Wall clock time and date at job start Tue Mar 31 2020 12:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.58572 * 2 1 4 4 C 1.53194 * 109.70850 * 239.64053 * 2 1 3 5 5 C 1.53036 * 109.31485 * 185.50337 * 4 2 1 6 6 C 1.53047 * 109.53400 * 61.37078 * 5 4 2 7 7 C 1.53618 * 109.23932 * 298.50814 * 6 5 4 8 8 N 1.46924 * 108.54588 * 54.85790 * 7 6 5 9 9 C 1.34780 * 120.63094 * 126.36944 * 8 7 6 10 10 O 1.21356 * 120.00034 * 186.97141 * 9 8 7 11 11 C 1.49373 * 119.99764 * 6.96508 * 9 8 7 12 12 O 1.21352 * 120.00000 * 6.68828 * 11 9 8 13 13 N 1.34775 * 119.99421 * 186.68929 * 11 9 8 14 14 C 1.39114 * 119.99406 * 174.95420 * 13 11 9 15 15 C 1.39711 * 119.57734 * 185.06933 * 14 13 11 16 16 C 1.38656 * 119.49379 * 180.02562 * 15 14 13 17 17 C 1.38338 * 118.67242 * 0.02562 * 16 15 14 18 18 C 1.40597 * 119.13526 * 359.97438 * 17 16 15 19 19 C 1.41335 * 119.78468 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00273 * 354.95842 * 19 18 17 21 21 C 1.40032 * 119.99907 * 175.22207 * 19 18 17 22 22 N 1.30738 * 120.00160 * 4.77891 * 21 19 18 23 23 Si 1.86800 * 119.99996 * 184.77569 * 21 19 18 24 24 H 1.48503 * 109.47207 * 95.00057 * 23 21 19 25 25 H 1.48500 * 109.47240 * 215.00162 * 23 21 19 26 26 H 1.48500 * 109.47244 * 335.00227 * 23 21 19 27 27 N 1.31936 * 119.58115 * 5.32845 * 14 13 11 28 28 H 1.09004 * 109.47542 * 304.47869 * 1 2 3 29 29 H 1.08999 * 109.47174 * 64.48821 * 1 2 3 30 30 H 1.09003 * 109.46864 * 184.47882 * 1 2 3 31 31 H 1.08991 * 109.49763 * 305.46266 * 4 2 1 32 32 H 1.09008 * 109.49106 * 65.55715 * 4 2 1 33 33 H 1.09006 * 109.45756 * 181.38643 * 5 4 2 34 34 H 1.08999 * 109.46217 * 301.35099 * 5 4 2 35 35 H 1.08996 * 109.49951 * 58.58501 * 6 5 4 36 36 H 1.09005 * 109.49119 * 178.68277 * 6 5 4 37 37 H 1.09008 * 109.74148 * 295.11788 * 7 6 5 38 38 H 1.08998 * 109.66368 * 174.55402 * 7 6 5 39 39 H 0.96997 * 120.00668 * 354.94632 * 13 11 9 40 40 H 1.08000 * 120.25038 * 0.02562 * 15 14 13 41 41 H 1.07995 * 120.66082 * 179.97438 * 16 15 14 42 42 H 1.08001 * 120.43128 * 180.02562 * 17 16 15 43 43 H 0.97000 * 120.00330 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0466 -0.7289 -1.2444 5 6 3.5706 -0.8443 -1.1673 6 6 3.9602 -1.6607 0.0672 7 6 3.4659 -0.9374 1.3291 8 7 2.0225 -0.6980 1.1954 9 6 1.1671 -1.1059 2.1537 10 8 -0.0302 -1.0171 1.9762 11 6 1.6927 -1.6673 3.4342 12 8 2.8843 -1.6449 3.6628 13 7 0.8434 -2.1989 4.3357 14 6 1.3399 -2.8157 5.4795 15 6 0.4596 -3.4566 6.3548 16 6 0.9563 -4.0704 7.4946 17 6 2.3186 -4.0279 7.7312 18 6 3.1527 -3.3671 6.8123 19 6 4.5465 -3.3149 7.0409 20 1 4.9586 -3.7096 7.9578 21 6 5.3926 -2.7463 6.0808 22 7 4.8865 -2.1803 5.0165 23 14 7.2444 -2.7965 6.3208 24 1 7.8048 -3.9704 5.6043 25 1 7.8476 -1.5521 5.7797 26 1 7.5531 -2.9071 7.7691 27 7 2.6355 -2.7835 5.7266 28 1 -0.3634 0.5818 0.8471 29 1 -0.3633 0.4426 -0.9275 30 1 -0.3633 -1.0246 0.0803 31 1 1.6081 -1.7257 -1.2904 32 1 1.7689 -0.1672 -2.1364 33 1 3.9430 -1.3408 -2.0634 34 1 4.0071 0.1520 -1.0963 35 1 3.5037 -2.6488 0.0088 36 1 5.0447 -1.7623 0.1087 37 1 3.9860 0.0147 1.4353 38 1 3.6537 -1.5583 2.2050 39 1 -0.1139 -2.1513 4.1871 40 1 -0.5998 -3.4739 6.1451 41 1 0.2927 -4.5709 8.1842 42 1 2.7361 -4.4969 8.6100 43 1 5.4725 -1.7861 4.3516 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889826038.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:18 Heat of formation + Delta-G solvation = -2.071556 kcal Electronic energy + Delta-G solvation = -27497.356937 eV Core-core repulsion = 23736.807045 eV Total energy + Delta-G solvation = -3760.549893 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.13532 -40.60627 -39.15572 -38.48586 -36.13702 -34.95997 -33.73136 -33.59685 -32.25654 -31.07099 -28.67303 -27.59481 -26.32873 -25.15871 -23.81675 -23.15641 -22.45583 -21.48685 -20.53882 -19.51104 -18.27744 -18.13169 -17.30790 -16.98257 -16.44872 -16.43376 -16.28013 -15.81636 -15.63024 -15.29117 -15.12491 -14.92613 -14.67489 -14.47922 -14.09402 -13.81781 -13.73446 -13.56515 -13.23329 -12.91640 -12.75458 -12.72496 -12.54738 -12.34186 -12.12467 -12.03518 -11.85457 -11.74354 -11.63195 -11.54826 -11.07674 -10.87199 -9.97035 -9.92151 -9.66893 -9.06619 -8.90203 -8.08191 -6.40992 0.38251 1.04040 1.27986 1.37597 1.44361 1.55425 1.56516 2.28977 2.36280 2.50977 2.99037 3.36967 3.80849 3.84202 3.97293 4.01931 4.09135 4.28663 4.33403 4.35271 4.48807 4.66220 4.73075 4.80149 4.82014 4.91790 4.94135 4.95093 4.99851 5.04149 5.10555 5.16108 5.21309 5.28049 5.37504 5.43402 5.61983 5.64898 5.79731 5.90795 6.04651 6.15640 6.28830 6.51111 6.74782 6.87399 7.05362 7.31807 8.25491 8.56704 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013332 B = 0.005008 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.660269 B = 5590.247748 C = 7471.839836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.132 3.868 3 H 0.087 0.913 4 C -0.124 4.124 5 C -0.116 4.116 6 C -0.129 4.129 7 C 0.062 3.938 8 N -0.573 5.573 9 C 0.512 3.488 10 O -0.535 6.535 11 C 0.456 3.544 12 O -0.406 6.406 13 N -0.632 5.632 14 C 0.347 3.653 15 C -0.344 4.344 16 C -0.033 4.033 17 C -0.323 4.323 18 C 0.238 3.762 19 C -0.461 4.461 20 H 0.086 0.914 21 C 0.017 3.983 22 N -0.691 5.691 23 Si 0.974 3.026 24 H -0.268 1.268 25 H -0.270 1.270 26 H -0.260 1.260 27 N -0.503 5.503 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.050 0.950 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.122 0.878 39 H 0.423 0.577 40 H 0.127 0.873 41 H 0.138 0.862 42 H 0.107 0.893 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.567 4.304 -13.228 14.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.031 3.969 3 H 0.105 0.895 4 C -0.162 4.162 5 C -0.153 4.153 6 C -0.167 4.167 7 C -0.060 4.060 8 N -0.306 5.306 9 C 0.294 3.706 10 O -0.414 6.414 11 C 0.235 3.765 12 O -0.272 6.272 13 N -0.281 5.281 14 C 0.109 3.891 15 C -0.369 4.369 16 C -0.057 4.057 17 C -0.346 4.346 18 C 0.113 3.887 19 C -0.492 4.492 20 H 0.104 0.896 21 C -0.209 4.209 22 N -0.310 5.310 23 Si 0.795 3.205 24 H -0.193 1.193 25 H -0.195 1.195 26 H -0.184 1.184 27 N -0.222 5.222 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.120 0.880 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.139 0.861 39 H 0.261 0.739 40 H 0.145 0.855 41 H 0.156 0.844 42 H 0.125 0.875 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.672 4.955 -14.019 14.963 hybrid contribution -0.350 -0.513 0.940 1.127 sum -2.022 4.442 -13.079 13.960 Atomic orbital electron populations 1.22108 0.92747 1.02775 1.01193 1.21700 0.95763 0.95862 0.83602 0.89465 1.21980 0.96272 1.00930 0.96978 1.21547 0.95287 1.00880 0.97624 1.21959 1.01684 0.98676 0.94390 1.23038 0.77934 1.02667 1.02314 1.48093 1.08292 1.55062 1.19128 1.20119 0.86413 0.79368 0.84671 1.90752 1.15409 1.55598 1.79677 1.20998 0.87885 0.81562 0.86051 1.90910 1.13577 1.48740 1.73937 1.43035 1.10872 1.55281 1.18956 1.19010 0.91683 0.91825 0.86596 1.20947 0.99112 1.15783 1.01068 1.21024 0.94526 0.94911 0.95250 1.21851 0.94918 1.13454 1.04329 1.18837 0.94458 0.88264 0.87142 1.19903 0.90721 1.34278 1.04275 0.89633 1.26925 1.04930 0.94220 0.94785 1.70441 1.37057 1.18425 1.05073 0.85325 0.77077 0.78468 0.79622 1.19257 1.19493 1.18389 1.68602 1.08784 1.23526 1.21329 0.93155 0.90994 0.92584 0.92526 0.88043 0.90074 0.90737 0.93128 0.89758 0.90957 0.86061 0.73884 0.85463 0.84447 0.87453 0.91448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 7.60 71.98 0.55 -2.55 16 2 C 0.13 2.99 3.48 44.97 0.16 3.15 16 3 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 4 C -0.12 -2.19 5.38 30.67 0.16 -2.02 16 5 C -0.12 -1.98 5.88 30.62 0.18 -1.80 16 6 C -0.13 -2.99 6.10 30.82 0.19 -2.81 16 7 C 0.06 1.82 6.05 86.51 0.52 2.34 16 8 N -0.57 -17.01 2.97 -795.85 -2.36 -19.37 16 9 C 0.51 18.11 7.66 87.24 0.67 18.78 16 10 O -0.54 -18.93 11.90 -3.27 -0.04 -18.97 16 11 C 0.46 19.21 7.71 87.25 0.67 19.89 16 12 O -0.41 -19.35 8.90 -3.25 -0.03 -19.38 16 13 N -0.63 -26.45 5.37 -309.70 -1.66 -28.11 16 14 C 0.35 16.95 7.42 133.30 0.99 17.94 16 15 C -0.34 -14.97 9.96 22.73 0.23 -14.74 16 16 C -0.03 -1.43 10.15 22.39 0.23 -1.20 16 17 C -0.32 -15.97 9.83 22.87 0.22 -15.74 16 18 C 0.24 13.36 6.55 40.20 0.26 13.62 16 19 C -0.46 -25.23 9.13 23.47 0.21 -25.02 16 20 H 0.09 4.41 7.85 -2.91 -0.02 4.39 16 21 C 0.02 0.88 5.49 85.29 0.47 1.35 16 22 N -0.69 -36.69 9.01 21.84 0.20 -36.49 16 23 Si 0.97 38.45 29.56 68.60 2.03 40.48 16 24 H -0.27 -10.28 7.11 99.48 0.71 -9.58 16 25 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 26 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 27 N -0.50 -28.02 5.75 -186.42 -1.07 -29.09 16 28 H 0.05 1.38 6.88 -2.39 -0.02 1.37 16 29 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.06 1.56 6.62 -2.39 -0.02 1.54 16 31 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.10 1.26 8.14 -2.38 -0.02 1.25 16 33 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 37 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 38 H 0.12 4.64 4.21 -56.52 -0.24 4.40 16 39 H 0.42 14.99 8.18 -92.71 -0.76 14.23 16 40 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 41 H 0.14 4.77 8.06 -2.91 -0.02 4.75 16 42 H 0.11 4.93 8.06 -2.91 -0.02 4.90 16 43 H 0.27 13.38 8.29 -92.71 -0.77 12.62 16 Total: -1.00 -65.56 342.65 2.83 -62.73 By element: Atomic # 1 Polarization: 36.97 SS G_CDS: 0.06 Total: 37.03 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: 5.72 Total: 11.18 kcal Atomic # 7 Polarization: -108.16 SS G_CDS: -4.90 Total: -113.06 kcal Atomic # 8 Polarization: -38.29 SS G_CDS: -0.07 Total: -38.35 kcal Atomic # 14 Polarization: 38.45 SS G_CDS: 2.03 Total: 40.48 kcal Total: -65.56 2.83 -62.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889826038.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.660 kcal (2) G-P(sol) polarization free energy of solvation -65.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds