Wall clock time and date at job start Tue Mar 31 2020 12:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.52065 * 2 1 4 4 C 1.53035 * 109.49520 * 239.92127 * 2 1 3 5 5 C 1.53046 * 109.53696 * 178.68166 * 4 2 1 6 6 C 1.52757 * 109.38116 * 61.24092 * 5 4 2 7 7 N 1.46925 * 109.00759 * 305.58826 * 6 5 4 8 8 C 1.34779 * 120.63116 * 233.58482 * 7 6 5 9 9 O 1.21355 * 119.99927 * 186.58416 * 8 7 6 10 10 C 1.49367 * 119.99928 * 6.57485 * 8 7 6 11 11 O 1.21354 * 119.99739 * 6.72114 * 10 8 7 12 12 N 1.34781 * 119.99872 * 186.71281 * 10 8 7 13 13 C 1.39114 * 119.99522 * 185.03645 * 12 10 8 14 14 C 1.39705 * 119.57515 * 174.79760 * 13 12 10 15 15 C 1.38649 * 119.49532 * 179.97438 * 14 13 12 16 16 C 1.38352 * 118.67039 * 359.73421 * 15 14 13 17 17 C 1.40596 * 119.13406 * 0.53073 * 16 15 14 18 18 C 1.41338 * 119.78715 * 179.73086 * 17 16 15 19 19 H 1.07996 * 119.99927 * 354.54062 * 18 17 16 20 20 C 1.40028 * 119.99890 * 174.53321 * 18 17 16 21 21 N 1.30745 * 120.00254 * 5.02526 * 20 18 17 22 22 Si 1.86800 * 119.99703 * 185.02011 * 20 18 17 23 23 H 1.48502 * 109.47056 * 95.00664 * 22 20 18 24 24 H 1.48507 * 109.47187 * 215.00176 * 22 20 18 25 25 H 1.48490 * 109.47478 * 335.00311 * 22 20 18 26 26 N 1.31931 * 119.57919 * 354.77501 * 13 12 10 27 27 C 1.46932 * 118.74109 * 53.31141 * 7 6 5 28 28 H 1.08999 * 109.47526 * 299.92009 * 1 2 3 29 29 H 1.09002 * 109.47345 * 59.91610 * 1 2 3 30 30 H 1.09002 * 109.47591 * 179.91460 * 1 2 3 31 31 H 1.08991 * 109.46555 * 298.70395 * 4 2 1 32 32 H 1.09003 * 109.45843 * 58.66655 * 4 2 1 33 33 H 1.08999 * 109.49843 * 181.31902 * 5 4 2 34 34 H 1.09007 * 109.49663 * 301.41482 * 5 4 2 35 35 H 1.08999 * 109.50705 * 185.70759 * 6 5 4 36 36 H 1.09002 * 109.43194 * 65.42448 * 6 5 4 37 37 H 0.96999 * 119.99981 * 5.03108 * 12 10 8 38 38 H 1.08000 * 120.25528 * 359.96042 * 14 13 12 39 39 H 1.08000 * 120.66880 * 179.97438 * 15 14 13 40 40 H 1.07997 * 120.43397 * 180.28881 * 16 15 14 41 41 H 0.96993 * 120.00157 * 179.97438 * 21 20 18 42 42 H 1.09005 * 109.58569 * 66.42664 * 27 7 6 43 43 H 1.08998 * 109.58775 * 186.71160 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0407 -0.7230 -1.2483 5 6 3.5708 -0.6949 -1.2661 6 6 4.1055 -1.4215 -0.0333 7 7 3.5046 -0.8291 1.1695 8 6 4.2811 -0.3856 2.1778 9 8 3.7738 -0.0090 3.2139 10 6 5.7662 -0.3577 2.0201 11 8 6.2672 -0.6175 0.9458 12 7 6.5497 -0.0439 3.0710 13 6 7.9242 0.0847 2.8997 14 6 8.7147 0.5163 3.9677 15 6 10.0846 0.6433 3.7954 16 6 10.6304 0.3310 2.5630 17 6 9.7810 -0.0927 1.5258 18 6 10.3232 -0.4099 0.2596 19 1 11.3721 -0.2429 0.0642 20 6 9.5003 -0.9408 -0.7412 21 7 8.2133 -1.0516 -0.5390 22 14 10.2413 -1.4906 -2.3654 23 1 10.5189 -2.9485 -2.3146 24 1 9.2862 -1.2067 -3.4666 25 1 11.5077 -0.7537 -2.6064 26 7 8.4646 -0.2029 1.7310 27 6 2.0412 -0.7238 1.2495 28 1 -0.3634 0.5126 0.8907 29 1 -0.3634 0.5151 -0.8892 30 1 -0.3634 -1.0276 -0.0015 31 1 1.6967 -1.7571 -1.2354 32 1 1.6581 -0.2243 -2.1389 33 1 3.9334 -1.1895 -2.1672 34 1 3.9159 0.3390 -1.2541 35 1 5.1895 -1.3159 0.0099 36 1 3.8412 -2.4774 -0.0917 37 1 6.1551 0.0923 3.9465 38 1 8.2623 0.7493 4.9203 39 1 10.7135 0.9758 4.6079 40 1 11.6944 0.4152 2.3987 41 1 7.6433 -1.4190 -1.2325 42 1 1.6052 -1.7217 1.2979 43 1 1.7636 -0.1602 2.1402 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882474077.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:35 Heat of formation + Delta-G solvation = -1.322863 kcal Electronic energy + Delta-G solvation = -27223.552898 eV Core-core repulsion = 23463.035471 eV Total energy + Delta-G solvation = -3760.517427 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.60131 -38.95318 -37.69374 -37.25605 -34.62536 -33.55099 -32.98799 -31.79135 -30.41765 -29.27121 -27.19711 -26.10229 -25.55943 -23.57063 -22.22844 -21.71908 -21.00666 -19.98892 -19.19553 -17.89384 -16.83082 -16.64925 -16.11354 -15.41712 -15.15355 -14.76095 -14.68548 -14.51734 -14.25999 -14.10502 -13.75787 -13.64245 -13.28383 -12.94416 -12.81166 -12.62902 -12.22066 -12.06678 -12.04921 -11.76798 -11.23875 -11.17828 -11.05588 -11.02715 -10.89694 -10.71294 -10.55175 -10.46277 -10.32667 -9.99723 -9.84126 -9.12969 -8.63816 -8.50672 -8.06640 -7.31929 -7.10211 -6.26985 -4.47992 1.86683 2.73096 2.79111 3.05432 3.12156 3.14889 3.21105 3.87348 3.93003 3.99485 4.60026 4.70448 4.81742 4.83432 4.88282 5.12754 5.31132 5.40757 5.43221 5.56966 5.62521 5.70355 5.76137 5.92540 5.93131 6.01276 6.03116 6.03688 6.12727 6.28658 6.41585 6.44847 6.54884 6.58444 6.76704 6.79654 7.18348 7.34405 7.43861 7.51127 7.73308 7.82902 8.03387 8.14778 8.35019 8.60469 8.89536 8.98027 10.10054 10.37367 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013439 B = 0.004742 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.009415 B = 5902.895699 C = 7825.791304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.107 4.107 3 H 0.074 0.926 4 C -0.116 4.116 5 C -0.128 4.128 6 C 0.043 3.957 7 N -0.582 5.582 8 C 0.508 3.492 9 O -0.538 6.538 10 C 0.473 3.527 11 O -0.377 6.377 12 N -0.635 5.635 13 C 0.366 3.634 14 C -0.347 4.347 15 C -0.036 4.036 16 C -0.299 4.299 17 C 0.272 3.728 18 C -0.424 4.424 19 H 0.084 0.916 20 C 0.062 3.938 21 N -0.665 5.665 22 Si 0.898 3.102 23 H -0.272 1.272 24 H -0.277 1.277 25 H -0.263 1.263 26 N -0.474 5.474 27 C 0.113 3.887 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.171 0.829 36 H 0.057 0.943 37 H 0.412 0.588 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.271 0.729 42 H 0.067 0.933 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.266 -0.923 -1.422 12.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.126 4.126 3 H 0.092 0.908 4 C -0.154 4.154 5 C -0.167 4.167 6 C -0.077 4.077 7 N -0.315 5.315 8 C 0.292 3.708 9 O -0.415 6.415 10 C 0.251 3.749 11 O -0.242 6.242 12 N -0.282 5.282 13 C 0.129 3.871 14 C -0.373 4.373 15 C -0.060 4.060 16 C -0.322 4.322 17 C 0.147 3.853 18 C -0.454 4.454 19 H 0.102 0.898 20 C -0.167 4.167 21 N -0.284 5.284 22 Si 0.722 3.278 23 H -0.197 1.197 24 H -0.202 1.202 25 H -0.187 1.187 26 N -0.193 5.193 27 C -0.010 4.010 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.186 0.814 36 H 0.075 0.925 37 H 0.248 0.752 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.938 -1.276 -2.522 13.244 hybrid contribution 0.380 0.093 0.424 0.577 sum -12.559 -1.183 -2.098 12.788 Atomic orbital electron populations 1.21761 0.94520 1.01923 1.01931 1.21500 0.95697 1.00275 0.95149 0.90772 1.21638 0.96288 1.00368 0.97082 1.21752 0.94705 1.01899 0.98311 1.23347 1.06659 0.95475 0.82263 1.47951 1.06115 1.58885 1.18553 1.20646 0.88869 0.77884 0.83428 1.90679 1.75673 1.47850 1.27336 1.20196 0.86726 0.81588 0.86409 1.90710 1.71907 1.38715 1.22910 1.43027 1.05510 1.67905 1.11779 1.18546 0.82268 0.94153 0.92180 1.20520 0.94575 1.23465 0.98703 1.20592 0.93595 0.95810 0.96041 1.21667 0.99139 1.16133 0.95287 1.18357 0.86244 0.88138 0.92563 1.19592 0.96252 1.34872 0.94717 0.89833 1.26129 0.94924 0.95717 0.99892 1.70303 1.03072 1.24011 1.31030 0.86472 0.80036 0.79633 0.81650 1.19685 1.20227 1.18717 1.68624 1.12399 1.21304 1.16973 1.21723 0.79597 1.00778 0.98886 0.92479 0.92368 0.92543 0.92011 0.91984 0.90692 0.91503 0.81363 0.92469 0.75192 0.88694 0.88337 0.88347 0.91754 0.91489 0.89182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.20 37.16 0.34 -0.85 16 2 C -0.11 -1.14 2.87 -90.51 -0.26 -1.40 16 3 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 4 C -0.12 -1.21 5.17 -26.69 -0.14 -1.35 16 5 C -0.13 -1.64 6.06 -26.83 -0.16 -1.80 16 6 C 0.04 0.64 6.24 -3.94 -0.02 0.61 16 7 N -0.58 -8.93 2.98 -173.57 -0.52 -9.45 16 8 C 0.51 9.15 7.74 -11.62 -0.09 9.06 16 9 O -0.54 -10.17 15.96 5.49 0.09 -10.08 16 10 C 0.47 9.69 7.73 -11.62 -0.09 9.60 16 11 O -0.38 -8.56 8.90 5.49 0.05 -8.51 16 12 N -0.63 -13.07 5.36 -11.83 -0.06 -13.13 16 13 C 0.37 8.78 7.42 -155.09 -1.15 7.63 16 14 C -0.35 -7.69 9.95 -38.88 -0.39 -8.08 16 15 C -0.04 -0.80 10.15 -39.39 -0.40 -1.20 16 16 C -0.30 -7.27 9.83 -38.65 -0.38 -7.65 16 17 C 0.27 7.33 6.55 -84.99 -0.56 6.78 16 18 C -0.42 -11.11 9.13 -37.73 -0.34 -11.46 16 19 H 0.08 2.06 7.85 -52.49 -0.41 1.65 16 20 C 0.06 1.53 5.49 -17.34 -0.10 1.44 16 21 N -0.67 -16.89 9.05 55.55 0.50 -16.39 16 22 Si 0.90 18.22 29.56 -169.99 -5.03 13.20 16 23 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 24 H -0.28 -5.52 7.11 56.52 0.40 -5.11 16 25 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 26 N -0.47 -12.72 5.74 -10.28 -0.06 -12.78 16 27 C 0.11 1.41 5.70 -3.71 -0.02 1.38 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.17 3.09 3.77 -56.80 -0.21 2.88 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.41 7.32 8.21 -40.82 -0.33 6.98 16 38 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 39 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 40 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 41 H 0.27 6.30 8.29 -40.82 -0.34 5.96 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.09 1.19 7.05 -51.93 -0.37 0.83 16 LS Contribution 348.89 15.07 5.26 5.26 Total: -1.00 -29.34 348.89 -9.48 -38.82 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -5.96 Total: 10.36 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: -3.76 Total: 2.70 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: -0.14 Total: -51.74 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: 0.14 Total: -18.59 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.03 Total: 13.20 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.34 -9.48 -38.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882474077.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.499 kcal (2) G-P(sol) polarization free energy of solvation -29.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds