Wall clock time and date at job start Tue Mar 31 2020 12:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.52065 * 2 1 4 4 C 1.53035 * 109.49520 * 239.92127 * 2 1 3 5 5 C 1.53046 * 109.53696 * 178.68166 * 4 2 1 6 6 C 1.52757 * 109.38116 * 61.24092 * 5 4 2 7 7 N 1.46925 * 109.00759 * 305.58826 * 6 5 4 8 8 C 1.34779 * 120.63116 * 233.58482 * 7 6 5 9 9 O 1.21355 * 119.99927 * 186.58416 * 8 7 6 10 10 C 1.49367 * 119.99928 * 6.57485 * 8 7 6 11 11 O 1.21354 * 119.99739 * 6.72114 * 10 8 7 12 12 N 1.34781 * 119.99872 * 186.71281 * 10 8 7 13 13 C 1.39114 * 119.99522 * 185.03645 * 12 10 8 14 14 C 1.39705 * 119.57515 * 174.79760 * 13 12 10 15 15 C 1.38649 * 119.49532 * 179.97438 * 14 13 12 16 16 C 1.38352 * 118.67039 * 359.73421 * 15 14 13 17 17 C 1.40596 * 119.13406 * 0.53073 * 16 15 14 18 18 C 1.41338 * 119.78715 * 179.73086 * 17 16 15 19 19 H 1.07996 * 119.99927 * 354.54062 * 18 17 16 20 20 C 1.40028 * 119.99890 * 174.53321 * 18 17 16 21 21 N 1.30745 * 120.00254 * 5.02526 * 20 18 17 22 22 Si 1.86800 * 119.99703 * 185.02011 * 20 18 17 23 23 H 1.48502 * 109.47056 * 95.00664 * 22 20 18 24 24 H 1.48507 * 109.47187 * 215.00176 * 22 20 18 25 25 H 1.48490 * 109.47478 * 335.00311 * 22 20 18 26 26 N 1.31931 * 119.57919 * 354.77501 * 13 12 10 27 27 C 1.46932 * 118.74109 * 53.31141 * 7 6 5 28 28 H 1.08999 * 109.47526 * 299.92009 * 1 2 3 29 29 H 1.09002 * 109.47345 * 59.91610 * 1 2 3 30 30 H 1.09002 * 109.47591 * 179.91460 * 1 2 3 31 31 H 1.08991 * 109.46555 * 298.70395 * 4 2 1 32 32 H 1.09003 * 109.45843 * 58.66655 * 4 2 1 33 33 H 1.08999 * 109.49843 * 181.31902 * 5 4 2 34 34 H 1.09007 * 109.49663 * 301.41482 * 5 4 2 35 35 H 1.08999 * 109.50705 * 185.70759 * 6 5 4 36 36 H 1.09002 * 109.43194 * 65.42448 * 6 5 4 37 37 H 0.96999 * 119.99981 * 5.03108 * 12 10 8 38 38 H 1.08000 * 120.25528 * 359.96042 * 14 13 12 39 39 H 1.08000 * 120.66880 * 179.97438 * 15 14 13 40 40 H 1.07997 * 120.43397 * 180.28881 * 16 15 14 41 41 H 0.96993 * 120.00157 * 179.97438 * 21 20 18 42 42 H 1.09005 * 109.58569 * 66.42664 * 27 7 6 43 43 H 1.08998 * 109.58775 * 186.71160 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0407 -0.7230 -1.2483 5 6 3.5708 -0.6949 -1.2661 6 6 4.1055 -1.4215 -0.0333 7 7 3.5046 -0.8291 1.1695 8 6 4.2811 -0.3856 2.1778 9 8 3.7738 -0.0090 3.2139 10 6 5.7662 -0.3577 2.0201 11 8 6.2672 -0.6175 0.9458 12 7 6.5497 -0.0439 3.0710 13 6 7.9242 0.0847 2.8997 14 6 8.7147 0.5163 3.9677 15 6 10.0846 0.6433 3.7954 16 6 10.6304 0.3310 2.5630 17 6 9.7810 -0.0927 1.5258 18 6 10.3232 -0.4099 0.2596 19 1 11.3721 -0.2429 0.0642 20 6 9.5003 -0.9408 -0.7412 21 7 8.2133 -1.0516 -0.5390 22 14 10.2413 -1.4906 -2.3654 23 1 10.5189 -2.9485 -2.3146 24 1 9.2862 -1.2067 -3.4666 25 1 11.5077 -0.7537 -2.6064 26 7 8.4646 -0.2029 1.7310 27 6 2.0412 -0.7238 1.2495 28 1 -0.3634 0.5126 0.8907 29 1 -0.3634 0.5151 -0.8892 30 1 -0.3634 -1.0276 -0.0015 31 1 1.6967 -1.7571 -1.2354 32 1 1.6581 -0.2243 -2.1389 33 1 3.9334 -1.1895 -2.1672 34 1 3.9159 0.3390 -1.2541 35 1 5.1895 -1.3159 0.0099 36 1 3.8412 -2.4774 -0.0917 37 1 6.1551 0.0923 3.9465 38 1 8.2623 0.7493 4.9203 39 1 10.7135 0.9758 4.6079 40 1 11.6944 0.4152 2.3987 41 1 7.6433 -1.4190 -1.2325 42 1 1.6052 -1.7217 1.2979 43 1 1.7636 -0.1602 2.1402 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882474077.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:34 Heat of formation + Delta-G solvation = -17.823025 kcal Electronic energy + Delta-G solvation = -27224.268399 eV Core-core repulsion = 23463.035471 eV Total energy + Delta-G solvation = -3761.232928 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.04290 -40.51784 -39.16603 -38.71669 -36.24470 -35.07791 -34.45020 -32.83899 -32.26475 -31.08935 -28.27995 -27.58325 -27.01674 -25.03712 -23.46656 -23.26078 -22.61477 -21.25102 -20.56156 -19.57512 -18.39103 -18.20811 -17.65710 -16.84556 -16.44935 -16.29760 -16.25731 -15.99667 -15.58925 -15.45916 -15.20512 -14.99778 -14.65442 -14.47332 -14.09846 -13.76857 -13.72155 -13.55737 -13.09922 -12.89503 -12.74647 -12.72098 -12.54715 -12.36640 -12.28939 -12.03636 -11.81849 -11.74567 -11.66616 -11.54868 -11.33420 -10.91350 -10.12900 -9.92623 -9.79077 -9.10138 -8.92359 -8.08759 -6.40984 0.31789 1.02773 1.27051 1.33760 1.44929 1.55699 1.56916 2.29292 2.31157 2.49028 2.98410 3.31369 3.75052 3.83404 3.94217 4.01642 4.10541 4.31548 4.32655 4.42145 4.57309 4.63133 4.68319 4.77021 4.80811 4.85032 4.88030 4.92465 4.94845 5.06871 5.09113 5.16182 5.23090 5.29512 5.36470 5.43972 5.48660 5.64062 5.80033 5.90382 6.00694 6.12915 6.28023 6.48228 6.72588 6.81788 7.04998 7.28392 8.24436 8.56688 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013439 B = 0.004742 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.009415 B = 5902.895699 C = 7825.791304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.103 4.103 3 H 0.056 0.944 4 C -0.109 4.109 5 C -0.124 4.124 6 C 0.043 3.957 7 N -0.573 5.573 8 C 0.512 3.488 9 O -0.551 6.551 10 C 0.463 3.537 11 O -0.400 6.400 12 N -0.631 5.631 13 C 0.347 3.653 14 C -0.343 4.343 15 C -0.033 4.033 16 C -0.321 4.321 17 C 0.238 3.762 18 C -0.460 4.460 19 H 0.086 0.914 20 C 0.018 3.982 21 N -0.692 5.692 22 Si 0.973 3.027 23 H -0.268 1.268 24 H -0.269 1.269 25 H -0.260 1.260 26 N -0.503 5.503 27 C 0.109 3.891 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.044 0.956 35 H 0.138 0.862 36 H 0.074 0.926 37 H 0.424 0.576 38 H 0.128 0.872 39 H 0.138 0.862 40 H 0.108 0.892 41 H 0.275 0.725 42 H 0.089 0.911 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.842 -1.368 -1.816 14.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.122 4.122 3 H 0.075 0.925 4 C -0.147 4.147 5 C -0.162 4.162 6 C -0.078 4.078 7 N -0.305 5.305 8 C 0.294 3.706 9 O -0.430 6.430 10 C 0.242 3.758 11 O -0.266 6.266 12 N -0.280 5.280 13 C 0.109 3.891 14 C -0.368 4.368 15 C -0.057 4.057 16 C -0.344 4.344 17 C 0.113 3.887 18 C -0.491 4.491 19 H 0.104 0.896 20 C -0.208 4.208 21 N -0.311 5.311 22 Si 0.795 3.205 23 H -0.193 1.193 24 H -0.194 1.194 25 H -0.184 1.184 26 N -0.223 5.223 27 C -0.012 4.012 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.063 0.937 35 H 0.155 0.845 36 H 0.093 0.907 37 H 0.262 0.738 38 H 0.146 0.854 39 H 0.156 0.844 40 H 0.126 0.874 41 H 0.086 0.914 42 H 0.107 0.893 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.553 -1.718 -2.901 14.938 hybrid contribution 0.826 0.252 0.644 1.077 sum -13.727 -1.466 -2.257 13.988 Atomic orbital electron populations 1.21718 0.92159 1.03002 1.02625 1.21478 0.97517 0.98986 0.94253 0.92497 1.21614 0.94016 1.01504 0.97553 1.21708 0.96760 1.00239 0.97535 1.23203 1.04904 0.96737 0.82956 1.48055 1.07368 1.57366 1.17752 1.20137 0.87710 0.78653 0.84090 1.90667 1.75426 1.49066 1.27864 1.20761 0.88030 0.80935 0.86047 1.90769 1.72980 1.39208 1.23671 1.43033 1.04521 1.67774 1.12633 1.18977 0.83723 0.94148 0.92233 1.20948 0.94737 1.21694 0.99448 1.21036 0.94109 0.94349 0.96243 1.21860 0.99563 1.17076 0.95935 1.18834 0.87019 0.89024 0.93801 1.19901 0.96779 1.36734 0.95693 0.89613 1.26911 0.95279 0.95470 1.03104 1.70431 1.04136 1.24307 1.32234 0.85328 0.79160 0.78989 0.77039 1.19306 1.19406 1.18413 1.68584 1.12671 1.22448 1.18611 1.22005 0.77361 1.02201 0.99677 0.92254 0.91303 0.91243 0.90429 0.90389 0.89668 0.93736 0.84537 0.90725 0.73818 0.85412 0.84391 0.87396 0.91404 0.89324 0.89939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.20 71.98 0.66 -1.20 16 2 C -0.10 -1.99 2.87 -10.72 -0.03 -2.02 16 3 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 4 C -0.11 -2.01 5.17 30.62 0.16 -1.85 16 5 C -0.12 -3.07 6.06 30.53 0.19 -2.89 16 6 C 0.04 1.25 6.24 86.22 0.54 1.79 16 7 N -0.57 -17.35 2.98 -821.41 -2.45 -19.79 16 8 C 0.51 18.58 7.74 87.24 0.68 19.25 16 9 O -0.55 -20.77 15.96 -3.26 -0.05 -20.82 16 10 C 0.46 19.58 7.73 87.24 0.67 20.26 16 11 O -0.40 -18.96 8.90 -3.26 -0.03 -18.99 16 12 N -0.63 -26.41 5.36 -309.71 -1.66 -28.07 16 13 C 0.35 16.89 7.42 133.30 0.99 17.88 16 14 C -0.34 -14.87 9.95 22.72 0.23 -14.64 16 15 C -0.03 -1.43 10.15 22.40 0.23 -1.21 16 16 C -0.32 -15.82 9.83 22.87 0.22 -15.59 16 17 C 0.24 13.29 6.55 40.20 0.26 13.56 16 18 C -0.46 -25.04 9.13 23.47 0.21 -24.83 16 19 H 0.09 4.40 7.85 -2.91 -0.02 4.37 16 20 C 0.02 0.93 5.49 85.29 0.47 1.39 16 21 N -0.69 -36.43 9.05 21.84 0.20 -36.24 16 22 Si 0.97 38.18 29.56 68.60 2.03 40.21 16 23 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 24 H -0.27 -10.09 7.11 99.48 0.71 -9.39 16 25 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 26 N -0.50 -27.94 5.74 -186.42 -1.07 -29.01 16 27 C 0.11 2.53 5.70 86.36 0.49 3.02 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.14 5.20 3.77 -79.58 -0.30 4.90 16 36 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.42 15.06 8.21 -92.71 -0.76 14.30 16 38 H 0.13 4.61 8.06 -2.91 -0.02 4.58 16 39 H 0.14 4.76 8.06 -2.91 -0.02 4.73 16 40 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 41 H 0.27 13.25 8.29 -92.71 -0.77 12.48 16 42 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 43 H 0.08 2.08 7.05 -2.39 -0.02 2.06 16 Total: -1.00 -65.72 348.89 2.92 -62.79 By element: Atomic # 1 Polarization: 36.99 SS G_CDS: -0.01 Total: 36.97 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: 5.97 Total: 12.93 kcal Atomic # 7 Polarization: -108.12 SS G_CDS: -4.98 Total: -113.10 kcal Atomic # 8 Polarization: -39.73 SS G_CDS: -0.08 Total: -39.81 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 2.03 Total: 40.21 kcal Total: -65.72 2.92 -62.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882474077.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.969 kcal (2) G-P(sol) polarization free energy of solvation -65.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds