Wall clock time and date at job start Tue Mar 31 2020 12:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 114.00211 * 2 1 4 4 C 1.52998 * 109.47437 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47146 * 305.00003 * 4 3 2 6 6 O 1.42899 * 109.47273 * 64.99899 * 4 3 2 7 7 C 1.50700 * 109.47079 * 185.00338 * 4 3 2 8 8 C 1.35344 * 126.75167 * 185.00187 * 7 4 3 9 9 N 1.35312 * 106.17859 * 180.20011 * 8 7 4 10 10 C 1.46500 * 125.87206 * 179.76853 * 9 8 7 11 11 C 1.50702 * 109.46909 * 125.00151 * 10 9 8 12 12 C 1.38632 * 119.75027 * 269.72746 * 11 10 9 13 13 C 1.37623 * 120.24800 * 179.72142 * 12 11 10 14 14 C 1.40713 * 119.74113 * 0.57591 * 13 12 11 15 15 C 1.41394 * 120.24144 * 179.68365 * 14 13 12 16 16 H 1.07998 * 120.00448 * 24.39957 * 15 14 13 17 17 C 1.39945 * 119.99833 * 204.40321 * 15 14 13 18 18 N 1.30822 * 120.00012 * 17.86247 * 17 15 14 19 19 Si 1.86803 * 119.99945 * 197.86642 * 17 15 14 20 20 H 1.48501 * 109.47254 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47357 * 120.00187 * 19 17 15 22 22 H 1.48505 * 109.46954 * 239.99583 * 19 17 15 23 23 C 1.40714 * 119.51305 * 359.69891 * 14 13 12 24 24 C 1.37621 * 119.74866 * 0.02562 * 23 14 13 25 25 N 1.28714 * 108.25923 * 359.62553 * 9 8 7 26 26 N 1.28633 * 110.18138 * 0.38840 * 25 9 8 27 27 H 1.08991 * 109.47066 * 59.99936 * 1 2 3 28 28 H 1.09001 * 109.46792 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47133 * 299.99500 * 1 2 3 30 30 H 1.09009 * 109.46461 * 59.99912 * 3 2 1 31 31 H 1.09000 * 109.46956 * 300.00527 * 3 2 1 32 32 H 1.09003 * 109.47373 * 300.00254 * 5 4 3 33 33 H 1.09000 * 109.46779 * 59.99840 * 5 4 3 34 34 H 1.09002 * 109.47324 * 180.02562 * 5 4 3 35 35 H 0.96704 * 113.99587 * 59.99752 * 6 4 3 36 36 H 1.08003 * 126.91531 * 359.94102 * 8 7 4 37 37 H 1.08994 * 109.47222 * 245.00536 * 10 9 8 38 38 H 1.08997 * 109.46903 * 5.00422 * 10 9 8 39 39 H 1.07998 * 119.87621 * 359.97438 * 12 11 10 40 40 H 1.07994 * 120.12664 * 180.28064 * 13 12 11 41 41 H 0.97003 * 119.99695 * 180.02562 * 18 17 15 42 42 H 1.08005 * 120.12652 * 179.97438 * 23 14 13 43 43 H 1.07994 * 119.87793 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 3.9791 0.3194 1.1807 6 8 3.9649 0.5797 -1.2219 7 6 4.1480 2.5560 0.1233 8 6 5.4648 2.8631 0.0638 9 7 5.5470 4.2038 0.2277 10 6 6.7812 4.9930 0.2404 11 6 6.6875 6.0884 -0.7903 12 6 7.1284 5.8554 -2.0838 13 6 7.0424 6.8466 -3.0347 14 6 6.5157 8.1041 -2.6865 15 6 6.4287 9.1321 -3.6534 16 1 6.3801 8.8835 -4.7032 17 6 6.4055 10.4720 -3.2499 18 7 6.8077 10.8006 -2.0492 19 14 5.7999 11.7912 -4.4257 20 1 5.4048 11.1639 -5.7124 21 1 4.6283 12.4838 -3.8318 22 1 6.8859 12.7747 -4.6678 23 6 6.0766 8.3311 -1.3691 24 6 6.1668 7.3235 -0.4361 25 7 4.3542 4.6668 0.3676 26 7 3.4972 3.7092 0.3132 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6886 1.8463 0.8901 31 1 1.6886 1.8464 -0.8899 32 1 3.6515 0.7808 2.1123 33 1 3.5360 -0.6725 1.0911 34 1 5.0657 0.2337 1.1805 35 1 3.7175 1.0753 -2.0146 36 1 6.2853 2.1759 -0.0808 37 1 6.9205 5.4337 1.2275 38 1 7.6279 4.3470 0.0082 39 1 7.5372 4.8911 -2.3474 40 1 7.3823 6.6614 -4.0429 41 1 6.7913 11.7292 -1.7694 42 1 5.6710 9.2927 -1.0909 43 1 5.8308 7.4955 0.5758 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881296894.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:54 Heat of formation + Delta-G solvation = 16.400931 kcal Electronic energy + Delta-G solvation = -25731.216870 eV Core-core repulsion = 21971.468004 eV Total energy + Delta-G solvation = -3759.748866 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.99370 -38.83020 -37.84539 -36.73240 -34.83539 -33.49918 -32.27478 -30.60822 -29.73478 -29.45543 -27.67432 -27.36854 -25.81818 -24.42386 -22.97976 -21.70940 -21.19852 -20.57698 -19.77882 -17.71676 -17.48010 -16.73413 -16.33101 -16.17927 -15.91265 -15.47286 -15.25881 -14.51026 -14.21468 -14.14377 -13.93697 -13.81058 -13.61325 -12.73977 -12.51793 -12.42307 -12.30781 -12.13053 -12.06014 -11.80408 -11.73209 -11.51898 -11.33525 -11.17669 -10.99906 -10.86448 -10.64239 -10.60338 -10.16456 -9.98573 -9.78785 -9.65884 -9.49744 -9.30518 -9.01918 -7.65162 -7.56937 -6.95376 -4.55152 1.91100 2.29395 2.68204 2.84110 2.93436 2.98980 3.04031 3.21676 3.52900 3.80168 4.15475 4.40904 4.46523 4.73533 4.88654 4.99499 5.01065 5.19495 5.21333 5.41619 5.44536 5.48420 5.49397 5.54080 5.57058 5.68898 5.78436 5.82463 6.00396 6.11101 6.12276 6.22586 6.30161 6.78991 6.88920 6.91493 7.00460 7.08437 7.16093 7.42481 7.54008 7.62232 7.88114 7.88286 8.10535 8.46069 8.70248 8.77778 8.83263 9.98308 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021144 B = 0.002608 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.955274 B =10733.047001 C =11273.422200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.046 3.954 4 C 0.231 3.769 5 C -0.128 4.128 6 O -0.546 6.546 7 C -0.074 4.074 8 C -0.032 4.032 9 N -0.268 5.268 10 C 0.174 3.826 11 C -0.258 4.258 12 C -0.065 4.065 13 C -0.231 4.231 14 C 0.121 3.879 15 C -0.453 4.453 16 H 0.081 0.919 17 C 0.075 3.925 18 N -0.782 5.782 19 Si 0.910 3.090 20 H -0.259 1.259 21 H -0.270 1.270 22 H -0.273 1.273 23 C -0.170 4.170 24 C -0.061 4.061 25 N -0.061 5.061 26 N -0.278 5.278 27 H 0.040 0.960 28 H 0.084 0.916 29 H 0.040 0.960 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.379 0.621 36 H 0.185 0.815 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.283 0.717 42 H 0.120 0.880 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.341 -14.423 5.029 15.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C -0.031 4.031 4 C 0.188 3.812 5 C -0.185 4.185 6 O -0.350 6.350 7 C -0.213 4.213 8 C -0.184 4.184 9 N -0.062 5.062 10 C 0.056 3.944 11 C -0.261 4.261 12 C -0.083 4.083 13 C -0.251 4.251 14 C 0.118 3.882 15 C -0.481 4.481 16 H 0.099 0.901 17 C -0.144 4.144 18 N -0.406 5.406 19 Si 0.734 3.266 20 H -0.182 1.182 21 H -0.195 1.195 22 H -0.198 1.198 23 C -0.190 4.190 24 C -0.080 4.080 25 N -0.041 5.041 26 N -0.146 5.146 27 H 0.059 0.941 28 H 0.103 0.897 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.226 0.774 36 H 0.202 0.798 37 H 0.110 0.890 38 H 0.115 0.885 39 H 0.104 0.896 40 H 0.112 0.888 41 H 0.094 0.906 42 H 0.138 0.862 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.749 -13.538 5.830 15.486 hybrid contribution 0.213 0.607 -1.089 1.265 sum -4.536 -12.931 4.741 14.500 Atomic orbital electron populations 1.22732 0.81233 1.02488 1.00063 1.87870 1.19383 1.27496 1.95471 1.23051 0.93453 0.84545 1.02033 1.19032 0.90005 0.85400 0.86758 1.21642 1.01845 1.00182 0.94858 1.86560 1.81287 1.52075 1.15109 1.22307 0.91629 0.96261 1.11133 1.23254 0.99659 0.86378 1.09093 1.48273 1.08940 1.05870 1.43068 1.20896 0.80144 0.92433 1.00903 1.18680 1.18359 0.94693 0.94320 1.20333 0.98392 0.96857 0.92766 1.20926 1.10094 0.95842 0.98210 1.17704 0.86437 0.91396 0.92621 1.19741 1.43197 0.90232 0.94944 0.90080 1.25992 0.92307 1.00353 0.95794 1.69822 1.31665 1.20317 1.18817 0.86222 0.79324 0.79874 0.81172 1.18232 1.19457 1.19790 1.21302 1.04925 0.98818 0.93928 1.20483 0.97161 0.92636 0.97758 1.78337 0.86780 1.21031 1.17954 1.75047 1.25654 0.96345 1.17512 0.94126 0.89726 0.94125 0.91545 0.92598 0.91260 0.90420 0.91858 0.77354 0.79819 0.88983 0.88520 0.89553 0.88766 0.90553 0.86222 0.89127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.38 -4.59 9.79 -40.08 -0.39 -4.99 16 3 C 0.05 0.57 4.64 37.16 0.17 0.74 16 4 C 0.23 2.90 1.10 -91.77 -0.10 2.80 16 5 C -0.13 -1.40 8.58 37.16 0.32 -1.09 16 6 O -0.55 -6.77 12.90 -40.08 -0.52 -7.29 16 7 C -0.07 -1.09 5.79 -82.78 -0.48 -1.57 16 8 C -0.03 -0.44 11.37 -17.05 -0.19 -0.64 16 9 N -0.27 -4.40 3.43 -62.45 -0.21 -4.62 16 10 C 0.17 2.68 6.57 -5.19 -0.03 2.65 16 11 C -0.26 -5.17 5.27 -104.33 -0.55 -5.72 16 12 C -0.06 -1.35 9.67 -39.66 -0.38 -1.73 16 13 C -0.23 -5.43 9.80 -38.87 -0.38 -5.81 16 14 C 0.12 3.12 5.57 -106.83 -0.60 2.53 16 15 C -0.45 -11.58 9.05 -37.74 -0.34 -11.92 16 16 H 0.08 2.00 7.91 -52.49 -0.41 1.58 16 17 C 0.08 1.81 5.14 -17.34 -0.09 1.72 16 18 N -0.78 -19.35 10.95 55.55 0.61 -18.74 16 19 Si 0.91 17.97 29.60 -169.99 -5.03 12.93 16 20 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 21 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 22 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 23 C -0.17 -4.28 8.70 -38.87 -0.34 -4.62 16 24 C -0.06 -1.37 9.67 -39.66 -0.38 -1.75 16 25 N -0.06 -1.17 12.92 60.35 0.78 -0.39 16 26 N -0.28 -4.95 11.73 33.29 0.39 -4.56 16 27 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.84 8.06 -51.92 -0.42 0.42 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.85 7.56 -51.93 -0.39 0.46 16 34 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 35 H 0.38 3.88 9.04 45.56 0.41 4.29 16 36 H 0.18 1.96 8.06 -52.48 -0.42 1.54 16 37 H 0.09 1.29 8.08 -51.93 -0.42 0.87 16 38 H 0.10 1.19 8.00 -51.93 -0.42 0.77 16 39 H 0.09 1.56 8.06 -52.49 -0.42 1.13 16 40 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 41 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 42 H 0.12 3.12 6.16 -52.48 -0.32 2.80 16 43 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 LS Contribution 368.72 15.07 5.56 5.56 Total: -1.00 -29.33 368.72 -6.42 -35.75 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -5.33 Total: 9.36 kcal Atomic # 6 Polarization: -20.75 SS G_CDS: -2.27 Total: -23.02 kcal Atomic # 7 Polarization: -29.87 SS G_CDS: 1.56 Total: -28.30 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: -0.91 Total: -12.27 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.93 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.33 -6.42 -35.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881296894.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.147 kcal (2) G-P(sol) polarization free energy of solvation -29.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds