Wall clock time and date at job start Tue Mar 31 2020 11:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47268 * 2 1 4 4 H 1.09001 * 109.47645 * 304.99971 * 3 2 1 5 5 C 1.50704 * 109.47409 * 185.00219 * 3 2 1 6 6 O 1.21279 * 119.99870 * 240.00455 * 5 3 2 7 7 N 1.34771 * 120.00189 * 59.99522 * 5 3 2 8 8 C 1.39261 * 120.00284 * 183.44225 * 7 5 3 9 9 C 1.39671 * 119.57602 * 339.08836 * 8 7 5 10 10 C 1.38659 * 119.49754 * 179.97438 * 9 8 7 11 11 C 1.38339 * 118.66667 * 359.97438 * 10 9 8 12 12 C 1.40577 * 119.13261 * 0.02562 * 11 10 9 13 13 C 1.41342 * 119.78753 * 179.97438 * 12 11 10 14 14 H 1.08006 * 119.99798 * 9.16358 * 13 12 11 15 15 C 1.40029 * 119.99966 * 189.16017 * 13 12 11 16 16 N 1.30741 * 119.99681 * 195.19921 * 15 13 12 17 17 Si 1.86802 * 119.99897 * 15.20003 * 15 13 12 18 18 H 1.48492 * 109.46982 * 269.99835 * 17 15 13 19 19 H 1.48497 * 109.46966 * 30.00144 * 17 15 13 20 20 H 1.48496 * 109.46966 * 149.99984 * 17 15 13 21 21 N 1.31914 * 119.57736 * 159.31395 * 8 7 5 22 22 N 1.46498 * 109.47372 * 65.00157 * 3 2 1 23 23 C 1.46767 * 124.35016 * 239.73073 * 22 3 2 24 24 C 1.54666 * 105.38139 * 162.84990 * 23 22 3 25 25 C 1.54622 * 101.68292 * 25.76448 * 24 23 22 26 26 C 1.34421 * 124.35128 * 60.02247 * 22 3 2 27 27 O 1.21280 * 124.93795 * 0.39069 * 26 22 3 28 28 H 1.08998 * 109.47521 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46924 * 300.00182 * 1 2 3 30 30 H 1.08998 * 109.47166 * 59.99923 * 1 2 3 31 31 H 1.08997 * 109.47433 * 240.00352 * 2 1 3 32 32 H 1.08998 * 109.47166 * 120.00077 * 2 1 3 33 33 H 0.97006 * 120.00017 * 3.45363 * 7 5 3 34 34 H 1.07996 * 120.25463 * 359.94816 * 9 8 7 35 35 H 1.08000 * 120.66401 * 179.97438 * 10 9 8 36 36 H 1.08005 * 120.43433 * 180.02562 * 11 10 9 37 37 H 0.96997 * 120.00803 * 354.93018 * 16 15 13 38 38 H 1.09002 * 110.24246 * 281.97668 * 23 22 3 39 39 H 1.09001 * 110.24802 * 43.97648 * 23 22 3 40 40 H 1.08999 * 111.18787 * 267.58725 * 24 23 22 41 41 H 1.09000 * 110.81687 * 143.77826 * 24 23 22 42 42 H 1.08998 * 110.48401 * 216.30717 * 25 24 23 43 43 H 1.08999 * 110.48674 * 93.67098 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 8 4.2216 1.9435 0.7477 7 7 4.1297 0.8911 -1.2031 8 6 5.5186 0.8285 -1.2842 9 6 6.2941 1.6931 -0.5083 10 6 7.6768 1.6290 -0.5899 11 6 8.2490 0.7030 -1.4436 12 6 7.4142 -0.1394 -2.1983 13 6 7.9841 -1.0901 -3.0753 14 1 9.0487 -1.2717 -3.0571 15 6 7.1685 -1.7967 -3.9677 16 7 7.6244 -2.8688 -4.5611 17 14 5.4294 -1.2074 -4.3104 18 1 4.4939 -1.8377 -3.3448 19 1 5.3696 0.2693 -4.1657 20 1 5.0422 -1.5852 -5.6933 21 7 6.0848 -0.0434 -2.0960 22 7 1.6525 2.0975 1.2518 23 6 0.8123 3.2982 1.3326 24 6 0.3192 3.3560 2.7974 25 6 1.4370 2.5828 3.5348 26 6 2.0254 1.6793 2.4737 27 8 2.7305 0.7174 2.6934 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.5854 0.5366 -1.9236 34 1 5.8204 2.4064 0.1499 35 1 8.2946 2.2888 0.0012 36 1 9.3231 0.6283 -1.5292 37 1 8.5497 -3.1335 -4.4408 38 1 1.3986 4.1855 1.0938 39 1 -0.0358 3.2115 0.6535 40 1 -0.6418 2.8541 2.9097 41 1 0.2623 4.3870 3.1466 42 1 1.0185 1.9921 4.3496 43 1 2.1930 3.2719 3.9112 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882474680.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:56 Heat of formation + Delta-G solvation = -59.113958 kcal Electronic energy + Delta-G solvation = -27108.352638 eV Core-core repulsion = 23345.329201 eV Total energy + Delta-G solvation = -3763.023437 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.18877 -41.06702 -39.71842 -37.44182 -36.31077 -35.98934 -35.28247 -32.99875 -31.95003 -31.48923 -28.51945 -28.29161 -27.18531 -24.24310 -23.62489 -23.24112 -22.69226 -21.79012 -20.57112 -20.00483 -18.98624 -18.34975 -17.56945 -17.20150 -16.93623 -16.70347 -16.42932 -15.88507 -15.71767 -15.47901 -15.25366 -14.77544 -14.68771 -14.52287 -14.32307 -14.23886 -13.79408 -13.78095 -13.69359 -13.33422 -13.23299 -12.84499 -12.68347 -12.41165 -12.14678 -12.11081 -12.02922 -11.77722 -11.76384 -11.69664 -11.07896 -10.80036 -10.65511 -10.42458 -9.83469 -9.70248 -9.44568 -9.19058 -6.83207 0.48030 0.72425 1.37328 1.50477 1.53791 1.69303 1.83036 1.97069 2.17355 2.41726 2.60576 3.32230 3.52003 3.53435 3.69579 3.77856 3.92036 4.05577 4.11136 4.22049 4.34208 4.37409 4.44521 4.62378 4.65127 4.71714 4.72782 4.75792 4.77170 4.89620 5.04794 5.13296 5.14291 5.28092 5.31659 5.34360 5.35191 5.39541 5.53856 5.69067 5.79342 5.91301 6.17749 6.25876 6.38532 6.62748 6.99189 7.25894 7.48326 7.90664 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019567 B = 0.004009 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.644587 B = 6982.147746 C = 7888.472695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.138 4.138 3 C 0.153 3.847 4 H 0.165 0.835 5 C 0.499 3.501 6 O -0.530 6.530 7 N -0.648 5.648 8 C 0.374 3.626 9 C -0.313 4.313 10 C -0.032 4.032 11 C -0.294 4.294 12 C 0.258 3.742 13 C -0.513 4.513 14 H 0.068 0.932 15 C 0.018 3.982 16 N -0.825 5.825 17 Si 1.174 2.826 18 H -0.279 1.279 19 H -0.280 1.280 20 H -0.316 1.316 21 N -0.605 5.605 22 N -0.604 5.604 23 C 0.095 3.905 24 C -0.113 4.113 25 C -0.152 4.152 26 C 0.505 3.495 27 O -0.579 6.579 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.045 0.955 33 H 0.418 0.582 34 H 0.148 0.852 35 H 0.140 0.860 36 H 0.114 0.886 37 H 0.281 0.719 38 H 0.076 0.924 39 H 0.114 0.886 40 H 0.100 0.900 41 H 0.115 0.885 42 H 0.106 0.894 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.416 14.171 9.048 28.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.177 4.177 3 C 0.046 3.954 4 H 0.182 0.818 5 C 0.286 3.714 6 O -0.404 6.404 7 N -0.295 5.295 8 C 0.142 3.858 9 C -0.337 4.337 10 C -0.057 4.057 11 C -0.316 4.316 12 C 0.133 3.867 13 C -0.545 4.545 14 H 0.086 0.914 15 C -0.199 4.199 16 N -0.447 5.447 17 Si 1.003 2.997 18 H -0.206 1.206 19 H -0.207 1.207 20 H -0.248 1.248 21 N -0.331 5.331 22 N -0.338 5.338 23 C -0.026 4.026 24 C -0.151 4.151 25 C -0.192 4.192 26 C 0.294 3.706 27 O -0.458 6.458 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.064 0.936 33 H 0.256 0.744 34 H 0.165 0.835 35 H 0.158 0.842 36 H 0.132 0.868 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.132 0.868 40 H 0.119 0.881 41 H 0.134 0.866 42 H 0.125 0.875 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -23.358 13.022 8.465 28.051 hybrid contribution 3.220 -0.039 0.964 3.362 sum -20.138 12.983 9.430 25.749 Atomic orbital electron populations 1.21649 0.91337 1.02807 1.03311 1.21919 0.99711 0.93166 1.02924 1.20972 0.87285 0.97236 0.89904 0.81825 1.21955 0.92762 0.76740 0.79920 1.90564 1.65191 1.44433 1.40260 1.43280 1.04174 1.59477 1.22596 1.18469 0.84319 0.90656 0.92377 1.22026 0.94172 1.07419 1.10121 1.21324 0.94517 0.95454 0.94360 1.21785 0.99641 1.03679 1.06517 1.18382 0.86332 0.90682 0.91316 1.20667 0.96405 1.19763 1.17672 0.91417 1.28581 1.10513 0.90484 0.90313 1.70637 1.18272 1.18071 1.37753 0.81792 0.69036 0.76208 0.72643 1.20586 1.20692 1.24825 1.66205 1.13097 1.26039 1.27710 1.48153 1.51573 1.29985 1.04059 1.22548 0.94598 0.85551 0.99863 1.22653 0.97536 1.02938 0.91931 1.22361 1.00577 0.99008 0.97251 1.21726 0.78607 0.84302 0.85927 1.90710 1.39238 1.31176 1.84711 0.92122 0.92219 0.89609 0.89899 0.93594 0.74438 0.83485 0.84232 0.86756 0.90808 0.90616 0.86820 0.88100 0.86614 0.87544 0.87837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 9.80 71.98 0.71 -1.13 16 2 C -0.14 -3.07 5.30 30.59 0.16 -2.90 16 3 C 0.15 3.37 2.67 44.25 0.12 3.49 16 4 H 0.16 2.02 8.07 -2.39 -0.02 2.00 16 5 C 0.50 17.03 6.75 87.66 0.59 17.62 16 6 O -0.53 -22.18 11.53 11.53 0.13 -22.04 16 7 N -0.65 -24.10 5.24 -308.37 -1.62 -25.72 16 8 C 0.37 17.64 7.51 133.25 1.00 18.64 16 9 C -0.31 -14.65 8.89 22.72 0.20 -14.45 16 10 C -0.03 -1.46 10.15 22.39 0.23 -1.23 16 11 C -0.29 -14.66 9.83 22.86 0.22 -14.44 16 12 C 0.26 14.19 6.28 40.20 0.25 14.44 16 13 C -0.51 -29.45 9.52 23.47 0.22 -29.23 16 14 H 0.07 3.95 8.06 -2.91 -0.02 3.93 16 15 C 0.02 1.02 5.51 85.29 0.47 1.49 16 16 N -0.82 -46.39 13.65 21.84 0.30 -46.09 16 17 Si 1.17 55.49 25.95 68.60 1.78 57.27 16 18 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 19 H -0.28 -13.02 6.49 99.48 0.65 -12.37 16 20 H -0.32 -14.25 7.11 99.48 0.71 -13.55 16 21 N -0.61 -31.54 5.00 -186.36 -0.93 -32.48 16 22 N -0.60 -12.25 2.08 -797.83 -1.66 -13.90 16 23 C 0.10 0.87 7.31 86.90 0.64 1.51 16 24 C -0.11 -0.70 7.19 31.71 0.23 -0.48 16 25 C -0.15 -2.37 6.86 30.58 0.21 -2.16 16 26 C 0.50 13.73 6.69 87.90 0.59 14.31 16 27 O -0.58 -23.07 15.33 11.52 0.18 -22.89 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.06 0.78 7.75 -2.38 -0.02 0.76 16 30 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.08 1.79 7.50 -2.39 -0.02 1.77 16 32 H 0.05 1.41 6.65 -2.39 -0.02 1.40 16 33 H 0.42 12.99 8.29 -92.70 -0.77 12.22 16 34 H 0.15 6.78 5.18 -9.04 -0.05 6.74 16 35 H 0.14 5.23 8.06 -2.91 -0.02 5.21 16 36 H 0.11 5.34 8.06 -2.91 -0.02 5.31 16 37 H 0.28 15.40 8.73 -92.71 -0.81 14.59 16 38 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.11 0.33 8.14 -2.39 -0.02 0.32 16 40 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 41 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 42 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -82.46 351.22 4.16 -78.30 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: 0.14 Total: 22.07 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: 5.84 Total: 5.48 kcal Atomic # 7 Polarization: -114.29 SS G_CDS: -3.91 Total: -118.19 kcal Atomic # 8 Polarization: -45.25 SS G_CDS: 0.31 Total: -44.94 kcal Atomic # 14 Polarization: 55.49 SS G_CDS: 1.78 Total: 57.27 kcal Total: -82.46 4.16 -78.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882474680.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.190 kcal (2) G-P(sol) polarization free energy of solvation -82.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds