Wall clock time and date at job start Tue Mar 31 2020 11:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47129 * 2 1 4 4 N 1.46506 * 109.46726 * 179.97438 * 3 2 1 5 5 C 1.34781 * 119.99779 * 90.00171 * 4 3 2 6 6 O 1.21360 * 119.99757 * 3.60527 * 5 4 3 7 7 C 1.49361 * 119.99814 * 183.61033 * 5 4 3 8 8 O 1.21359 * 120.00370 * 5.53385 * 7 5 4 9 9 N 1.34777 * 119.99717 * 185.53233 * 7 5 4 10 10 C 1.39118 * 119.99795 * 185.55517 * 9 7 5 11 11 C 1.39708 * 119.58100 * 14.14149 * 10 9 7 12 12 C 1.38644 * 119.49375 * 180.02562 * 11 10 9 13 13 C 1.38340 * 118.67779 * 359.97438 * 12 11 10 14 14 C 1.40599 * 119.13144 * 359.97438 * 13 12 11 15 15 C 1.41338 * 119.78745 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99872 * 5.59311 * 15 14 13 17 17 C 1.40030 * 120.00286 * 185.59348 * 15 14 13 18 18 N 1.30740 * 119.99631 * 5.60085 * 17 15 14 19 19 Si 1.86798 * 119.99803 * 185.60272 * 17 15 14 20 20 H 1.48504 * 109.47112 * 264.99887 * 19 17 15 21 21 H 1.48495 * 109.47602 * 25.00353 * 19 17 15 22 22 H 1.48498 * 109.46938 * 145.00632 * 19 17 15 23 23 N 1.31939 * 119.57815 * 194.40011 * 10 9 7 24 24 C 1.46500 * 120.00158 * 270.00263 * 4 3 2 25 25 C 1.53000 * 117.49752 * 1.41016 * 24 4 3 26 26 C 1.53003 * 60.00099 * 252.51701 * 25 24 4 27 27 H 1.08998 * 109.47417 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47198 * 300.00723 * 1 2 3 29 29 H 1.09003 * 109.46760 * 59.99874 * 1 2 3 30 30 H 1.09000 * 109.46588 * 239.99706 * 2 1 3 31 31 H 1.09003 * 109.46760 * 120.00126 * 2 1 3 32 32 H 1.08997 * 109.47119 * 60.00335 * 3 2 1 33 33 H 1.08995 * 109.46966 * 299.99268 * 3 2 1 34 34 H 0.96993 * 120.00533 * 5.56009 * 9 7 5 35 35 H 1.08005 * 120.24674 * 0.02562 * 11 10 9 36 36 H 1.08005 * 120.66459 * 179.97438 * 12 11 10 37 37 H 1.08001 * 120.43538 * 180.02562 * 13 12 11 38 38 H 0.97005 * 119.99563 * 179.97438 * 18 17 15 39 39 H 1.08997 * 115.55151 * 147.12528 * 24 4 3 40 40 H 1.09002 * 117.49738 * 0.02562 * 25 24 4 41 41 H 1.08995 * 117.49835 * 145.02651 * 25 24 4 42 42 H 1.09003 * 117.49434 * 252.51598 * 26 25 24 43 43 H 1.08997 * 117.52266 * 107.48570 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1794 1.4422 -1.1664 6 8 3.5748 1.5082 -2.2165 7 6 5.6708 1.3606 -1.1670 8 8 6.2699 1.1935 -0.1249 9 7 6.3513 1.4726 -2.3250 10 6 7.7292 1.2817 -2.3433 11 6 8.3583 0.6914 -1.2445 12 6 9.7317 0.5026 -1.2644 13 6 10.4413 0.9074 -2.3808 14 6 9.7503 1.4943 -3.4554 15 6 10.4616 1.9134 -4.6026 16 1 11.5169 1.7015 -4.6910 17 6 9.7981 2.6035 -5.6246 18 7 8.5486 2.9564 -5.4707 19 14 10.6982 3.0198 -7.2075 20 1 11.2466 4.3969 -7.1177 21 1 11.8096 2.0567 -7.4130 22 1 9.7537 2.9368 -8.3505 23 7 8.4258 1.6652 -3.3961 24 6 4.2371 1.4425 1.2696 25 6 3.4148 1.4093 2.5595 26 6 4.1347 2.6938 2.1440 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6768 1.9562 -0.8900 34 1 5.8804 1.6863 -3.1456 35 1 7.7792 0.3846 -0.3860 36 1 10.2375 0.0485 -0.4251 37 1 11.5120 0.7735 -2.4267 38 1 8.0891 3.4347 -6.1785 39 1 5.1873 0.9086 1.2643 40 1 2.3292 1.3869 2.4638 41 1 3.8240 0.8533 3.4030 42 1 5.0175 2.9829 2.7143 43 1 3.5231 3.5171 1.7750 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889901075.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:56 Heat of formation + Delta-G solvation = 18.671030 kcal Electronic energy + Delta-G solvation = -26323.146870 eV Core-core repulsion = 22563.496443 eV Total energy + Delta-G solvation = -3759.650427 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.92971 -39.22535 -37.70431 -37.60969 -34.82027 -34.50382 -33.32503 -32.39908 -30.48751 -29.43904 -27.39425 -25.67833 -24.38693 -22.69210 -22.36546 -22.04745 -21.68783 -20.63257 -19.53747 -17.95767 -17.59168 -16.75783 -16.41684 -16.02480 -15.66074 -15.13215 -14.97942 -14.66334 -14.59329 -14.27092 -13.87372 -13.66935 -13.44530 -13.04085 -12.91348 -12.39029 -12.34664 -12.16166 -12.01387 -11.75768 -11.60140 -11.38711 -11.29759 -11.03447 -11.02517 -10.90336 -10.73420 -10.68083 -10.50846 -10.17978 -9.95412 -9.25703 -8.78164 -8.63250 -8.12731 -7.74536 -7.21647 -6.48875 -4.55098 1.44949 2.35139 2.70583 2.92294 3.08445 3.11627 3.19716 3.50048 3.53729 3.73840 3.93100 4.48072 4.64038 4.71249 4.73297 4.74518 4.88064 4.91530 5.08357 5.16570 5.37680 5.47850 5.54135 5.73330 5.77498 5.84285 5.85401 5.90464 5.96546 6.03152 6.07059 6.26577 6.35562 6.63238 6.71417 6.74200 7.04209 7.09816 7.33633 7.37646 7.61260 7.79550 7.88281 8.02656 8.21197 8.40593 8.64793 8.88603 9.95915 10.27027 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019652 B = 0.003153 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.441926 B = 8877.858452 C = 9775.214628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.140 4.140 3 C 0.108 3.892 4 N -0.561 5.561 5 C 0.516 3.484 6 O -0.514 6.514 7 C 0.508 3.492 8 O -0.496 6.496 9 N -0.609 5.609 10 C 0.351 3.649 11 C -0.319 4.319 12 C -0.049 4.049 13 C -0.284 4.284 14 C 0.279 3.721 15 C -0.433 4.433 16 H 0.087 0.913 17 C 0.071 3.929 18 N -0.720 5.720 19 Si 0.908 3.092 20 H -0.270 1.270 21 H -0.261 1.261 22 H -0.276 1.276 23 N -0.505 5.505 24 C 0.057 3.943 25 C -0.190 4.190 26 C -0.189 4.189 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.419 0.581 35 H 0.140 0.860 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.273 0.727 39 H 0.174 0.826 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.104 0.896 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.835 -2.182 11.108 17.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.179 4.179 3 C -0.014 4.014 4 N -0.293 5.293 5 C 0.299 3.701 6 O -0.389 6.389 7 C 0.289 3.711 8 O -0.372 6.372 9 N -0.253 5.253 10 C 0.117 3.883 11 C -0.343 4.343 12 C -0.073 4.073 13 C -0.307 4.307 14 C 0.153 3.847 15 C -0.465 4.465 16 H 0.105 0.895 17 C -0.154 4.154 18 N -0.342 5.342 19 Si 0.732 3.268 20 H -0.195 1.195 21 H -0.185 1.185 22 H -0.201 1.201 23 N -0.224 5.224 24 C -0.046 4.046 25 C -0.228 4.228 26 C -0.227 4.227 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.256 0.744 35 H 0.157 0.843 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.085 0.915 39 H 0.191 0.809 40 H 0.115 0.885 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.368 -1.765 10.427 17.045 hybrid contribution 0.479 0.072 -0.386 0.620 sum -12.889 -1.693 10.041 16.426 Atomic orbital electron populations 1.21685 0.94971 1.02037 1.01906 1.21899 0.96191 0.96745 1.03039 1.21670 0.78411 0.97746 1.03602 1.47263 1.06281 1.70761 1.04997 1.20154 0.88465 0.77641 0.83821 1.90769 1.69885 1.47748 1.30543 1.19805 0.87857 0.79186 0.84264 1.90421 1.68491 1.47457 1.30845 1.42896 1.07179 1.64403 1.10822 1.18450 0.82396 0.94377 0.93083 1.21842 0.95456 1.14846 1.02176 1.20823 0.93688 0.96453 0.96372 1.21760 0.99114 1.12924 0.96874 1.18172 0.86271 0.88547 0.91697 1.19581 0.96467 1.30359 1.00099 0.89522 1.26050 0.94807 0.94533 1.00023 1.70067 1.09478 1.23152 1.31499 0.86304 0.80169 0.79553 0.80741 1.19545 1.18461 1.20062 1.67974 1.08214 1.22752 1.23446 1.22991 0.98942 1.02991 0.79677 1.23394 0.99288 1.01821 0.98285 1.23350 1.03287 0.92201 1.03912 0.92344 0.92691 0.92406 0.91341 0.91409 0.90031 0.89358 0.74361 0.84268 0.88135 0.88067 0.91540 0.80949 0.88458 0.87789 0.87760 0.88917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 37.16 0.37 -0.72 16 2 C -0.14 -1.32 6.26 -26.73 -0.17 -1.49 16 3 C 0.11 1.12 4.89 -4.04 -0.02 1.10 16 4 N -0.56 -7.34 2.80 -166.64 -0.47 -7.80 16 5 C 0.52 8.47 7.73 -11.63 -0.09 8.38 16 6 O -0.51 -9.30 16.06 5.49 0.09 -9.21 16 7 C 0.51 9.48 7.66 -11.63 -0.09 9.39 16 8 O -0.50 -9.39 9.72 5.49 0.05 -9.33 16 9 N -0.61 -12.90 5.39 -11.83 -0.06 -12.97 16 10 C 0.35 8.67 7.55 -155.08 -1.17 7.50 16 11 C -0.32 -7.48 8.91 -38.88 -0.35 -7.83 16 12 C -0.05 -1.11 10.15 -39.39 -0.40 -1.51 16 13 C -0.28 -6.97 9.83 -38.65 -0.38 -7.35 16 14 C 0.28 7.62 6.53 -85.00 -0.56 7.06 16 15 C -0.43 -11.45 9.13 -37.73 -0.34 -11.80 16 16 H 0.09 2.13 7.85 -52.49 -0.41 1.72 16 17 C 0.07 1.79 5.48 -17.35 -0.10 1.69 16 18 N -0.72 -18.92 11.52 55.55 0.64 -18.28 16 19 Si 0.91 18.44 29.56 -169.99 -5.03 13.42 16 20 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 21 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 22 H -0.28 -5.52 7.11 56.52 0.40 -5.11 16 23 N -0.51 -13.80 7.95 -10.27 -0.08 -13.89 16 24 C 0.06 0.69 5.51 -67.93 -0.37 0.31 16 25 C -0.19 -1.66 9.71 -26.73 -0.26 -1.92 16 26 C -0.19 -1.94 10.38 -26.73 -0.28 -2.21 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.68 6.14 -51.93 -0.32 0.36 16 33 H 0.09 1.01 7.38 -51.93 -0.38 0.62 16 34 H 0.42 8.70 8.33 -40.82 -0.34 8.36 16 35 H 0.14 3.10 5.01 -53.42 -0.27 2.83 16 36 H 0.10 1.95 8.06 -52.48 -0.42 1.53 16 37 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 38 H 0.27 6.53 8.29 -40.82 -0.34 6.19 16 39 H 0.17 2.39 5.21 -51.82 -0.27 2.12 16 40 H 0.10 0.74 6.21 -51.93 -0.32 0.41 16 41 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 359.65 15.07 5.42 5.42 Total: -1.00 -29.71 359.65 -9.31 -39.03 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -5.68 Total: 13.01 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -4.20 Total: 0.60 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: 0.03 Total: -52.93 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: 0.14 Total: -18.54 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.03 Total: 13.42 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.71 -9.31 -39.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889901075.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.697 kcal (2) G-P(sol) polarization free energy of solvation -29.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds