Wall clock time and date at job start Tue Mar 31 2020 12:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 114.00211 * 2 1 4 4 C 1.52998 * 109.47437 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47146 * 305.00003 * 4 3 2 6 6 O 1.42899 * 109.47273 * 64.99899 * 4 3 2 7 7 C 1.50700 * 109.47079 * 185.00338 * 4 3 2 8 8 C 1.35344 * 126.75167 * 185.00187 * 7 4 3 9 9 N 1.35312 * 106.17859 * 180.20011 * 8 7 4 10 10 C 1.46500 * 125.87206 * 179.76853 * 9 8 7 11 11 C 1.50702 * 109.46909 * 125.00151 * 10 9 8 12 12 C 1.38632 * 119.75027 * 269.72746 * 11 10 9 13 13 C 1.37623 * 120.24800 * 179.72142 * 12 11 10 14 14 C 1.40713 * 119.74113 * 0.57591 * 13 12 11 15 15 C 1.41394 * 120.24144 * 179.68365 * 14 13 12 16 16 H 1.07998 * 120.00448 * 24.39957 * 15 14 13 17 17 C 1.39945 * 119.99833 * 204.40321 * 15 14 13 18 18 N 1.30822 * 120.00012 * 17.86247 * 17 15 14 19 19 Si 1.86803 * 119.99945 * 197.86642 * 17 15 14 20 20 H 1.48501 * 109.47254 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47357 * 120.00187 * 19 17 15 22 22 H 1.48505 * 109.46954 * 239.99583 * 19 17 15 23 23 C 1.40714 * 119.51305 * 359.69891 * 14 13 12 24 24 C 1.37621 * 119.74866 * 0.02562 * 23 14 13 25 25 N 1.28714 * 108.25923 * 359.62553 * 9 8 7 26 26 N 1.28633 * 110.18138 * 0.38840 * 25 9 8 27 27 H 1.08991 * 109.47066 * 59.99936 * 1 2 3 28 28 H 1.09001 * 109.46792 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47133 * 299.99500 * 1 2 3 30 30 H 1.09009 * 109.46461 * 59.99912 * 3 2 1 31 31 H 1.09000 * 109.46956 * 300.00527 * 3 2 1 32 32 H 1.09003 * 109.47373 * 300.00254 * 5 4 3 33 33 H 1.09000 * 109.46779 * 59.99840 * 5 4 3 34 34 H 1.09002 * 109.47324 * 180.02562 * 5 4 3 35 35 H 0.96704 * 113.99587 * 59.99752 * 6 4 3 36 36 H 1.08003 * 126.91531 * 359.94102 * 8 7 4 37 37 H 1.08994 * 109.47222 * 245.00536 * 10 9 8 38 38 H 1.08997 * 109.46903 * 5.00422 * 10 9 8 39 39 H 1.07998 * 119.87621 * 359.97438 * 12 11 10 40 40 H 1.07994 * 120.12664 * 180.28064 * 13 12 11 41 41 H 0.97003 * 119.99695 * 180.02562 * 18 17 15 42 42 H 1.08005 * 120.12652 * 179.97438 * 23 14 13 43 43 H 1.07994 * 119.87793 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 3.9791 0.3194 1.1807 6 8 3.9649 0.5797 -1.2219 7 6 4.1480 2.5560 0.1233 8 6 5.4648 2.8631 0.0638 9 7 5.5470 4.2038 0.2277 10 6 6.7812 4.9930 0.2404 11 6 6.6875 6.0884 -0.7903 12 6 7.1284 5.8554 -2.0838 13 6 7.0424 6.8466 -3.0347 14 6 6.5157 8.1041 -2.6865 15 6 6.4287 9.1321 -3.6534 16 1 6.3801 8.8835 -4.7032 17 6 6.4055 10.4720 -3.2499 18 7 6.8077 10.8006 -2.0492 19 14 5.7999 11.7912 -4.4257 20 1 5.4048 11.1639 -5.7124 21 1 4.6283 12.4838 -3.8318 22 1 6.8859 12.7747 -4.6678 23 6 6.0766 8.3311 -1.3691 24 6 6.1668 7.3235 -0.4361 25 7 4.3542 4.6668 0.3676 26 7 3.4972 3.7092 0.3132 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6886 1.8463 0.8901 31 1 1.6886 1.8464 -0.8899 32 1 3.6515 0.7808 2.1123 33 1 3.5360 -0.6725 1.0911 34 1 5.0657 0.2337 1.1805 35 1 3.7175 1.0753 -2.0146 36 1 6.2853 2.1759 -0.0808 37 1 6.9205 5.4337 1.2275 38 1 7.6279 4.3470 0.0082 39 1 7.5372 4.8911 -2.3474 40 1 7.3823 6.6614 -4.0429 41 1 6.7913 11.7292 -1.7694 42 1 5.6710 9.2927 -1.0909 43 1 5.8308 7.4955 0.5758 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881296894.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:53 Heat of formation + Delta-G solvation = -3.029180 kcal Electronic energy + Delta-G solvation = -25732.059423 eV Core-core repulsion = 21971.468004 eV Total energy + Delta-G solvation = -3760.591419 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.21613 -39.81975 -39.50234 -37.65057 -36.34628 -35.05857 -33.30995 -32.19618 -31.23363 -30.86021 -29.04222 -28.35858 -26.70952 -26.02156 -24.10590 -23.05129 -22.91975 -21.99918 -21.04515 -19.30087 -18.78431 -17.80106 -17.56198 -17.21021 -17.09219 -16.86160 -16.28460 -15.96034 -15.63835 -15.56224 -15.24703 -15.04884 -14.50203 -14.37475 -13.89199 -13.68541 -13.50475 -13.35677 -13.23022 -13.09978 -13.00374 -12.77658 -12.66274 -12.53661 -12.43836 -12.24803 -12.04082 -11.77413 -11.61843 -11.38361 -11.14383 -11.07870 -10.92193 -10.65586 -10.20023 -9.44577 -9.36294 -8.72880 -6.43320 0.63510 0.81680 1.10259 1.34061 1.38115 1.47235 1.49784 1.79467 2.15670 2.62870 2.69688 3.16679 3.44228 3.66067 3.75445 3.91219 3.96701 4.03496 4.09089 4.35632 4.40262 4.44152 4.47768 4.51543 4.52641 4.59735 4.65966 4.83298 4.85500 4.91519 4.98264 5.01363 5.08542 5.14169 5.29422 5.32607 5.36839 5.62577 5.73234 5.84709 6.03449 6.10131 6.15600 6.30239 6.62956 6.67133 6.85733 6.94739 7.58979 8.23802 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021144 B = 0.002608 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.955274 B =10733.047001 C =11273.422200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.396 6.396 3 C 0.051 3.949 4 C 0.233 3.767 5 C -0.125 4.125 6 O -0.549 6.549 7 C -0.076 4.076 8 C -0.015 4.015 9 N -0.271 5.271 10 C 0.175 3.825 11 C -0.240 4.240 12 C -0.064 4.064 13 C -0.250 4.250 14 C 0.089 3.911 15 C -0.495 4.495 16 H 0.076 0.924 17 C 0.035 3.965 18 N -0.816 5.816 19 Si 0.981 3.019 20 H -0.259 1.259 21 H -0.265 1.265 22 H -0.262 1.262 23 C -0.199 4.199 24 C -0.068 4.068 25 N -0.111 5.111 26 N -0.299 5.299 27 H 0.043 0.957 28 H 0.103 0.897 29 H 0.046 0.954 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.387 0.613 36 H 0.226 0.774 37 H 0.108 0.892 38 H 0.142 0.858 39 H 0.126 0.874 40 H 0.098 0.902 41 H 0.290 0.710 42 H 0.098 0.902 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.670 -16.896 5.441 18.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.315 6.315 3 C -0.027 4.027 4 C 0.190 3.810 5 C -0.182 4.182 6 O -0.355 6.355 7 C -0.216 4.216 8 C -0.168 4.168 9 N -0.064 5.064 10 C 0.058 3.942 11 C -0.242 4.242 12 C -0.082 4.082 13 C -0.270 4.270 14 C 0.086 3.914 15 C -0.524 4.524 16 H 0.094 0.906 17 C -0.181 4.181 18 N -0.442 5.442 19 Si 0.801 3.199 20 H -0.182 1.182 21 H -0.190 1.190 22 H -0.186 1.186 23 C -0.218 4.218 24 C -0.087 4.087 25 N -0.091 5.091 26 N -0.165 5.165 27 H 0.062 0.938 28 H 0.122 0.878 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.236 0.764 36 H 0.242 0.758 37 H 0.126 0.874 38 H 0.160 0.840 39 H 0.143 0.857 40 H 0.116 0.884 41 H 0.101 0.899 42 H 0.116 0.884 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.088 -16.012 6.245 17.666 hybrid contribution -0.025 1.112 -1.107 1.569 sum -4.113 -14.900 5.138 16.289 Atomic orbital electron populations 1.22940 0.79732 1.03950 1.00545 1.87843 1.21068 1.27109 1.95517 1.22938 0.93712 0.84727 1.01278 1.19097 0.89901 0.84601 0.87436 1.21643 1.02702 0.99739 0.94149 1.86546 1.81279 1.52261 1.15426 1.22719 0.92101 0.96282 1.10496 1.23877 1.00488 0.85667 1.06748 1.48122 1.08318 1.06825 1.43138 1.21052 0.81039 0.92018 1.00139 1.19111 1.14815 0.95030 0.95248 1.20733 0.97446 0.97703 0.92358 1.21163 1.10510 0.95992 0.99333 1.18034 0.87582 0.92710 0.93081 1.19939 1.46082 0.91567 0.94829 0.90580 1.26788 0.91841 1.01984 0.97452 1.69866 1.32728 1.21140 1.20432 0.85174 0.78934 0.76992 0.78753 1.18211 1.18972 1.18635 1.21256 1.06718 0.99010 0.94842 1.20723 0.97011 0.93233 0.97745 1.78340 0.87972 1.22157 1.20595 1.75001 1.26301 0.97375 1.17857 0.93799 0.87822 0.93512 0.92324 0.93396 0.91082 0.90430 0.90516 0.76441 0.75790 0.87423 0.83966 0.85654 0.88370 0.89904 0.88438 0.88080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 11.01 113.37 1.25 1.64 16 2 O -0.40 -8.89 9.79 -144.35 -1.41 -10.30 16 3 C 0.05 1.19 4.64 71.98 0.33 1.53 16 4 C 0.23 5.30 1.10 -11.54 -0.01 5.29 16 5 C -0.12 -2.39 8.58 71.98 0.62 -1.78 16 6 O -0.55 -12.13 12.90 -144.35 -1.86 -13.99 16 7 C -0.08 -2.05 5.79 41.59 0.24 -1.81 16 8 C -0.02 -0.37 11.37 83.49 0.95 0.58 16 9 N -0.27 -8.02 3.43 -351.48 -1.21 -9.22 16 10 C 0.18 4.69 6.57 85.63 0.56 5.25 16 11 C -0.24 -9.12 5.27 -19.67 -0.10 -9.22 16 12 C -0.06 -2.52 9.67 22.22 0.21 -2.31 16 13 C -0.25 -11.85 9.80 22.73 0.22 -11.63 16 14 C 0.09 4.74 5.57 -21.29 -0.12 4.62 16 15 C -0.50 -26.61 9.05 23.46 0.21 -26.40 16 16 H 0.08 3.96 7.91 -2.91 -0.02 3.94 16 17 C 0.04 1.77 5.14 85.26 0.44 2.21 16 18 N -0.82 -42.22 10.95 21.83 0.24 -41.99 16 19 Si 0.98 37.96 29.60 68.60 2.03 39.99 16 20 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 21 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 22 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 23 C -0.20 -10.42 8.70 22.73 0.20 -10.22 16 24 C -0.07 -3.06 9.67 22.22 0.21 -2.84 16 25 N -0.11 -4.12 12.92 37.02 0.48 -3.64 16 26 N -0.30 -10.29 11.73 -48.60 -0.57 -10.86 16 27 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 1.45 8.06 -2.38 -0.02 1.43 16 31 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.08 1.50 7.56 -2.39 -0.02 1.49 16 34 H 0.08 1.25 8.12 -2.39 -0.02 1.23 16 35 H 0.39 7.05 9.04 -74.05 -0.67 6.38 16 36 H 0.23 3.39 8.06 -2.91 -0.02 3.36 16 37 H 0.11 2.61 8.08 -2.39 -0.02 2.59 16 38 H 0.14 2.58 8.00 -2.39 -0.02 2.56 16 39 H 0.13 3.95 8.06 -2.91 -0.02 3.93 16 40 H 0.10 4.41 8.06 -2.91 -0.02 4.39 16 41 H 0.29 13.48 8.30 -92.71 -0.77 12.71 16 42 H 0.10 5.43 6.16 -2.91 -0.02 5.41 16 43 H 0.10 4.21 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -66.98 368.72 3.27 -63.71 By element: Atomic # 1 Polarization: 31.03 SS G_CDS: 0.36 Total: 31.38 kcal Atomic # 6 Polarization: -50.31 SS G_CDS: 5.22 Total: -45.09 kcal Atomic # 7 Polarization: -64.65 SS G_CDS: -1.06 Total: -65.70 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -3.28 Total: -24.29 kcal Atomic # 14 Polarization: 37.96 SS G_CDS: 2.03 Total: 39.99 kcal Total: -66.98 3.27 -63.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881296894.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.685 kcal (2) G-P(sol) polarization free energy of solvation -66.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds