Wall clock time and date at job start Tue Mar 31 2020 12:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.51744 * 2 1 4 4 C 1.53037 * 109.49784 * 120.07818 * 2 1 3 5 5 C 1.53047 * 109.53592 * 181.31972 * 4 2 1 6 6 C 1.53192 * 109.30986 * 298.63419 * 5 4 2 7 7 N 1.46933 * 108.77696 * 54.63404 * 6 5 4 8 8 C 1.34777 * 120.62457 * 126.36274 * 7 6 5 9 9 O 1.21363 * 119.99163 * 173.04252 * 8 7 6 10 10 C 1.49361 * 120.00594 * 353.04679 * 8 7 6 11 11 O 1.21355 * 119.99911 * 353.52891 * 10 8 7 12 12 N 1.34779 * 120.00204 * 173.52738 * 10 8 7 13 13 C 1.39109 * 120.00043 * 184.70238 * 12 10 8 14 14 C 1.39715 * 119.57773 * 176.14131 * 13 12 10 15 15 C 1.38650 * 119.49114 * 180.23269 * 14 13 12 16 16 C 1.38348 * 118.67332 * 359.47015 * 15 14 13 17 17 C 1.40602 * 119.13471 * 0.27728 * 16 15 14 18 18 C 1.41329 * 119.78270 * 179.97438 * 17 16 15 19 19 H 1.07995 * 120.00420 * 0.02562 * 18 17 16 20 20 C 1.40027 * 119.99730 * 179.97438 * 18 17 16 21 21 N 1.30747 * 120.00355 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00207 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46915 * 60.00220 * 22 20 18 24 24 H 1.48497 * 109.47358 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47092 * 300.00745 * 22 20 18 26 26 N 1.31937 * 119.58199 * 355.83767 * 13 12 10 27 27 C 1.46924 * 118.73695 * 306.64708 * 7 6 5 28 28 H 1.09001 * 109.46699 * 299.91611 * 1 2 3 29 29 H 1.08994 * 109.47193 * 59.92020 * 1 2 3 30 30 H 1.09003 * 109.46808 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46138 * 61.29912 * 4 2 1 32 32 H 1.08997 * 109.46380 * 301.33691 * 4 2 1 33 33 H 1.09002 * 109.49438 * 178.68869 * 5 4 2 34 34 H 1.08997 * 109.52694 * 58.60278 * 5 4 2 35 35 H 1.09001 * 109.58988 * 294.84998 * 6 5 4 36 36 H 1.08998 * 109.58987 * 174.42370 * 6 5 4 37 37 H 0.96998 * 119.99373 * 4.69767 * 12 10 8 38 38 H 1.08002 * 120.24993 * 359.97438 * 14 13 12 39 39 H 1.08002 * 120.66393 * 179.74994 * 15 14 13 40 40 H 1.07990 * 120.43206 * 180.30339 * 16 15 14 41 41 H 0.96997 * 120.00142 * 179.97438 * 21 20 18 42 42 H 1.09000 * 109.58432 * 173.14110 * 27 7 6 43 43 H 1.09002 * 109.58516 * 293.56397 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0408 -0.7230 1.2484 5 6 3.5709 -0.6948 1.2660 6 6 4.1053 -1.4265 0.0308 7 7 3.5046 -0.8291 -1.1697 8 6 4.2812 -0.3855 -2.1779 9 8 3.7738 -0.0110 -3.2149 10 6 5.7660 -0.3549 -2.0192 11 8 6.2670 -0.6169 -0.9454 12 7 6.5495 -0.0363 -3.0686 13 6 7.9338 -0.1027 -2.9485 14 6 8.7357 0.1508 -4.0642 15 6 10.1151 0.0794 -3.9437 16 6 10.6585 -0.2322 -2.7101 17 6 9.7983 -0.4714 -1.6239 18 6 10.3385 -0.7914 -0.3578 19 1 11.4089 -0.8511 -0.2268 20 6 9.4860 -1.0299 0.7272 21 7 8.1902 -0.9571 0.5688 22 14 10.2000 -1.4522 2.4009 23 1 11.0673 -0.3393 2.8641 24 1 9.0960 -1.6573 3.3726 25 1 11.0045 -2.6960 2.2964 26 7 8.4729 -0.3983 -1.7812 27 6 2.0415 -0.7187 -1.2471 28 1 -0.3633 0.5125 0.8908 29 1 -0.3633 0.5150 -0.8892 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6968 -1.7572 1.2353 32 1 1.6582 -0.2244 2.1389 33 1 3.9335 -1.1896 2.1671 34 1 3.9165 0.3389 1.2543 35 1 3.8376 -2.4817 0.0867 36 1 5.1896 -1.3245 -0.0139 37 1 6.1480 0.2392 -3.9075 38 1 8.2844 0.3964 -5.0142 39 1 10.7529 0.2678 -4.7947 40 1 11.7293 -0.2906 -2.5830 41 1 7.5997 -1.1227 1.3203 42 1 1.7645 -0.1496 -2.1346 43 1 1.6021 -1.7149 -1.2974 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882474078.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:38 Heat of formation + Delta-G solvation = -17.284562 kcal Electronic energy + Delta-G solvation = -27229.649005 eV Core-core repulsion = 23468.439427 eV Total energy + Delta-G solvation = -3761.209578 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.04107 -40.51716 -39.16704 -38.71344 -36.24532 -35.07759 -34.45130 -32.82186 -32.26007 -31.08678 -28.28010 -27.58109 -27.01246 -25.04012 -23.46560 -23.26046 -22.61686 -21.24746 -20.54972 -19.57898 -18.40181 -18.20703 -17.62180 -16.86647 -16.45607 -16.29170 -16.26041 -15.98686 -15.56980 -15.49076 -15.21046 -14.96093 -14.64397 -14.45712 -14.09466 -13.77854 -13.70675 -13.55697 -13.10052 -12.86238 -12.74747 -12.71692 -12.56995 -12.36895 -12.28541 -12.03721 -11.82799 -11.76658 -11.69177 -11.51886 -11.32965 -10.90226 -10.13129 -9.92588 -9.79018 -9.09667 -8.92239 -8.07527 -6.40931 0.31882 1.03506 1.27231 1.34296 1.44975 1.54654 1.57669 2.29528 2.31766 2.48884 2.99389 3.31188 3.75257 3.83966 3.94146 4.02345 4.10311 4.31463 4.32686 4.42286 4.57258 4.63302 4.68494 4.77212 4.81036 4.85027 4.88133 4.92472 4.95030 5.07124 5.09315 5.16244 5.23004 5.29446 5.36587 5.43980 5.48804 5.64227 5.80373 5.90584 6.00729 6.12752 6.28363 6.48264 6.72426 6.81810 7.05214 7.28701 8.24784 8.57058 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013496 B = 0.004751 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.172357 B = 5891.988109 C = 7847.189812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.103 4.103 3 H 0.057 0.943 4 C -0.110 4.110 5 C -0.124 4.124 6 C 0.042 3.958 7 N -0.573 5.573 8 C 0.512 3.488 9 O -0.551 6.551 10 C 0.463 3.537 11 O -0.399 6.399 12 N -0.631 5.631 13 C 0.347 3.653 14 C -0.344 4.344 15 C -0.033 4.033 16 C -0.322 4.322 17 C 0.239 3.761 18 C -0.460 4.460 19 H 0.086 0.914 20 C 0.018 3.982 21 N -0.691 5.691 22 Si 0.973 3.027 23 H -0.265 1.265 24 H -0.269 1.269 25 H -0.264 1.264 26 N -0.503 5.503 27 C 0.109 3.891 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.046 0.954 35 H 0.073 0.927 36 H 0.138 0.862 37 H 0.424 0.576 38 H 0.128 0.872 39 H 0.138 0.862 40 H 0.108 0.892 41 H 0.275 0.725 42 H 0.082 0.918 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.897 -0.759 2.031 14.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.122 4.122 3 H 0.076 0.924 4 C -0.147 4.147 5 C -0.162 4.162 6 C -0.078 4.078 7 N -0.306 5.306 8 C 0.294 3.706 9 O -0.430 6.430 10 C 0.242 3.758 11 O -0.265 6.265 12 N -0.280 5.280 13 C 0.110 3.890 14 C -0.369 4.369 15 C -0.057 4.057 16 C -0.345 4.345 17 C 0.113 3.887 18 C -0.491 4.491 19 H 0.104 0.896 20 C -0.208 4.208 21 N -0.310 5.310 22 Si 0.794 3.206 23 H -0.190 1.190 24 H -0.193 1.193 25 H -0.188 1.188 26 N -0.223 5.223 27 C -0.012 4.012 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.154 0.846 37 H 0.262 0.738 38 H 0.146 0.854 39 H 0.156 0.844 40 H 0.126 0.874 41 H 0.086 0.914 42 H 0.101 0.899 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.623 -0.973 3.154 14.991 hybrid contribution 0.839 0.237 -0.648 1.086 sum -13.784 -0.735 2.506 14.030 Atomic orbital electron populations 1.21717 0.92149 1.02978 1.02651 1.21404 0.97516 0.99066 0.94243 0.92398 1.21616 0.94050 1.01462 0.97582 1.21777 0.96712 1.00267 0.97427 1.23296 1.04913 0.96578 0.83029 1.48045 1.07370 1.57282 1.17853 1.20145 0.87710 0.78649 0.84074 1.90668 1.75436 1.49201 1.27735 1.20761 0.88035 0.81068 0.85947 1.90777 1.72945 1.39692 1.23101 1.43036 1.03703 1.65544 1.15702 1.18979 0.83549 0.94527 0.91984 1.20943 0.94215 1.23510 0.98247 1.21031 0.94150 0.93970 0.96564 1.21854 0.99318 1.18146 0.95195 1.18819 0.86992 0.89100 0.93750 1.19880 0.94806 1.41285 0.93125 0.89584 1.26911 0.95288 0.94811 1.03788 1.70423 1.03268 1.25477 1.31820 0.85414 0.78808 0.79448 0.76923 1.18953 1.19299 1.18809 1.68581 1.12770 1.21195 1.19777 1.21908 0.77386 1.02175 0.99746 0.91265 0.92229 0.91306 0.90535 0.90337 0.89742 0.93512 0.90879 0.84550 0.73818 0.85430 0.84412 0.87411 0.91370 0.89926 0.89465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.20 71.98 0.66 -1.18 16 2 C -0.10 -1.97 2.86 -10.86 -0.03 -2.00 16 3 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 4 C -0.11 -2.00 5.17 30.62 0.16 -1.84 16 5 C -0.12 -3.04 6.08 30.67 0.19 -2.85 16 6 C 0.04 1.26 6.27 86.36 0.54 1.80 16 7 N -0.57 -17.38 2.98 -821.41 -2.45 -19.82 16 8 C 0.51 18.59 7.74 87.24 0.68 19.26 16 9 O -0.55 -20.75 15.94 -3.29 -0.05 -20.80 16 10 C 0.46 19.56 7.73 87.24 0.67 20.24 16 11 O -0.40 -18.89 8.85 -3.26 -0.03 -18.92 16 12 N -0.63 -26.43 5.37 -309.71 -1.66 -28.09 16 13 C 0.35 16.91 7.43 133.31 0.99 17.90 16 14 C -0.34 -14.90 9.95 22.73 0.23 -14.68 16 15 C -0.03 -1.43 10.15 22.39 0.23 -1.20 16 16 C -0.32 -15.86 9.83 22.87 0.22 -15.63 16 17 C 0.24 13.29 6.55 40.20 0.26 13.56 16 18 C -0.46 -25.01 9.14 23.46 0.21 -24.80 16 19 H 0.09 4.39 7.85 -2.91 -0.02 4.36 16 20 C 0.02 0.92 5.50 85.29 0.47 1.38 16 21 N -0.69 -36.34 8.98 21.84 0.20 -36.15 16 22 Si 0.97 38.11 29.56 68.60 2.03 40.14 16 23 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 24 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 25 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 26 N -0.50 -27.92 5.73 -186.43 -1.07 -28.99 16 27 C 0.11 2.54 5.67 86.22 0.49 3.03 16 28 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.14 5.22 3.78 -79.16 -0.30 4.92 16 37 H 0.42 15.10 8.18 -92.71 -0.76 14.34 16 38 H 0.13 4.60 8.06 -2.91 -0.02 4.58 16 39 H 0.14 4.75 8.06 -2.91 -0.02 4.73 16 40 H 0.11 4.91 8.06 -2.92 -0.02 4.89 16 41 H 0.28 13.31 8.29 -92.71 -0.77 12.54 16 42 H 0.08 2.08 7.06 -2.39 -0.02 2.06 16 43 H 0.09 1.71 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -65.45 348.74 2.92 -62.52 By element: Atomic # 1 Polarization: 37.15 SS G_CDS: -0.01 Total: 37.14 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: 5.97 Total: 12.97 kcal Atomic # 7 Polarization: -108.06 SS G_CDS: -4.98 Total: -113.05 kcal Atomic # 8 Polarization: -39.64 SS G_CDS: -0.08 Total: -39.72 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 2.03 Total: 40.14 kcal Total: -65.45 2.92 -62.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882474078.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.237 kcal (2) G-P(sol) polarization free energy of solvation -65.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds