Wall clock time and date at job start Tue Mar 31 2020 12:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.58572 * 2 1 4 4 C 1.53194 * 109.70850 * 239.64053 * 2 1 3 5 5 C 1.53036 * 109.31485 * 185.50337 * 4 2 1 6 6 C 1.53047 * 109.53400 * 61.37078 * 5 4 2 7 7 C 1.53618 * 109.23932 * 298.50814 * 6 5 4 8 8 N 1.46924 * 108.54588 * 54.85790 * 7 6 5 9 9 C 1.34780 * 120.63094 * 126.36944 * 8 7 6 10 10 O 1.21356 * 120.00034 * 186.97141 * 9 8 7 11 11 C 1.49373 * 119.99764 * 6.96508 * 9 8 7 12 12 O 1.21352 * 120.00000 * 6.68828 * 11 9 8 13 13 N 1.34775 * 119.99421 * 186.68929 * 11 9 8 14 14 C 1.39114 * 119.99406 * 174.95420 * 13 11 9 15 15 C 1.39711 * 119.57734 * 185.06933 * 14 13 11 16 16 C 1.38656 * 119.49379 * 180.02562 * 15 14 13 17 17 C 1.38338 * 118.67242 * 0.02562 * 16 15 14 18 18 C 1.40597 * 119.13526 * 359.97438 * 17 16 15 19 19 C 1.41335 * 119.78468 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00273 * 354.95842 * 19 18 17 21 21 C 1.40032 * 119.99907 * 175.22207 * 19 18 17 22 22 N 1.30738 * 120.00160 * 4.77891 * 21 19 18 23 23 Si 1.86800 * 119.99996 * 184.77569 * 21 19 18 24 24 H 1.48503 * 109.47207 * 95.00057 * 23 21 19 25 25 H 1.48500 * 109.47240 * 215.00162 * 23 21 19 26 26 H 1.48500 * 109.47244 * 335.00227 * 23 21 19 27 27 N 1.31936 * 119.58115 * 5.32845 * 14 13 11 28 28 H 1.09004 * 109.47542 * 304.47869 * 1 2 3 29 29 H 1.08999 * 109.47174 * 64.48821 * 1 2 3 30 30 H 1.09003 * 109.46864 * 184.47882 * 1 2 3 31 31 H 1.08991 * 109.49763 * 305.46266 * 4 2 1 32 32 H 1.09008 * 109.49106 * 65.55715 * 4 2 1 33 33 H 1.09006 * 109.45756 * 181.38643 * 5 4 2 34 34 H 1.08999 * 109.46217 * 301.35099 * 5 4 2 35 35 H 1.08996 * 109.49951 * 58.58501 * 6 5 4 36 36 H 1.09005 * 109.49119 * 178.68277 * 6 5 4 37 37 H 1.09008 * 109.74148 * 295.11788 * 7 6 5 38 38 H 1.08998 * 109.66368 * 174.55402 * 7 6 5 39 39 H 0.96997 * 120.00668 * 354.94632 * 13 11 9 40 40 H 1.08000 * 120.25038 * 0.02562 * 15 14 13 41 41 H 1.07995 * 120.66082 * 179.97438 * 16 15 14 42 42 H 1.08001 * 120.43128 * 180.02562 * 17 16 15 43 43 H 0.97000 * 120.00330 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0466 -0.7289 -1.2444 5 6 3.5706 -0.8443 -1.1673 6 6 3.9602 -1.6607 0.0672 7 6 3.4659 -0.9374 1.3291 8 7 2.0225 -0.6980 1.1954 9 6 1.1671 -1.1059 2.1537 10 8 -0.0302 -1.0171 1.9762 11 6 1.6927 -1.6673 3.4342 12 8 2.8843 -1.6449 3.6628 13 7 0.8434 -2.1989 4.3357 14 6 1.3399 -2.8157 5.4795 15 6 0.4596 -3.4566 6.3548 16 6 0.9563 -4.0704 7.4946 17 6 2.3186 -4.0279 7.7312 18 6 3.1527 -3.3671 6.8123 19 6 4.5465 -3.3149 7.0409 20 1 4.9586 -3.7096 7.9578 21 6 5.3926 -2.7463 6.0808 22 7 4.8865 -2.1803 5.0165 23 14 7.2444 -2.7965 6.3208 24 1 7.8048 -3.9704 5.6043 25 1 7.8476 -1.5521 5.7797 26 1 7.5531 -2.9071 7.7691 27 7 2.6355 -2.7835 5.7266 28 1 -0.3634 0.5818 0.8471 29 1 -0.3633 0.4426 -0.9275 30 1 -0.3633 -1.0246 0.0803 31 1 1.6081 -1.7257 -1.2904 32 1 1.7689 -0.1672 -2.1364 33 1 3.9430 -1.3408 -2.0634 34 1 4.0071 0.1520 -1.0963 35 1 3.5037 -2.6488 0.0088 36 1 5.0447 -1.7623 0.1087 37 1 3.9860 0.0147 1.4353 38 1 3.6537 -1.5583 2.2050 39 1 -0.1139 -2.1513 4.1871 40 1 -0.5998 -3.4739 6.1451 41 1 0.2927 -4.5709 8.1842 42 1 2.7361 -4.4969 8.6100 43 1 5.4725 -1.7861 4.3516 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889826038.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:19 Heat of formation + Delta-G solvation = 14.101030 kcal Electronic energy + Delta-G solvation = -27496.655642 eV Core-core repulsion = 23736.807045 eV Total energy + Delta-G solvation = -3759.848597 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.76413 -39.01310 -37.52968 -37.20036 -34.44228 -33.21570 -32.61946 -32.47249 -30.40295 -29.25614 -27.58463 -25.79701 -24.98500 -23.90605 -22.38371 -21.53045 -21.07884 -20.20426 -19.07556 -17.82622 -16.77258 -16.49546 -15.93703 -15.60920 -15.15808 -14.75930 -14.66183 -14.50557 -14.13275 -14.01109 -13.69160 -13.54610 -13.44467 -12.93429 -12.77058 -12.45157 -12.23489 -12.10883 -12.00784 -11.64353 -11.23676 -11.07987 -11.03120 -11.01020 -10.93563 -10.70321 -10.64260 -10.54625 -10.03373 -9.89512 -9.70177 -9.10803 -8.51663 -8.42971 -8.05436 -7.29866 -7.08084 -6.25631 -4.47130 1.90838 2.72962 2.80207 3.06609 3.12549 3.15237 3.21680 3.90500 3.93238 4.00072 4.68569 4.73574 4.83967 4.85848 4.94255 5.09793 5.26505 5.34200 5.50520 5.65228 5.72953 5.78019 5.91712 5.93446 5.93978 6.02111 6.05104 6.15766 6.26832 6.35309 6.39602 6.45171 6.57456 6.70360 6.77632 6.80516 7.17951 7.36387 7.45797 7.51632 7.74300 7.85477 8.04866 8.18311 8.36384 8.61650 8.91522 8.99510 10.11549 10.38391 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013332 B = 0.005008 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.660269 B = 5590.247748 C = 7471.839836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.139 3.861 3 H 0.071 0.929 4 C -0.129 4.129 5 C -0.122 4.122 6 C -0.134 4.134 7 C 0.061 3.939 8 N -0.580 5.580 9 C 0.509 3.491 10 O -0.530 6.530 11 C 0.467 3.533 12 O -0.381 6.381 13 N -0.636 5.636 14 C 0.367 3.633 15 C -0.348 4.348 16 C -0.036 4.036 17 C -0.300 4.300 18 C 0.272 3.728 19 C -0.424 4.424 20 H 0.083 0.917 21 C 0.061 3.939 22 N -0.664 5.664 23 Si 0.897 3.103 24 H -0.272 1.272 25 H -0.277 1.277 26 H -0.263 1.263 27 N -0.473 5.473 28 H 0.069 0.931 29 H 0.041 0.959 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.157 0.843 39 H 0.412 0.588 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.502 3.707 -11.453 12.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.036 3.964 3 H 0.089 0.911 4 C -0.168 4.168 5 C -0.159 4.159 6 C -0.172 4.172 7 C -0.060 4.060 8 N -0.314 5.314 9 C 0.292 3.708 10 O -0.408 6.408 11 C 0.245 3.755 12 O -0.245 6.245 13 N -0.284 5.284 14 C 0.129 3.871 15 C -0.374 4.374 16 C -0.060 4.060 17 C -0.323 4.323 18 C 0.147 3.853 19 C -0.455 4.455 20 H 0.101 0.899 21 C -0.167 4.167 22 N -0.283 5.283 23 Si 0.722 3.278 24 H -0.197 1.197 25 H -0.203 1.203 26 H -0.187 1.187 27 N -0.193 5.193 28 H 0.088 0.912 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.174 0.826 39 H 0.247 0.753 40 H 0.113 0.887 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.575 4.349 -12.215 13.061 hybrid contribution -0.241 -0.334 0.413 0.583 sum -1.816 4.015 -11.801 12.597 Atomic orbital electron populations 1.22239 0.92594 1.04179 1.00478 1.21379 0.95823 0.95068 0.84124 0.91111 1.21991 0.96235 1.01358 0.97171 1.21562 0.95479 1.00545 0.98332 1.22002 1.01307 0.99335 0.94549 1.23204 0.77930 1.02699 1.02149 1.47993 1.08428 1.55958 1.18979 1.20659 0.86264 0.78727 0.85137 1.90741 1.15447 1.54939 1.79691 1.20326 0.88064 0.82017 0.85089 1.90870 1.12515 1.48031 1.73127 1.43028 1.10156 1.55529 1.19688 1.18562 0.91841 0.91390 0.85325 1.20519 0.97666 1.17394 1.01780 1.20583 0.94861 0.95732 0.94842 1.21659 0.93797 1.12770 1.04083 1.18358 0.93413 0.87355 0.86190 1.19594 0.90068 1.32503 1.03301 0.89853 1.26136 1.00381 0.94870 0.95333 1.70306 1.35371 1.18090 1.04517 0.86478 0.83258 0.78351 0.79735 1.19689 1.20255 1.18720 1.68637 1.07205 1.22594 1.20831 0.91208 0.94035 0.90586 0.91464 0.91018 0.91993 0.91930 0.91759 0.90695 0.91729 0.82632 0.75266 0.88744 0.88382 0.88383 0.91738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 7.60 37.16 0.28 -1.47 16 2 C 0.14 1.72 3.48 -67.60 -0.24 1.48 16 3 H 0.07 0.82 8.14 -51.92 -0.42 0.39 16 4 C -0.13 -1.35 5.38 -26.61 -0.14 -1.49 16 5 C -0.12 -1.23 5.88 -26.69 -0.16 -1.38 16 6 C -0.13 -1.63 6.10 -26.39 -0.16 -1.79 16 7 C 0.06 0.90 6.05 -3.49 -0.02 0.88 16 8 N -0.58 -8.73 2.97 -165.49 -0.49 -9.22 16 9 C 0.51 8.88 7.66 -11.62 -0.09 8.79 16 10 O -0.53 -9.36 11.90 5.49 0.07 -9.29 16 11 C 0.47 9.51 7.71 -11.62 -0.09 9.42 16 12 O -0.38 -8.66 8.90 5.49 0.05 -8.61 16 13 N -0.64 -13.03 5.37 -11.83 -0.06 -13.09 16 14 C 0.37 8.80 7.42 -155.09 -1.15 7.65 16 15 C -0.35 -7.73 9.96 -38.88 -0.39 -8.11 16 16 C -0.04 -0.80 10.15 -39.39 -0.40 -1.20 16 17 C -0.30 -7.32 9.83 -38.66 -0.38 -7.70 16 18 C 0.27 7.35 6.55 -85.00 -0.56 6.80 16 19 C -0.42 -11.17 9.13 -37.73 -0.34 -11.51 16 20 H 0.08 2.07 7.85 -52.49 -0.41 1.65 16 21 C 0.06 1.53 5.49 -17.34 -0.10 1.43 16 22 N -0.66 -16.96 9.01 55.55 0.50 -16.46 16 23 Si 0.90 18.30 29.56 -169.99 -5.03 13.27 16 24 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 25 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 26 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 27 N -0.47 -12.73 5.75 -10.28 -0.06 -12.79 16 28 H 0.07 1.00 6.88 -51.93 -0.36 0.64 16 29 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 1.10 6.62 -51.93 -0.34 0.75 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.91 8.14 -51.92 -0.42 0.48 16 38 H 0.16 2.84 4.21 -55.35 -0.23 2.61 16 39 H 0.41 7.25 8.18 -40.82 -0.33 6.92 16 40 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 41 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 42 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 43 H 0.27 6.36 8.29 -40.82 -0.34 6.02 16 LS Contribution 342.65 15.07 5.16 5.16 Total: -1.00 -28.98 342.65 -9.68 -38.66 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -5.89 Total: 10.57 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: -3.93 Total: 1.80 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: -0.11 Total: -51.56 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: 0.11 Total: -17.90 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.27 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.98 -9.68 -38.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889826038.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.760 kcal (2) G-P(sol) polarization free energy of solvation -28.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds