Wall clock time and date at job start Tue Mar 31 2020 12:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.47334 * 2 1 4 4 O 1.21286 * 119.99845 * 0.02562 * 3 2 1 5 5 N 1.34769 * 119.99903 * 180.02562 * 3 2 1 6 6 C 1.47025 * 125.65310 * 359.96028 * 5 3 2 7 7 C 1.54320 * 107.27490 * 178.97677 * 6 5 3 8 8 C 1.55155 * 102.94163 * 337.80443 * 7 6 5 9 9 H 1.09004 * 111.00565 * 277.42879 * 8 7 6 10 10 C 1.50699 * 111.00549 * 153.57789 * 8 7 6 11 11 O 1.21275 * 119.99949 * 247.80335 * 10 8 7 12 12 N 1.34771 * 120.00107 * 67.80497 * 10 8 7 13 13 C 1.39266 * 120.00430 * 174.86928 * 12 10 8 14 14 C 1.39669 * 119.58003 * 185.40154 * 13 12 10 15 15 C 1.38660 * 119.49763 * 179.74286 * 14 13 12 16 16 C 1.38342 * 118.66700 * 0.52129 * 15 14 13 17 17 C 1.40586 * 119.13082 * 359.74637 * 16 15 14 18 18 C 1.41336 * 119.78383 * 180.02562 * 17 16 15 19 19 H 1.07991 * 120.00512 * 359.97438 * 18 17 16 20 20 C 1.40028 * 119.99646 * 179.97438 * 18 17 16 21 21 N 1.30752 * 120.00108 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00264 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47042 * 90.00112 * 22 20 18 24 24 H 1.48495 * 109.47349 * 210.00273 * 22 20 18 25 25 H 1.48500 * 109.46943 * 330.00680 * 22 20 18 26 26 N 1.31907 * 119.57296 * 5.67393 * 13 12 10 27 27 C 1.47428 * 125.64883 * 179.97438 * 5 3 2 28 28 H 1.09001 * 109.47131 * 59.99601 * 1 2 3 29 29 H 1.08995 * 109.47575 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46897 * 299.99885 * 1 2 3 31 31 H 1.09001 * 109.46520 * 240.00063 * 2 1 3 32 32 H 1.09001 * 109.47131 * 120.00399 * 2 1 3 33 33 H 1.09002 * 109.88339 * 59.55561 * 6 5 3 34 34 H 1.09001 * 110.00460 * 298.46558 * 6 5 3 35 35 H 1.09001 * 110.71954 * 219.44125 * 7 6 5 36 36 H 1.09001 * 110.72412 * 96.16681 * 7 6 5 37 37 H 0.96999 * 119.99836 * 354.86608 * 12 10 8 38 38 H 1.07999 * 120.24956 * 0.02562 * 14 13 12 39 39 H 1.07998 * 120.66679 * 180.26642 * 15 14 13 40 40 H 1.07998 * 120.43657 * 179.77269 * 16 15 14 41 41 H 0.96995 * 120.00107 * 179.97438 * 21 20 18 42 42 H 1.09003 * 110.36209 * 85.25382 * 27 5 3 43 43 H 1.08999 * 110.36546 * 322.93246 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6670 -0.0005 6 6 4.4182 0.6490 -0.0003 7 6 5.7690 1.3947 -0.0274 8 6 5.3891 2.7806 -0.6125 9 1 5.3403 2.7451 -1.7009 10 6 6.3523 3.8440 -0.1516 11 8 5.9767 4.7171 0.6017 12 7 7.6312 3.8247 -0.5764 13 6 8.4933 4.8647 -0.2376 14 6 9.7823 4.8944 -0.7746 15 6 10.6374 5.9335 -0.4403 16 6 10.1869 6.9099 0.4301 17 6 8.8803 6.8208 0.9414 18 6 8.4057 7.8110 1.8312 19 1 9.0461 8.6324 2.1166 20 6 7.1049 7.7270 2.3428 21 7 6.3293 6.7328 1.9970 22 14 6.4776 9.0353 3.5194 23 1 5.8366 10.1295 2.7468 24 1 5.4834 8.4339 4.4440 25 1 7.6144 9.5826 4.3027 26 7 8.0838 5.8061 0.5907 27 6 3.9833 3.0018 -0.0011 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 4.3258 0.0171 -0.8836 34 1 4.3495 0.0391 0.9005 35 1 6.4789 0.8831 -0.6773 36 1 6.1724 1.4988 0.9798 37 1 7.9512 3.0865 -1.1182 38 1 10.1089 4.1164 -1.4488 39 1 11.6365 5.9775 -0.8480 40 1 10.8302 7.7300 0.7127 41 1 5.4284 6.6744 2.3517 42 1 4.0681 3.3814 1.0172 43 1 3.4059 3.6913 -0.6171 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882473691.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:38 Heat of formation + Delta-G solvation = -15.081274 kcal Electronic energy + Delta-G solvation = -26408.481235 eV Core-core repulsion = 22647.367198 eV Total energy + Delta-G solvation = -3761.114037 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.35066 -39.25066 -37.89267 -36.73690 -34.16135 -33.07524 -33.03003 -31.70518 -30.32090 -29.30656 -28.87890 -25.83145 -25.24998 -23.13595 -22.57554 -21.52755 -20.89941 -19.26930 -19.11365 -17.84179 -17.30338 -16.94406 -16.16276 -15.77250 -15.30231 -14.78494 -14.61618 -14.47160 -14.36254 -13.70233 -13.60887 -13.42519 -13.34342 -12.94626 -12.81138 -12.46652 -12.31112 -12.17884 -11.99263 -11.88732 -11.64570 -11.39009 -11.21984 -11.12934 -10.95674 -10.89539 -10.66333 -10.48585 -9.94504 -9.89725 -9.70339 -9.04405 -9.02397 -8.68841 -7.98818 -7.24240 -6.99852 -6.15569 -4.41363 2.57449 2.73894 2.84803 3.04975 3.18549 3.20275 3.26030 3.62110 3.79548 4.06419 4.26421 4.41266 4.66595 4.73945 4.85810 4.89892 4.92346 5.13788 5.20354 5.28929 5.39659 5.42963 5.55870 5.63410 5.70661 5.84689 5.98055 6.00203 6.02755 6.09365 6.12336 6.25153 6.46331 6.64950 6.81175 6.83080 7.22446 7.43066 7.52820 7.59812 7.79219 8.03213 8.10390 8.17617 8.43722 8.72033 9.03082 9.20009 10.22038 10.46692 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014495 B = 0.003656 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.250727 B = 7656.886639 C = 9383.388192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.139 4.139 3 C 0.524 3.476 4 O -0.540 6.540 5 N -0.622 5.622 6 C 0.103 3.897 7 C -0.122 4.122 8 C -0.123 4.123 9 H 0.102 0.898 10 C 0.482 3.518 11 O -0.403 6.403 12 N -0.664 5.664 13 C 0.371 3.629 14 C -0.357 4.357 15 C -0.037 4.037 16 C -0.305 4.305 17 C 0.270 3.730 18 C -0.424 4.424 19 H 0.082 0.918 20 C 0.058 3.942 21 N -0.656 5.656 22 Si 0.896 3.104 23 H -0.271 1.271 24 H -0.278 1.278 25 H -0.264 1.264 26 N -0.474 5.474 27 C 0.126 3.874 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.398 0.602 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.273 0.727 42 H 0.088 0.912 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.112 -16.118 -4.818 17.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.179 4.179 3 C 0.313 3.687 4 O -0.416 6.416 5 N -0.357 5.357 6 C -0.020 4.020 7 C -0.160 4.160 8 C -0.146 4.146 9 H 0.120 0.880 10 C 0.262 3.738 11 O -0.265 6.265 12 N -0.311 5.311 13 C 0.132 3.868 14 C -0.383 4.383 15 C -0.061 4.061 16 C -0.328 4.328 17 C 0.145 3.855 18 C -0.454 4.454 19 H 0.100 0.900 20 C -0.171 4.171 21 N -0.274 5.274 22 Si 0.720 3.280 23 H -0.196 1.196 24 H -0.203 1.203 25 H -0.188 1.188 26 N -0.193 5.193 27 C 0.004 3.996 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.232 0.768 38 H 0.109 0.891 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.085 0.915 42 H 0.106 0.894 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.082 -15.097 -3.837 17.112 hybrid contribution 1.012 0.058 -0.292 1.055 sum -6.070 -15.040 -4.128 16.736 Atomic orbital electron populations 1.21540 0.93049 1.01453 1.03467 1.21608 0.98487 0.93650 1.04117 1.20446 0.80325 0.91895 0.76053 1.90726 1.54274 1.46771 1.49871 1.48584 1.05140 1.08406 1.73526 1.22036 0.86897 0.91336 1.01774 1.22639 0.96236 0.94081 1.03031 1.22513 0.95289 0.95089 1.01721 0.88027 1.20225 0.82690 0.87306 0.83580 1.91177 1.75002 1.32518 1.27850 1.43356 1.10380 1.23501 1.53821 1.18610 0.86492 0.88887 0.92784 1.20481 0.96265 1.05808 1.15770 1.20563 0.96741 0.93440 0.95337 1.21627 0.99253 1.03091 1.08829 1.18385 0.87070 0.89843 0.90193 1.19589 0.97695 1.06776 1.21342 0.89951 1.26171 0.97359 0.96373 0.97220 1.70300 1.05759 1.22853 1.28534 0.86515 0.79332 0.81502 0.80624 1.19617 1.20285 1.18774 1.68689 1.33597 1.02657 1.14326 1.22030 0.90693 0.83988 1.02938 0.91971 0.92132 0.91934 0.89092 0.89055 0.91176 0.91117 0.89302 0.89669 0.76832 0.89131 0.88645 0.88576 0.91544 0.89404 0.89999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.20 37.16 0.34 -0.85 16 2 C -0.14 -1.17 5.61 -27.88 -0.16 -1.33 16 3 C 0.52 6.90 7.85 -10.99 -0.09 6.81 16 4 O -0.54 -9.49 16.24 5.55 0.09 -9.40 16 5 N -0.62 -7.66 3.33 -170.53 -0.57 -8.23 16 6 C 0.10 0.87 6.49 -3.06 -0.02 0.85 16 7 C -0.12 -1.16 6.41 -24.90 -0.16 -1.32 16 8 C -0.12 -1.61 3.43 -89.64 -0.31 -1.92 16 9 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 10 C 0.48 9.01 7.10 -10.99 -0.08 8.93 16 11 O -0.40 -9.69 11.50 5.56 0.06 -9.63 16 12 N -0.66 -12.22 5.38 -11.40 -0.06 -12.28 16 13 C 0.37 8.78 7.43 -154.98 -1.15 7.63 16 14 C -0.36 -7.82 9.96 -38.89 -0.39 -8.21 16 15 C -0.04 -0.82 10.15 -39.39 -0.40 -1.22 16 16 C -0.30 -7.62 9.83 -38.66 -0.38 -8.00 16 17 C 0.27 7.53 6.55 -85.00 -0.56 6.98 16 18 C -0.42 -11.61 9.14 -37.73 -0.34 -11.96 16 19 H 0.08 2.12 7.85 -52.49 -0.41 1.70 16 20 C 0.06 1.53 5.50 -17.34 -0.10 1.43 16 21 N -0.66 -18.08 9.00 55.55 0.50 -17.58 16 22 Si 0.90 19.41 29.56 -169.99 -5.02 14.38 16 23 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 24 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 25 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 26 N -0.47 -13.08 5.74 -10.26 -0.06 -13.14 16 27 C 0.13 1.89 6.03 -2.54 -0.02 1.87 16 28 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.62 8.10 -51.92 -0.42 0.20 16 31 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.94 8.03 -51.93 -0.42 0.52 16 37 H 0.40 5.47 8.70 -40.82 -0.36 5.11 16 38 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 39 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 40 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 41 H 0.27 7.11 8.29 -40.82 -0.34 6.78 16 42 H 0.09 1.55 7.40 -51.93 -0.38 1.16 16 43 H 0.08 1.35 8.04 -51.93 -0.42 0.93 16 LS Contribution 358.40 15.07 5.40 5.40 Total: -1.00 -34.96 358.40 -9.64 -44.60 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -6.19 Total: 6.17 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: -3.80 Total: -0.31 kcal Atomic # 7 Polarization: -51.04 SS G_CDS: -0.19 Total: -51.22 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: 0.15 Total: -19.03 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.38 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.96 -9.64 -44.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882473691.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.523 kcal (2) G-P(sol) polarization free energy of solvation -34.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds