Wall clock time and date at job start Tue Mar 31 2020 12:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.51744 * 2 1 4 4 C 1.53037 * 109.49784 * 120.07818 * 2 1 3 5 5 C 1.53047 * 109.53592 * 181.31972 * 4 2 1 6 6 C 1.53192 * 109.30986 * 298.63419 * 5 4 2 7 7 N 1.46933 * 108.77696 * 54.63404 * 6 5 4 8 8 C 1.34777 * 120.62457 * 126.36274 * 7 6 5 9 9 O 1.21363 * 119.99163 * 173.04252 * 8 7 6 10 10 C 1.49361 * 120.00594 * 353.04679 * 8 7 6 11 11 O 1.21355 * 119.99911 * 353.52891 * 10 8 7 12 12 N 1.34779 * 120.00204 * 173.52738 * 10 8 7 13 13 C 1.39109 * 120.00043 * 184.70238 * 12 10 8 14 14 C 1.39715 * 119.57773 * 176.14131 * 13 12 10 15 15 C 1.38650 * 119.49114 * 180.23269 * 14 13 12 16 16 C 1.38348 * 118.67332 * 359.47015 * 15 14 13 17 17 C 1.40602 * 119.13471 * 0.27728 * 16 15 14 18 18 C 1.41329 * 119.78270 * 179.97438 * 17 16 15 19 19 H 1.07995 * 120.00420 * 0.02562 * 18 17 16 20 20 C 1.40027 * 119.99730 * 179.97438 * 18 17 16 21 21 N 1.30747 * 120.00355 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00207 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46915 * 60.00220 * 22 20 18 24 24 H 1.48497 * 109.47358 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47092 * 300.00745 * 22 20 18 26 26 N 1.31937 * 119.58199 * 355.83767 * 13 12 10 27 27 C 1.46924 * 118.73695 * 306.64708 * 7 6 5 28 28 H 1.09001 * 109.46699 * 299.91611 * 1 2 3 29 29 H 1.08994 * 109.47193 * 59.92020 * 1 2 3 30 30 H 1.09003 * 109.46808 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46138 * 61.29912 * 4 2 1 32 32 H 1.08997 * 109.46380 * 301.33691 * 4 2 1 33 33 H 1.09002 * 109.49438 * 178.68869 * 5 4 2 34 34 H 1.08997 * 109.52694 * 58.60278 * 5 4 2 35 35 H 1.09001 * 109.58988 * 294.84998 * 6 5 4 36 36 H 1.08998 * 109.58987 * 174.42370 * 6 5 4 37 37 H 0.96998 * 119.99373 * 4.69767 * 12 10 8 38 38 H 1.08002 * 120.24993 * 359.97438 * 14 13 12 39 39 H 1.08002 * 120.66393 * 179.74994 * 15 14 13 40 40 H 1.07990 * 120.43206 * 180.30339 * 16 15 14 41 41 H 0.96997 * 120.00142 * 179.97438 * 21 20 18 42 42 H 1.09000 * 109.58432 * 173.14110 * 27 7 6 43 43 H 1.09002 * 109.58516 * 293.56397 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0408 -0.7230 1.2484 5 6 3.5709 -0.6948 1.2660 6 6 4.1053 -1.4265 0.0308 7 7 3.5046 -0.8291 -1.1697 8 6 4.2812 -0.3855 -2.1779 9 8 3.7738 -0.0110 -3.2149 10 6 5.7660 -0.3549 -2.0192 11 8 6.2670 -0.6169 -0.9454 12 7 6.5495 -0.0363 -3.0686 13 6 7.9338 -0.1027 -2.9485 14 6 8.7357 0.1508 -4.0642 15 6 10.1151 0.0794 -3.9437 16 6 10.6585 -0.2322 -2.7101 17 6 9.7983 -0.4714 -1.6239 18 6 10.3385 -0.7914 -0.3578 19 1 11.4089 -0.8511 -0.2268 20 6 9.4860 -1.0299 0.7272 21 7 8.1902 -0.9571 0.5688 22 14 10.2000 -1.4522 2.4009 23 1 11.0673 -0.3393 2.8641 24 1 9.0960 -1.6573 3.3726 25 1 11.0045 -2.6960 2.2964 26 7 8.4729 -0.3983 -1.7812 27 6 2.0415 -0.7187 -1.2471 28 1 -0.3633 0.5125 0.8908 29 1 -0.3633 0.5150 -0.8892 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6968 -1.7572 1.2353 32 1 1.6582 -0.2244 2.1389 33 1 3.9335 -1.1896 2.1671 34 1 3.9165 0.3389 1.2543 35 1 3.8376 -2.4817 0.0867 36 1 5.1896 -1.3245 -0.0139 37 1 6.1480 0.2392 -3.9075 38 1 8.2844 0.3964 -5.0142 39 1 10.7529 0.2678 -4.7947 40 1 11.7293 -0.2906 -2.5830 41 1 7.5997 -1.1227 1.3203 42 1 1.7645 -0.1496 -2.1346 43 1 1.6021 -1.7149 -1.2974 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882474078.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:39 Heat of formation + Delta-G solvation = -0.892822 kcal Electronic energy + Delta-G solvation = -27228.938206 eV Core-core repulsion = 23468.439427 eV Total energy + Delta-G solvation = -3760.498779 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.59982 -38.95446 -37.69713 -37.25159 -34.62764 -33.55364 -32.98542 -31.77710 -30.41368 -29.26948 -27.20095 -26.09697 -25.55679 -23.57443 -22.23253 -21.71989 -21.00730 -19.98763 -19.18453 -17.89961 -16.83221 -16.65277 -16.07930 -15.44443 -15.16709 -14.75312 -14.65583 -14.51626 -14.27212 -14.14385 -13.74484 -13.64748 -13.21707 -12.93608 -12.82421 -12.63119 -12.22488 -12.08766 -12.01335 -11.77912 -11.20902 -11.17474 -11.06076 -11.03974 -10.89847 -10.73082 -10.54270 -10.46748 -10.34858 -10.01912 -9.82726 -9.12061 -8.64159 -8.50528 -8.06488 -7.31584 -7.10119 -6.25861 -4.48083 1.86715 2.72898 2.80832 3.06048 3.10850 3.13676 3.22136 3.89294 3.91846 3.99522 4.59934 4.70667 4.82588 4.83714 4.87453 5.12222 5.31444 5.40500 5.43181 5.56940 5.61993 5.70214 5.76267 5.92470 5.93739 6.01297 6.02922 6.03816 6.12421 6.28473 6.41127 6.45016 6.55021 6.58465 6.76861 6.80004 7.18281 7.34724 7.44062 7.51496 7.73511 7.82769 8.03554 8.14686 8.34750 8.60350 8.89960 8.98095 10.10386 10.37828 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013496 B = 0.004751 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.172357 B = 5891.988109 C = 7847.189812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.107 4.107 3 H 0.074 0.926 4 C -0.116 4.116 5 C -0.128 4.128 6 C 0.043 3.957 7 N -0.582 5.582 8 C 0.509 3.491 9 O -0.538 6.538 10 C 0.472 3.528 11 O -0.377 6.377 12 N -0.635 5.635 13 C 0.367 3.633 14 C -0.348 4.348 15 C -0.036 4.036 16 C -0.300 4.300 17 C 0.272 3.728 18 C -0.423 4.423 19 H 0.083 0.917 20 C 0.062 3.938 21 N -0.664 5.664 22 Si 0.898 3.102 23 H -0.267 1.267 24 H -0.278 1.278 25 H -0.267 1.267 26 N -0.474 5.474 27 C 0.113 3.887 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.171 0.829 37 H 0.412 0.588 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.272 0.728 42 H 0.090 0.910 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.309 -0.380 1.602 12.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.126 4.126 3 H 0.092 0.908 4 C -0.154 4.154 5 C -0.166 4.166 6 C -0.078 4.078 7 N -0.315 5.315 8 C 0.292 3.708 9 O -0.416 6.416 10 C 0.250 3.750 11 O -0.242 6.242 12 N -0.282 5.282 13 C 0.129 3.871 14 C -0.373 4.373 15 C -0.060 4.060 16 C -0.323 4.323 17 C 0.147 3.853 18 C -0.454 4.454 19 H 0.101 0.899 20 C -0.167 4.167 21 N -0.284 5.284 22 Si 0.722 3.278 23 H -0.192 1.192 24 H -0.203 1.203 25 H -0.192 1.192 26 N -0.193 5.193 27 C -0.010 4.010 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.186 0.814 37 H 0.248 0.752 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.084 0.916 42 H 0.108 0.892 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.998 -0.598 2.739 13.297 hybrid contribution 0.385 0.106 -0.413 0.574 sum -12.612 -0.492 2.327 12.835 Atomic orbital electron populations 1.21759 0.94492 1.01936 1.01932 1.21427 0.95717 1.00303 0.95194 0.90800 1.21639 0.96293 1.00376 0.97072 1.21825 0.94688 1.01828 0.98303 1.23444 1.06675 0.95385 0.82247 1.47942 1.06116 1.58788 1.18665 1.20652 0.88865 0.77875 0.83421 1.90680 1.75683 1.47994 1.27223 1.20197 0.86733 0.81710 0.86314 1.90718 1.71875 1.39239 1.22331 1.43030 1.04699 1.65599 1.14909 1.18549 0.82070 0.94621 0.91878 1.20516 0.94033 1.25283 0.97509 1.20588 0.93588 0.95658 0.96176 1.21660 0.98913 1.17082 0.94634 1.18340 0.86208 0.88263 0.92473 1.19553 0.94263 1.39424 0.92142 0.89898 1.26131 0.94994 0.95176 1.00395 1.70288 1.02226 1.25181 1.30660 0.86552 0.79550 0.79880 0.81813 1.19168 1.20312 1.19156 1.68620 1.12510 1.20055 1.18135 1.21628 0.79625 1.00807 0.98892 0.92365 0.92471 0.92536 0.92007 0.91989 0.90732 0.91484 0.92444 0.81356 0.75174 0.88705 0.88346 0.88362 0.91648 0.89199 0.91517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.20 37.16 0.34 -0.84 16 2 C -0.11 -1.14 2.86 -90.73 -0.26 -1.40 16 3 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 4 C -0.12 -1.21 5.17 -26.69 -0.14 -1.35 16 5 C -0.13 -1.63 6.08 -26.61 -0.16 -1.79 16 6 C 0.04 0.64 6.27 -3.71 -0.02 0.62 16 7 N -0.58 -8.94 2.98 -173.57 -0.52 -9.46 16 8 C 0.51 9.15 7.74 -11.63 -0.09 9.06 16 9 O -0.54 -10.17 15.94 5.49 0.09 -10.08 16 10 C 0.47 9.69 7.73 -11.63 -0.09 9.60 16 11 O -0.38 -8.53 8.85 5.49 0.05 -8.48 16 12 N -0.63 -13.07 5.37 -11.83 -0.06 -13.14 16 13 C 0.37 8.79 7.43 -155.09 -1.15 7.64 16 14 C -0.35 -7.71 9.95 -38.88 -0.39 -8.10 16 15 C -0.04 -0.79 10.15 -39.39 -0.40 -1.19 16 16 C -0.30 -7.29 9.83 -38.65 -0.38 -7.67 16 17 C 0.27 7.33 6.55 -85.00 -0.56 6.78 16 18 C -0.42 -11.09 9.14 -37.74 -0.34 -11.44 16 19 H 0.08 2.04 7.85 -52.49 -0.41 1.62 16 20 C 0.06 1.52 5.50 -17.34 -0.10 1.43 16 21 N -0.66 -16.87 8.98 55.55 0.50 -16.37 16 22 Si 0.90 18.21 29.56 -169.99 -5.02 13.18 16 23 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 24 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 25 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 26 N -0.47 -12.71 5.73 -10.28 -0.06 -12.77 16 27 C 0.11 1.41 5.67 -3.94 -0.02 1.39 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.17 3.11 3.78 -56.78 -0.21 2.89 16 37 H 0.41 7.34 8.18 -40.82 -0.33 7.01 16 38 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 39 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 40 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 41 H 0.27 6.35 8.29 -40.82 -0.34 6.01 16 42 H 0.09 1.19 7.06 -51.93 -0.37 0.82 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 348.74 15.07 5.26 5.26 Total: -1.00 -29.24 348.74 -9.49 -38.73 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -5.96 Total: 10.41 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: -3.76 Total: 2.72 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: -0.14 Total: -51.74 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: 0.14 Total: -18.56 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.02 Total: 13.18 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.24 -9.49 -38.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882474078.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.840 kcal (2) G-P(sol) polarization free energy of solvation -29.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds