119.74175 * 0.58100 * 13 12 11 15 15 C 1.41392 * 120.24273 * 179.68205 * 14 13 12 16 16 H 1.07999 * 120.00170 * 24.40487 * 15 14 13 17 17 C 1.39955 * 119.99836 * 204.40553 * 15 14 13 18 18 N 1.30816 * 119.99751 * 17.85321 * 17 15 14 19 19 Si 1.86797 * 119.99894 * 197.85530 * 17 15 14 20 20 H 1.48490 * 109.47161 * 90.00114 * 19 17 15 21 21 H 1.48500 * 109.46785 * 210.00237 * 19 17 15 22 22 H 1.48502 * 109.47156 * 330.00043 * 19 17 15 23 23 C 1.40718 * 119.51171 * 359.69510 * 14 13 12 24 24 C 1.37614 * 119.74273 * 0.02562 * 23 14 13 25 25 N 1.28715 * 108.26207 * 359.64805 * 9 8 7 26 26 N 1.28640 * 110.18058 * 0.21916 * 25 9 8 27 27 H 1.08999 * 109.47110 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47201 * 300.00049 * 1 2 3 29 29 H 1.09007 * 109.46985 * 60.00534 * 1 2 3 30 30 H 1.08997 * 109.46775 * 59.99827 * 3 2 1 31 31 H 1.08995 * 109.46638 * 299.99779 * 3 2 1 32 32 H 1.08992 * 109.47175 * 179.97438 * 5 4 3 33 33 H 1.08998 * 109.47249 * 299.99988 * 5 4 3 34 34 H 1.09009 * 109.46909 * 59.99795 * 5 4 3 35 35 H 0.96702 * 113.99468 * 300.00727 * 6 4 3 36 36 H 1.08001 * 126.91586 * 0.02562 * 8 7 4 37 37 H 1.09001 * 109.46813 * 244.71975 * 10 9 8 38 38 H 1.09004 * 109.46672 * 4.71621 * 10 9 8 39 39 H 1.08003 * 119.87688 * 359.97438 * 12 11 10 40 40 H 1.08001 * 120.13088 * 180.27703 * 13 12 11 41 41 H 0.97004 * 120.00349 * 180.02562 * 18 17 15 42 42 H 1.07993 * 120.12809 * 179.97438 * 23 14 13 43 43 H 1.08003 * 119.87704 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 3.9874 0.4250 -1.2483 6 8 3.9567 0.4756 1.1677 7 6 4.1484 2.5613 0.0013 8 6 4.9764 3.0787 0.9387 9 7 5.2709 4.3345 0.5297 10 6 6.1374 5.2848 1.2314 11 6 7.2288 5.7500 0.3022 12 6 8.4285 5.0573 0.2489 13 6 9.4300 5.4697 -0.6000 14 6 9.2373 6.6064 -1.4069 15 6 10.2617 7.0434 -2.2780 16 1 11.0044 6.3438 -2.6321 17 6 10.3131 8.3825 -2.6815 18 7 9.6586 9.2939 -2.0088 19 14 11.3163 8.8685 -4.1804 20 1 10.4622 8.7947 -5.3928 21 1 11.8177 10.2561 -4.0117 22 1 12.4667 7.9410 -4.3281 23 6 8.0176 7.3050 -1.3402 24 6 7.0279 6.8711 -0.4882 25 7 4.6632 4.5487 -0.5845 26 7 3.9852 3.5105 -0.9270 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.6886 1.8463 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 5.0740 0.3393 -1.2480 33 1 3.5440 -0.5707 -1.2483 34 1 3.6661 0.9659 -2.1385 35 1 3.7037 0.9006 1.9987 36 1 5.3297 2.5885 1.8338 37 1 5.5479 6.1417 1.5573 38 1 6.5821 4.7983 2.0996 39 1 8.5762 4.1883 0.8730 40 1 10.3622 4.9260 -0.6433 41 1 9.6939 10.2220 -2.2886 42 1 7.8591 8.1788 -1.9547 43 1 6.0908 7.4054 -0.4356 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881296890.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:49 Heat of formation + Delta-G solvation = -3.759730 kcal Electronic energy + Delta-G solvation = -25702.372443 eV Core-core repulsion = 21941.749345 eV Total energy + Delta-G solvation = -3760.623098 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.21097 -39.83711 -39.50931 -37.67289 -36.35768 -35.08325 -33.18664 -32.16986 -31.23239 -31.03897 -28.95840 -28.38445 -26.61880 -26.09111 -24.12589 -23.10799 -22.93613 -22.02877 -21.04676 -19.30063 -18.88077 -17.81137 -17.44981 -17.19858 -17.14142 -16.87383 -16.21265 -15.88102 -15.62633 -15.56995 -15.51823 -14.88522 -14.49623 -14.37497 -13.89395 -13.76850 -13.46822 -13.37452 -13.22403 -13.09375 -12.97892 -12.79899 -12.72433 -12.55508 -12.46399 -12.23854 -11.92540 -11.87054 -11.61591 -11.37373 -11.21556 -11.08364 -10.89187 -10.64535 -10.14695 -9.44784 -9.36494 -8.72783 -6.43432 0.62840 0.82228 1.10070 1.34090 1.39886 1.47751 1.48148 1.80432 2.15654 2.65314 2.71045 3.12398 3.48428 3.66041 3.76034 3.89588 3.93311 3.98691 4.09420 4.26528 4.39668 4.43453 4.44160 4.52548 4.53668 4.58795 4.67230 4.80656 4.86728 4.88400 4.98034 5.00990 5.07843 5.13861 5.28862 5.30020 5.36743 5.62371 5.73863 5.84599 6.03245 6.09811 6.16665 6.30174 6.62737 6.78633 6.85542 6.94587 7.60229 8.23759 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.026670 B = 0.002468 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.628677 B =11344.151782 C =11534.288923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.396 6.396 3 C 0.050 3.950 4 C 0.238 3.762 5 C -0.128 4.128 6 O -0.545 6.545 7 C -0.072 4.072 8 C -0.026 4.026 9 N -0.271 5.271 10 C 0.176 3.824 11 C -0.241 4.241 12 C -0.065 4.065 13 C -0.251 4.251 14 C 0.088 3.912 15 C -0.496 4.496 16 H 0.076 0.924 17 C 0.035 3.965 18 N -0.816 5.816 19 Si 0.982 3.018 20 H -0.265 1.265 21 H -0.264 1.264 22 H -0.257 1.257 23 C -0.199 4.199 24 C -0.068 4.068 25 N -0.112 5.112 26 N -0.297 5.297 27 H 0.101 0.899 28 H 0.051 0.949 29 H 0.044 0.956 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.392 0.608 36 H 0.231 0.769 37 H 0.109 0.891 38 H 0.143 0.857 39 H 0.125 0.875 40 H 0.097 0.903 41 H 0.290 0.710 42 H 0.098 0.902 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.028 -12.162 8.998 19.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.315 6.315 3 C -0.027 4.027 4 C 0.195 3.805 5 C -0.186 4.186 6 O -0.352 6.352 7 C -0.213 4.213 8 C -0.178 4.178 9 N -0.064 5.064 10 C 0.058 3.942 11 C -0.243 4.243 12 C -0.083 4.083 13 C -0.271 4.271 14 C 0.085 3.915 15 C -0.524 4.524 16 H 0.094 0.906 17 C -0.181 4.181 18 N -0.441 5.441 19 Si 0.802 3.198 20 H -0.189 1.189 21 H -0.188 1.188 22 H -0.181 1.181 23 C -0.218 4.218 24 C -0.087 4.087 25 N -0.091 5.091 26 N -0.164 5.164 27 H 0.119 0.881 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.242 0.758 36 H 0.248 0.752 37 H 0.127 0.873 38 H 0.161 0.839 39 H 0.143 0.857 40 H 0.116 0.884 41 H 0.101 0.899 42 H 0.116 0.884 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -12.970 -11.412 7.492 18.830 hybrid contribution 0.503 0.739 0.316 0.948 sum -12.468 -10.673 7.808 18.175 Atomic orbital electron populations 1.22953 0.79610 1.03957 1.00682 1.87877 1.21132 1.27014 1.95524 1.23035 0.92921 0.85192 1.01578 1.18892 0.90099 0.83398 0.88154 1.21613 1.01435 1.00962 0.94566 1.86609 1.81260 1.51493 1.15816 1.22722 1.04826 0.98835 0.94880 1.23920 1.02874 0.86301 1.04735 1.48105 1.30779 1.12253 1.15243 1.21055 0.88452 0.91858 0.92823 1.19127 0.96416 1.01082 1.07662 1.20740 0.92766 0.97698 0.97125 1.21166 1.00018 1.02766 1.03139 1.18042 0.92303 0.91200 0.89917 1.19919 1.11386 0.95314 1.25830 0.90604 1.26791 0.96171 0.95829 0.99299 1.69856 1.35333 1.03133 1.35775 0.85202 0.78731 0.78418 0.77408 1.18943 1.18823 1.18095 1.21257 0.94079 1.02989 1.03502 1.20727 0.96915 0.95775 0.95285 1.78351 1.09033 1.20854 1.00867 1.74962 1.18568 0.98223 1.24615 0.88090 0.93087 0.93759 0.91873 0.92626 0.92800 0.90208 0.91468 0.75789 0.75237 0.87312 0.83867 0.85709 0.88434 0.89881 0.88405 0.87994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 11.01 113.37 1.25 1.58 16 2 O -0.40 -8.18 9.92 -139.79 -1.39 -9.56 16 3 C 0.05 1.04 5.01 71.98 0.36 1.40 16 4 C 0.24 5.41 1.15 -11.54 -0.01 5.40 16 5 C -0.13 -3.18 8.68 71.98 0.62 -2.55 16 6 O -0.55 -10.45 12.37 -139.79 -1.73 -12.18 16 7 C -0.07 -1.95 5.71 41.60 0.24 -1.72 16 8 C -0.03 -0.61 10.75 83.49 0.90 0.29 16 9 N -0.27 -7.96 3.43 -351.46 -1.21 -9.16 16 10 C 0.18 4.65 6.57 85.63 0.56 5.22 16 11 C -0.24 -9.21 5.27 -19.68 -0.10 -9.31 16 12 C -0.06 -2.60 9.67 22.22 0.21 -2.38 16 13 C -0.25 -12.06 9.80 22.73 0.22 -11.83 16 14 C 0.09 4.75 5.58 -21.29 -0.12 4.63 16 15 C -0.50 -26.84 9.05 23.46 0.21 -26.63 16 16 H 0.08 3.98 7.91 -2.91 -0.02 3.96 16 17 C 0.04 1.78 5.14 85.26 0.44 2.21 16 18 N -0.82 -42.36 10.95 21.83 0.24 -42.12 16 19 Si 0.98 38.26 29.60 68.60 2.03 40.29 16 20 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 21 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 22 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 23 C -0.20 -10.49 8.70 22.73 0.20 -10.29 16 24 C -0.07 -3.07 9.67 22.22 0.21 -2.85 16 25 N -0.11 -4.16 12.92 37.02 0.48 -3.68 16 26 N -0.30 -10.39 12.41 -48.60 -0.60 -10.99 16 27 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.04 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.08 1.85 7.68 -2.39 -0.02 1.84 16 34 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 35 H 0.39 4.09 8.70 -74.06 -0.64 3.45 16 36 H 0.23 2.97 7.83 -2.91 -0.02 2.94 16 37 H 0.11 2.57 8.08 -2.39 -0.02 2.55 16 38 H 0.14 2.52 8.01 -2.39 -0.02 2.50 16 39 H 0.13 4.01 8.06 -2.91 -0.02 3.99 16 40 H 0.10 4.46 8.06 -2.91 -0.02 4.43 16 41 H 0.29 13.57 8.30 -92.70 -0.77 12.80 16 42 H 0.10 5.48 6.15 -2.91 -0.02 5.46 16 43 H 0.10 4.24 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -69.31 368.50 3.40 -65.91 By element: Atomic # 1 Polarization: 27.96 SS G_CDS: 0.38 Total: 28.34 kcal Atomic # 6 Polarization: -52.03 SS G_CDS: 5.20 Total: -46.84 kcal Atomic # 7 Polarization: -64.86 SS G_CDS: -1.09 Total: -65.96 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -3.12 Total: -21.74 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 2.03 Total: 40.29 kcal Total: -69.31 3.40 -65.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881296890.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.148 kcal (2) G-P(sol) polarization free energy of solvation -69.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds