Wall clock time and date at job start Tue Mar 31 2020 12:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.47334 * 2 1 4 4 O 1.21286 * 119.99845 * 0.02562 * 3 2 1 5 5 N 1.34769 * 119.99903 * 180.02562 * 3 2 1 6 6 C 1.47025 * 125.65310 * 359.96028 * 5 3 2 7 7 C 1.54320 * 107.27490 * 178.97677 * 6 5 3 8 8 C 1.55155 * 102.94163 * 337.80443 * 7 6 5 9 9 H 1.09004 * 111.00565 * 277.42879 * 8 7 6 10 10 C 1.50699 * 111.00549 * 153.57789 * 8 7 6 11 11 O 1.21275 * 119.99949 * 247.80335 * 10 8 7 12 12 N 1.34771 * 120.00107 * 67.80497 * 10 8 7 13 13 C 1.39266 * 120.00430 * 174.86928 * 12 10 8 14 14 C 1.39669 * 119.58003 * 185.40154 * 13 12 10 15 15 C 1.38660 * 119.49763 * 179.74286 * 14 13 12 16 16 C 1.38342 * 118.66700 * 0.52129 * 15 14 13 17 17 C 1.40586 * 119.13082 * 359.74637 * 16 15 14 18 18 C 1.41336 * 119.78383 * 180.02562 * 17 16 15 19 19 H 1.07991 * 120.00512 * 359.97438 * 18 17 16 20 20 C 1.40028 * 119.99646 * 179.97438 * 18 17 16 21 21 N 1.30752 * 120.00108 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00264 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47042 * 90.00112 * 22 20 18 24 24 H 1.48495 * 109.47349 * 210.00273 * 22 20 18 25 25 H 1.48500 * 109.46943 * 330.00680 * 22 20 18 26 26 N 1.31907 * 119.57296 * 5.67393 * 13 12 10 27 27 C 1.47428 * 125.64883 * 179.97438 * 5 3 2 28 28 H 1.09001 * 109.47131 * 59.99601 * 1 2 3 29 29 H 1.08995 * 109.47575 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46897 * 299.99885 * 1 2 3 31 31 H 1.09001 * 109.46520 * 240.00063 * 2 1 3 32 32 H 1.09001 * 109.47131 * 120.00399 * 2 1 3 33 33 H 1.09002 * 109.88339 * 59.55561 * 6 5 3 34 34 H 1.09001 * 110.00460 * 298.46558 * 6 5 3 35 35 H 1.09001 * 110.71954 * 219.44125 * 7 6 5 36 36 H 1.09001 * 110.72412 * 96.16681 * 7 6 5 37 37 H 0.96999 * 119.99836 * 354.86608 * 12 10 8 38 38 H 1.07999 * 120.24956 * 0.02562 * 14 13 12 39 39 H 1.07998 * 120.66679 * 180.26642 * 15 14 13 40 40 H 1.07998 * 120.43657 * 179.77269 * 16 15 14 41 41 H 0.96995 * 120.00107 * 179.97438 * 21 20 18 42 42 H 1.09003 * 110.36209 * 85.25382 * 27 5 3 43 43 H 1.08999 * 110.36546 * 322.93246 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6670 -0.0005 6 6 4.4182 0.6490 -0.0003 7 6 5.7690 1.3947 -0.0274 8 6 5.3891 2.7806 -0.6125 9 1 5.3403 2.7451 -1.7009 10 6 6.3523 3.8440 -0.1516 11 8 5.9767 4.7171 0.6017 12 7 7.6312 3.8247 -0.5764 13 6 8.4933 4.8647 -0.2376 14 6 9.7823 4.8944 -0.7746 15 6 10.6374 5.9335 -0.4403 16 6 10.1869 6.9099 0.4301 17 6 8.8803 6.8208 0.9414 18 6 8.4057 7.8110 1.8312 19 1 9.0461 8.6324 2.1166 20 6 7.1049 7.7270 2.3428 21 7 6.3293 6.7328 1.9970 22 14 6.4776 9.0353 3.5194 23 1 5.8366 10.1295 2.7468 24 1 5.4834 8.4339 4.4440 25 1 7.6144 9.5826 4.3027 26 7 8.0838 5.8061 0.5907 27 6 3.9833 3.0018 -0.0011 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 4.3258 0.0171 -0.8836 34 1 4.3495 0.0391 0.9005 35 1 6.4789 0.8831 -0.6773 36 1 6.1724 1.4988 0.9798 37 1 7.9512 3.0865 -1.1182 38 1 10.1089 4.1164 -1.4488 39 1 11.6365 5.9775 -0.8480 40 1 10.8302 7.7300 0.7127 41 1 5.4284 6.6744 2.3517 42 1 4.0681 3.3814 1.0172 43 1 3.4059 3.6913 -0.6171 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882473691.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:38 Heat of formation + Delta-G solvation = -38.548343 kcal Electronic energy + Delta-G solvation = -26409.498843 eV Core-core repulsion = 22647.367198 eV Total energy + Delta-G solvation = -3762.131645 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.51535 -40.68440 -39.46856 -38.00942 -35.93485 -34.85822 -33.90612 -32.74080 -32.18943 -30.84217 -30.07426 -27.57230 -26.43817 -24.38799 -23.52829 -23.23006 -22.45719 -20.66547 -20.13383 -19.55529 -18.35243 -18.15675 -17.93946 -16.75742 -16.56224 -16.36813 -16.25513 -15.94158 -15.52111 -15.40821 -14.93550 -14.57058 -14.51958 -14.39883 -13.95823 -13.76560 -13.69621 -13.45273 -13.12016 -12.93706 -12.75823 -12.73411 -12.57083 -12.56437 -12.32699 -12.23609 -12.06042 -11.80655 -11.77565 -11.50235 -10.95569 -10.86788 -10.60893 -9.89456 -9.71415 -9.08411 -8.81273 -8.06666 -6.42426 0.91778 1.25452 1.37214 1.48772 1.51436 1.59589 1.84274 2.10880 2.23880 2.43145 2.98213 3.30928 3.50383 3.78099 3.85270 4.05937 4.18128 4.20670 4.24060 4.29260 4.32519 4.41915 4.59535 4.71098 4.77580 4.80583 4.88537 4.90307 4.96272 4.97003 5.01038 5.05825 5.09203 5.13470 5.24556 5.27597 5.36575 5.69146 5.86785 5.93786 6.14652 6.38331 6.50589 6.75199 6.85032 7.08211 7.12293 7.70111 8.35250 8.54572 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014495 B = 0.003656 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.250727 B = 7656.886639 C = 9383.388192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.127 4.127 3 C 0.512 3.488 4 O -0.599 6.599 5 N -0.620 5.620 6 C 0.100 3.900 7 C -0.113 4.113 8 C -0.105 4.105 9 H 0.132 0.868 10 C 0.474 3.526 11 O -0.463 6.463 12 N -0.648 5.648 13 C 0.348 3.652 14 C -0.342 4.342 15 C -0.036 4.036 16 C -0.330 4.330 17 C 0.236 3.764 18 C -0.466 4.466 19 H 0.085 0.915 20 C 0.013 3.987 21 N -0.690 5.690 22 Si 0.971 3.029 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.253 1.253 26 N -0.510 5.510 27 C 0.127 3.873 28 H 0.044 0.956 29 H 0.092 0.908 30 H 0.039 0.961 31 H 0.126 0.874 32 H 0.118 0.882 33 H 0.112 0.888 34 H 0.091 0.909 35 H 0.132 0.868 36 H 0.065 0.935 37 H 0.423 0.577 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.102 0.898 41 H 0.267 0.733 42 H 0.048 0.952 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.883 -19.772 -6.459 21.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.303 3.697 4 O -0.481 6.481 5 N -0.354 5.354 6 C -0.021 4.021 7 C -0.151 4.151 8 C -0.127 4.127 9 H 0.150 0.850 10 C 0.257 3.743 11 O -0.329 6.329 12 N -0.298 5.298 13 C 0.110 3.890 14 C -0.367 4.367 15 C -0.060 4.060 16 C -0.353 4.353 17 C 0.111 3.889 18 C -0.497 4.497 19 H 0.103 0.897 20 C -0.212 4.212 21 N -0.310 5.310 22 Si 0.792 3.208 23 H -0.193 1.193 24 H -0.201 1.201 25 H -0.177 1.177 26 N -0.229 5.229 27 C 0.003 3.997 28 H 0.064 0.936 29 H 0.110 0.890 30 H 0.059 0.941 31 H 0.144 0.856 32 H 0.136 0.864 33 H 0.130 0.870 34 H 0.110 0.890 35 H 0.151 0.849 36 H 0.084 0.916 37 H 0.261 0.739 38 H 0.154 0.846 39 H 0.155 0.845 40 H 0.120 0.880 41 H 0.078 0.922 42 H 0.066 0.934 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.797 -18.839 -5.521 20.469 hybrid contribution 0.743 1.079 0.089 1.313 sum -5.054 -17.760 -5.432 19.247 Atomic orbital electron populations 1.21565 0.93629 1.02825 1.01618 1.21686 0.97870 0.90163 1.06877 1.21526 0.79986 0.93512 0.74673 1.90699 1.55821 1.48971 1.52563 1.48710 1.05935 1.07976 1.72753 1.22377 0.84418 0.90449 1.04842 1.22724 0.98004 0.91715 1.02631 1.22346 0.92036 0.95202 1.03100 0.85007 1.21204 0.83142 0.87594 0.82318 1.91183 1.76020 1.35190 1.30507 1.43293 1.09884 1.23003 1.53588 1.19165 0.88211 0.89335 0.92330 1.21001 0.95055 1.06089 1.14548 1.21055 0.98595 0.92351 0.93969 1.21801 0.98636 1.04654 1.10258 1.18862 0.88555 0.90508 0.90993 1.19879 0.98836 1.07769 1.23254 0.89729 1.26991 0.97164 0.98461 0.98615 1.70512 1.05630 1.24816 1.30015 0.85385 0.78707 0.78455 0.78253 1.19253 1.20103 1.17688 1.68655 1.34720 1.03654 1.15887 1.21713 0.92177 0.85539 1.00281 0.93643 0.88960 0.94142 0.85639 0.86442 0.87001 0.89031 0.84944 0.91582 0.73884 0.84640 0.84523 0.87955 0.92190 0.93379 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.20 71.98 0.66 -1.52 16 2 C -0.13 -1.73 5.61 29.85 0.17 -1.57 16 3 C 0.51 13.14 7.85 87.66 0.69 13.83 16 4 O -0.60 -22.20 16.24 -3.05 -0.05 -22.25 16 5 N -0.62 -14.52 3.33 -811.82 -2.70 -17.22 16 6 C 0.10 1.26 6.49 86.73 0.56 1.82 16 7 C -0.11 -1.75 6.41 31.78 0.20 -1.54 16 8 C -0.10 -2.60 3.43 -10.16 -0.03 -2.63 16 9 H 0.13 2.54 8.14 -2.38 -0.02 2.52 16 10 C 0.47 17.95 7.10 87.66 0.62 18.57 16 11 O -0.46 -23.68 11.50 -3.01 -0.03 -23.72 16 12 N -0.65 -23.00 5.38 -308.38 -1.66 -24.66 16 13 C 0.35 16.33 7.43 133.25 0.99 17.32 16 14 C -0.34 -14.01 9.96 22.72 0.23 -13.79 16 15 C -0.04 -1.52 10.15 22.40 0.23 -1.29 16 16 C -0.33 -16.70 9.83 22.87 0.22 -16.47 16 17 C 0.24 13.73 6.55 40.20 0.26 14.00 16 18 C -0.47 -26.96 9.14 23.47 0.21 -26.74 16 19 H 0.08 4.59 7.85 -2.91 -0.02 4.57 16 20 C 0.01 0.72 5.50 85.29 0.47 1.19 16 21 N -0.69 -40.68 9.00 21.84 0.20 -40.48 16 22 Si 0.97 42.07 29.56 68.60 2.03 44.10 16 23 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 24 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 25 H -0.25 -10.40 7.11 99.48 0.71 -9.70 16 26 N -0.51 -29.14 5.74 -186.36 -1.07 -30.21 16 27 C 0.13 3.98 6.03 86.85 0.52 4.51 16 28 H 0.04 0.86 8.10 -2.39 -0.02 0.84 16 29 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.04 0.80 8.10 -2.38 -0.02 0.78 16 31 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.07 1.32 8.03 -2.39 -0.02 1.30 16 37 H 0.42 10.12 8.70 -92.71 -0.81 9.32 16 38 H 0.14 4.29 8.06 -2.91 -0.02 4.27 16 39 H 0.14 4.64 8.06 -2.91 -0.02 4.61 16 40 H 0.10 4.85 8.06 -2.91 -0.02 4.83 16 41 H 0.27 15.09 8.29 -92.71 -0.77 14.32 16 42 H 0.05 1.88 7.40 -2.39 -0.02 1.86 16 43 H 0.05 1.94 8.04 -2.39 -0.02 1.92 16 Total: -1.00 -86.71 358.40 2.94 -83.77 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: 0.22 Total: 24.98 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: 6.01 Total: 5.69 kcal Atomic # 7 Polarization: -107.34 SS G_CDS: -5.23 Total: -112.57 kcal Atomic # 8 Polarization: -45.88 SS G_CDS: -0.08 Total: -45.97 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -86.71 2.94 -83.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882473691.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.223 kcal (2) G-P(sol) polarization free energy of solvation -86.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds