Wall clock time and date at job start Tue Mar 31 2020 11:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47268 * 2 1 4 4 H 1.09001 * 109.47645 * 304.99971 * 3 2 1 5 5 C 1.50704 * 109.47409 * 185.00219 * 3 2 1 6 6 O 1.21279 * 119.99870 * 240.00455 * 5 3 2 7 7 N 1.34771 * 120.00189 * 59.99522 * 5 3 2 8 8 C 1.39261 * 120.00284 * 183.44225 * 7 5 3 9 9 C 1.39671 * 119.57602 * 339.08836 * 8 7 5 10 10 C 1.38659 * 119.49754 * 179.97438 * 9 8 7 11 11 C 1.38339 * 118.66667 * 359.97438 * 10 9 8 12 12 C 1.40577 * 119.13261 * 0.02562 * 11 10 9 13 13 C 1.41342 * 119.78753 * 179.97438 * 12 11 10 14 14 H 1.08006 * 119.99798 * 9.16358 * 13 12 11 15 15 C 1.40029 * 119.99966 * 189.16017 * 13 12 11 16 16 N 1.30741 * 119.99681 * 195.19921 * 15 13 12 17 17 Si 1.86802 * 119.99897 * 15.20003 * 15 13 12 18 18 H 1.48492 * 109.46982 * 269.99835 * 17 15 13 19 19 H 1.48497 * 109.46966 * 30.00144 * 17 15 13 20 20 H 1.48496 * 109.46966 * 149.99984 * 17 15 13 21 21 N 1.31914 * 119.57736 * 159.31395 * 8 7 5 22 22 N 1.46498 * 109.47372 * 65.00157 * 3 2 1 23 23 C 1.46767 * 124.35016 * 239.73073 * 22 3 2 24 24 C 1.54666 * 105.38139 * 162.84990 * 23 22 3 25 25 C 1.54622 * 101.68292 * 25.76448 * 24 23 22 26 26 C 1.34421 * 124.35128 * 60.02247 * 22 3 2 27 27 O 1.21280 * 124.93795 * 0.39069 * 26 22 3 28 28 H 1.08998 * 109.47521 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46924 * 300.00182 * 1 2 3 30 30 H 1.08998 * 109.47166 * 59.99923 * 1 2 3 31 31 H 1.08997 * 109.47433 * 240.00352 * 2 1 3 32 32 H 1.08998 * 109.47166 * 120.00077 * 2 1 3 33 33 H 0.97006 * 120.00017 * 3.45363 * 7 5 3 34 34 H 1.07996 * 120.25463 * 359.94816 * 9 8 7 35 35 H 1.08000 * 120.66401 * 179.97438 * 10 9 8 36 36 H 1.08005 * 120.43433 * 180.02562 * 11 10 9 37 37 H 0.96997 * 120.00803 * 354.93018 * 16 15 13 38 38 H 1.09002 * 110.24246 * 281.97668 * 23 22 3 39 39 H 1.09001 * 110.24802 * 43.97648 * 23 22 3 40 40 H 1.08999 * 111.18787 * 267.58725 * 24 23 22 41 41 H 1.09000 * 110.81687 * 143.77826 * 24 23 22 42 42 H 1.08998 * 110.48401 * 216.30717 * 25 24 23 43 43 H 1.08999 * 110.48674 * 93.67098 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 8 4.2216 1.9435 0.7477 7 7 4.1297 0.8911 -1.2031 8 6 5.5186 0.8285 -1.2842 9 6 6.2941 1.6931 -0.5083 10 6 7.6768 1.6290 -0.5899 11 6 8.2490 0.7030 -1.4436 12 6 7.4142 -0.1394 -2.1983 13 6 7.9841 -1.0901 -3.0753 14 1 9.0487 -1.2717 -3.0571 15 6 7.1685 -1.7967 -3.9677 16 7 7.6244 -2.8688 -4.5611 17 14 5.4294 -1.2074 -4.3104 18 1 4.4939 -1.8377 -3.3448 19 1 5.3696 0.2693 -4.1657 20 1 5.0422 -1.5852 -5.6933 21 7 6.0848 -0.0434 -2.0960 22 7 1.6525 2.0975 1.2518 23 6 0.8123 3.2982 1.3326 24 6 0.3192 3.3560 2.7974 25 6 1.4370 2.5828 3.5348 26 6 2.0254 1.6793 2.4737 27 8 2.7305 0.7174 2.6934 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.5854 0.5366 -1.9236 34 1 5.8204 2.4064 0.1499 35 1 8.2946 2.2888 0.0012 36 1 9.3231 0.6283 -1.5292 37 1 8.5497 -3.1335 -4.4408 38 1 1.3986 4.1855 1.0938 39 1 -0.0358 3.2115 0.6535 40 1 -0.6418 2.8541 2.9097 41 1 0.2623 4.3870 3.1466 42 1 1.0185 1.9921 4.3496 43 1 2.1930 3.2719 3.9112 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882474680.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:56 Heat of formation + Delta-G solvation = -36.432210 kcal Electronic energy + Delta-G solvation = -27107.369083 eV Core-core repulsion = 23345.329201 eV Total energy + Delta-G solvation = -3762.039883 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.01181 -39.66132 -38.01819 -36.40214 -35.05402 -34.53145 -33.43705 -31.23392 -31.02006 -29.68637 -27.74687 -27.25729 -25.26537 -22.78563 -22.28469 -22.10047 -21.69314 -20.21723 -19.09710 -18.30951 -17.62014 -17.14520 -16.41145 -16.09218 -15.56128 -15.09080 -14.86072 -14.51610 -14.44915 -14.11039 -13.78621 -13.71160 -13.40457 -13.16128 -13.05084 -12.85275 -12.76387 -12.51851 -12.27498 -12.06951 -11.84391 -11.79159 -11.43305 -11.31488 -11.12961 -11.06867 -10.89299 -10.21358 -9.95916 -9.76226 -9.65347 -9.33142 -9.06187 -8.68695 -8.48517 -7.85214 -7.46702 -7.20279 -4.73157 2.25385 2.54707 2.70084 2.74817 3.03648 3.39605 3.46858 3.61158 3.88356 4.17606 4.22118 4.34264 4.53184 4.57372 4.68025 4.70170 4.74133 4.88572 5.07114 5.18242 5.25296 5.33705 5.41468 5.49472 5.54219 5.57482 5.70350 5.76491 5.89144 5.92106 6.07451 6.12274 6.35262 6.50718 6.56194 6.61218 7.05401 7.17405 7.23152 7.46155 7.59451 7.66476 7.80746 8.13929 8.22181 8.33559 8.48265 8.68560 9.46145 9.99966 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019567 B = 0.004009 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.644587 B = 6982.147746 C = 7888.472695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.141 4.141 3 C 0.148 3.852 4 H 0.116 0.884 5 C 0.504 3.496 6 O -0.493 6.493 7 N -0.652 5.652 8 C 0.383 3.617 9 C -0.311 4.311 10 C -0.038 4.038 11 C -0.277 4.277 12 C 0.275 3.725 13 C -0.482 4.482 14 H 0.083 0.917 15 C 0.048 3.952 16 N -0.805 5.805 17 Si 1.143 2.857 18 H -0.287 1.287 19 H -0.281 1.281 20 H -0.327 1.327 21 N -0.594 5.594 22 N -0.607 5.607 23 C 0.104 3.896 24 C -0.129 4.129 25 C -0.154 4.154 26 C 0.524 3.476 27 O -0.511 6.511 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.405 0.595 34 H 0.142 0.858 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.284 0.716 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.099 0.901 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.703 11.619 8.717 23.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.179 4.179 3 C 0.041 3.959 4 H 0.134 0.866 5 C 0.288 3.712 6 O -0.366 6.366 7 N -0.297 5.297 8 C 0.152 3.848 9 C -0.335 4.335 10 C -0.062 4.062 11 C -0.299 4.299 12 C 0.150 3.850 13 C -0.514 4.514 14 H 0.101 0.899 15 C -0.173 4.173 16 N -0.427 5.427 17 Si 0.977 3.023 18 H -0.214 1.214 19 H -0.208 1.208 20 H -0.260 1.260 21 N -0.319 5.319 22 N -0.342 5.342 23 C -0.019 4.019 24 C -0.167 4.167 25 C -0.194 4.194 26 C 0.311 3.689 27 O -0.385 6.385 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.240 0.760 34 H 0.159 0.841 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.108 0.892 42 H 0.117 0.883 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -19.588 10.431 8.147 23.640 hybrid contribution 2.064 0.628 0.908 2.341 sum -17.524 11.059 9.055 22.613 Atomic orbital electron populations 1.21694 0.94465 1.02169 1.01719 1.21943 0.97120 0.93954 1.04906 1.20817 0.91503 0.95963 0.87653 0.86650 1.20783 0.90425 0.78549 0.81404 1.90604 1.63707 1.42929 1.39315 1.43185 1.05934 1.59215 1.21409 1.18086 0.82065 0.91398 0.93218 1.21698 0.93623 1.07588 1.10596 1.20936 0.94257 0.95908 0.95107 1.21620 0.99102 1.03242 1.05963 1.18181 0.85312 0.90400 0.91061 1.20656 0.96862 1.17991 1.15929 0.89855 1.27660 1.08231 0.90730 0.90712 1.70604 1.18226 1.17340 1.36558 0.82145 0.71516 0.76500 0.72183 1.21382 1.20820 1.25974 1.66158 1.13412 1.25351 1.26965 1.47909 1.52022 1.29129 1.05147 1.22140 0.94194 0.87577 0.97945 1.22596 0.98427 1.01835 0.93847 1.22312 0.99443 0.99538 0.98143 1.20738 0.79439 0.84698 0.83983 1.90754 1.36113 1.28136 1.83453 0.92134 0.92655 0.92528 0.89912 0.89480 0.76019 0.84072 0.87739 0.87744 0.90469 0.91002 0.90283 0.89975 0.89232 0.88286 0.87818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.80 37.15 0.36 -0.86 16 2 C -0.14 -1.67 5.30 -26.74 -0.14 -1.82 16 3 C 0.15 1.82 2.67 -69.08 -0.18 1.63 16 4 H 0.12 1.00 8.07 -51.93 -0.42 0.59 16 5 C 0.50 8.89 6.75 -10.99 -0.07 8.82 16 6 O -0.49 -10.39 11.53 -9.66 -0.11 -10.50 16 7 N -0.65 -12.49 5.24 -11.40 -0.06 -12.55 16 8 C 0.38 9.15 7.51 -154.98 -1.16 7.98 16 9 C -0.31 -7.38 8.89 -38.89 -0.35 -7.72 16 10 C -0.04 -0.87 10.15 -39.39 -0.40 -1.27 16 11 C -0.28 -6.88 9.83 -38.66 -0.38 -7.26 16 12 C 0.27 7.44 6.28 -85.00 -0.53 6.91 16 13 C -0.48 -13.42 9.52 -37.73 -0.36 -13.78 16 14 H 0.08 2.31 8.06 -52.48 -0.42 1.89 16 15 C 0.05 1.32 5.51 -17.34 -0.10 1.23 16 16 N -0.81 -22.14 13.65 55.55 0.76 -21.38 16 17 Si 1.14 27.49 25.95 -169.99 -4.41 23.08 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.28 -6.69 6.49 56.52 0.37 -6.33 16 20 H -0.33 -7.66 7.11 56.52 0.40 -7.26 16 21 N -0.59 -15.48 5.00 -10.26 -0.05 -15.54 16 22 N -0.61 -6.94 2.08 -166.04 -0.34 -7.28 16 23 C 0.10 0.72 7.31 -3.02 -0.02 0.70 16 24 C -0.13 -0.69 7.19 -25.00 -0.18 -0.87 16 25 C -0.15 -1.36 6.86 -26.75 -0.18 -1.54 16 26 C 0.52 7.32 6.69 -10.86 -0.07 7.24 16 27 O -0.51 -9.81 15.33 -9.66 -0.15 -9.96 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.46 7.75 -51.92 -0.40 0.06 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.96 7.50 -51.93 -0.39 0.57 16 32 H 0.09 1.32 6.65 -51.93 -0.35 0.97 16 33 H 0.40 6.64 8.29 -40.82 -0.34 6.31 16 34 H 0.14 3.31 5.18 -52.88 -0.27 3.04 16 35 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 36 H 0.10 2.41 8.06 -52.48 -0.42 1.99 16 37 H 0.28 7.50 8.73 -40.82 -0.36 7.14 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 351.22 15.07 5.29 5.29 Total: -1.00 -35.61 351.22 -8.85 -44.46 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -6.01 Total: 4.99 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: -3.77 Total: -0.61 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: 0.30 Total: -56.75 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.26 Total: -20.46 kcal Atomic # 14 Polarization: 27.49 SS G_CDS: -4.41 Total: 23.08 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.61 -8.85 -44.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882474680.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.028 kcal (2) G-P(sol) polarization free energy of solvation -35.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds