Wall clock time and date at job start Tue Mar 31 2020 11:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47129 * 2 1 4 4 N 1.46506 * 109.46726 * 179.97438 * 3 2 1 5 5 C 1.34781 * 119.99779 * 90.00171 * 4 3 2 6 6 O 1.21360 * 119.99757 * 3.60527 * 5 4 3 7 7 C 1.49361 * 119.99814 * 183.61033 * 5 4 3 8 8 O 1.21359 * 120.00370 * 5.53385 * 7 5 4 9 9 N 1.34777 * 119.99717 * 185.53233 * 7 5 4 10 10 C 1.39118 * 119.99795 * 185.55517 * 9 7 5 11 11 C 1.39708 * 119.58100 * 14.14149 * 10 9 7 12 12 C 1.38644 * 119.49375 * 180.02562 * 11 10 9 13 13 C 1.38340 * 118.67779 * 359.97438 * 12 11 10 14 14 C 1.40599 * 119.13144 * 359.97438 * 13 12 11 15 15 C 1.41338 * 119.78745 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99872 * 5.59311 * 15 14 13 17 17 C 1.40030 * 120.00286 * 185.59348 * 15 14 13 18 18 N 1.30740 * 119.99631 * 5.60085 * 17 15 14 19 19 Si 1.86798 * 119.99803 * 185.60272 * 17 15 14 20 20 H 1.48504 * 109.47112 * 264.99887 * 19 17 15 21 21 H 1.48495 * 109.47602 * 25.00353 * 19 17 15 22 22 H 1.48498 * 109.46938 * 145.00632 * 19 17 15 23 23 N 1.31939 * 119.57815 * 194.40011 * 10 9 7 24 24 C 1.46500 * 120.00158 * 270.00263 * 4 3 2 25 25 C 1.53000 * 117.49752 * 1.41016 * 24 4 3 26 26 C 1.53003 * 60.00099 * 252.51701 * 25 24 4 27 27 H 1.08998 * 109.47417 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47198 * 300.00723 * 1 2 3 29 29 H 1.09003 * 109.46760 * 59.99874 * 1 2 3 30 30 H 1.09000 * 109.46588 * 239.99706 * 2 1 3 31 31 H 1.09003 * 109.46760 * 120.00126 * 2 1 3 32 32 H 1.08997 * 109.47119 * 60.00335 * 3 2 1 33 33 H 1.08995 * 109.46966 * 299.99268 * 3 2 1 34 34 H 0.96993 * 120.00533 * 5.56009 * 9 7 5 35 35 H 1.08005 * 120.24674 * 0.02562 * 11 10 9 36 36 H 1.08005 * 120.66459 * 179.97438 * 12 11 10 37 37 H 1.08001 * 120.43538 * 180.02562 * 13 12 11 38 38 H 0.97005 * 119.99563 * 179.97438 * 18 17 15 39 39 H 1.08997 * 115.55151 * 147.12528 * 24 4 3 40 40 H 1.09002 * 117.49738 * 0.02562 * 25 24 4 41 41 H 1.08995 * 117.49835 * 145.02651 * 25 24 4 42 42 H 1.09003 * 117.49434 * 252.51598 * 26 25 24 43 43 H 1.08997 * 117.52266 * 107.48570 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1794 1.4422 -1.1664 6 8 3.5748 1.5082 -2.2165 7 6 5.6708 1.3606 -1.1670 8 8 6.2699 1.1935 -0.1249 9 7 6.3513 1.4726 -2.3250 10 6 7.7292 1.2817 -2.3433 11 6 8.3583 0.6914 -1.2445 12 6 9.7317 0.5026 -1.2644 13 6 10.4413 0.9074 -2.3808 14 6 9.7503 1.4943 -3.4554 15 6 10.4616 1.9134 -4.6026 16 1 11.5169 1.7015 -4.6910 17 6 9.7981 2.6035 -5.6246 18 7 8.5486 2.9564 -5.4707 19 14 10.6982 3.0198 -7.2075 20 1 11.2466 4.3969 -7.1177 21 1 11.8096 2.0567 -7.4130 22 1 9.7537 2.9368 -8.3505 23 7 8.4258 1.6652 -3.3961 24 6 4.2371 1.4425 1.2696 25 6 3.4148 1.4093 2.5595 26 6 4.1347 2.6938 2.1440 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6768 1.9562 -0.8900 34 1 5.8804 1.6863 -3.1456 35 1 7.7792 0.3846 -0.3860 36 1 10.2375 0.0485 -0.4251 37 1 11.5120 0.7735 -2.4267 38 1 8.0891 3.4347 -6.1785 39 1 5.1873 0.9086 1.2643 40 1 2.3292 1.3869 2.4638 41 1 3.8240 0.8533 3.4030 42 1 5.0175 2.9829 2.7143 43 1 3.5231 3.5171 1.7750 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889901075.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:55 Heat of formation + Delta-G solvation = 1.737683 kcal Electronic energy + Delta-G solvation = -26323.881155 eV Core-core repulsion = 22563.496443 eV Total energy + Delta-G solvation = -3760.384712 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.31955 -40.70886 -39.34978 -38.78017 -36.21126 -35.63445 -35.15149 -33.38255 -32.38294 -31.28261 -28.47560 -27.44472 -25.75765 -23.72831 -23.61080 -23.20928 -23.07922 -22.07263 -20.91275 -19.45825 -19.12420 -18.22487 -17.92329 -17.31965 -17.01791 -16.64883 -16.41397 -16.09663 -15.83608 -15.56549 -15.28978 -14.99752 -14.69761 -14.50475 -14.23937 -13.94428 -13.82117 -13.19514 -13.06027 -12.95811 -12.77366 -12.67038 -12.57628 -12.51970 -12.30650 -12.12360 -11.91003 -11.82195 -11.76443 -11.65249 -11.51850 -11.07045 -10.20306 -10.02895 -9.70363 -9.66688 -9.08753 -8.36387 -6.53177 -0.01385 0.90927 1.07637 1.14042 1.41789 1.52981 1.57252 2.00333 2.22427 2.23684 2.84484 2.89116 3.05141 3.77321 3.88372 3.89344 3.94325 4.07630 4.12166 4.28875 4.35089 4.44716 4.51415 4.59776 4.76284 4.76972 4.82748 4.86311 4.87485 5.00508 5.08536 5.14177 5.16685 5.20206 5.22625 5.25646 5.42866 5.53557 5.57337 5.82900 5.91213 6.00214 6.20050 6.28605 6.55896 6.72594 6.79736 6.95598 8.04183 8.42159 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019652 B = 0.003153 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.441926 B = 8877.858452 C = 9775.214628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.135 4.135 3 C 0.103 3.897 4 N -0.545 5.545 5 C 0.517 3.483 6 O -0.539 6.539 7 C 0.508 3.492 8 O -0.497 6.497 9 N -0.617 5.617 10 C 0.339 3.661 11 C -0.325 4.325 12 C -0.045 4.045 13 C -0.301 4.301 14 C 0.245 3.755 15 C -0.465 4.465 16 H 0.095 0.905 17 C 0.025 3.975 18 N -0.758 5.758 19 Si 0.989 3.011 20 H -0.263 1.263 21 H -0.254 1.254 22 H -0.270 1.270 23 N -0.537 5.537 24 C 0.022 3.978 25 C -0.155 4.155 26 C -0.188 4.188 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.052 0.948 30 H 0.041 0.959 31 H 0.076 0.924 32 H 0.113 0.887 33 H 0.077 0.923 34 H 0.417 0.583 35 H 0.152 0.848 36 H 0.139 0.861 37 H 0.117 0.883 38 H 0.279 0.721 39 H 0.152 0.848 40 H 0.117 0.883 41 H 0.121 0.879 42 H 0.105 0.895 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.826 -2.246 12.767 18.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.174 4.174 3 C -0.017 4.017 4 N -0.275 5.275 5 C 0.299 3.701 6 O -0.417 6.417 7 C 0.291 3.709 8 O -0.373 6.373 9 N -0.262 5.262 10 C 0.104 3.896 11 C -0.349 4.349 12 C -0.069 4.069 13 C -0.323 4.323 14 C 0.119 3.881 15 C -0.496 4.496 16 H 0.113 0.887 17 C -0.196 4.196 18 N -0.380 5.380 19 Si 0.809 3.191 20 H -0.188 1.188 21 H -0.177 1.177 22 H -0.195 1.195 23 N -0.257 5.257 24 C -0.081 4.081 25 C -0.192 4.192 26 C -0.227 4.227 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.131 0.869 33 H 0.096 0.904 34 H 0.254 0.746 35 H 0.169 0.831 36 H 0.156 0.844 37 H 0.135 0.865 38 H 0.090 0.910 39 H 0.169 0.831 40 H 0.135 0.865 41 H 0.139 0.861 42 H 0.123 0.877 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -14.390 -1.842 12.169 18.935 hybrid contribution 0.710 0.058 -0.703 1.000 sum -13.680 -1.784 11.466 17.939 Atomic orbital electron populations 1.21665 0.93071 1.02734 1.02694 1.21855 0.97751 0.95595 1.02177 1.21954 0.76364 0.98809 1.04610 1.47341 1.07420 1.68446 1.04324 1.19694 0.87129 0.78514 0.84759 1.90760 1.69709 1.49676 1.31547 1.20324 0.89091 0.78117 0.83396 1.90411 1.69178 1.47018 1.30662 1.42960 1.06150 1.65350 1.11737 1.18819 0.83697 0.94061 0.92998 1.22136 0.96130 1.14509 1.02156 1.21236 0.93499 0.95325 0.96866 1.21966 1.00033 1.13359 0.96958 1.18698 0.86875 0.89484 0.93050 1.19973 0.97142 1.31500 1.01007 0.88670 1.27001 0.95508 0.93780 1.03348 1.70170 1.11129 1.23794 1.32886 0.85093 0.78790 0.79439 0.75757 1.18771 1.17706 1.19512 1.67963 1.08750 1.24134 1.24856 1.22937 0.99599 1.05220 0.80361 1.23514 1.00005 0.99760 0.95951 1.23404 1.03868 0.92351 1.03051 0.91741 0.90683 0.92845 0.94006 0.90493 0.86884 0.90444 0.74585 0.83078 0.84368 0.86483 0.91008 0.83078 0.86483 0.86077 0.87660 0.88545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.91 71.98 0.71 -1.05 16 2 C -0.14 -2.32 6.26 30.59 0.19 -2.12 16 3 C 0.10 1.96 4.89 86.38 0.42 2.38 16 4 N -0.54 -13.76 2.80 -799.49 -2.24 -15.99 16 5 C 0.52 17.25 7.73 87.24 0.67 17.92 16 6 O -0.54 -20.09 16.06 -3.28 -0.05 -20.15 16 7 C 0.51 19.50 7.66 87.24 0.67 20.17 16 8 O -0.50 -19.01 9.72 -3.28 -0.03 -19.04 16 9 N -0.62 -27.32 5.39 -309.70 -1.67 -28.99 16 10 C 0.34 17.28 7.55 133.30 1.01 18.29 16 11 C -0.32 -15.38 8.91 22.72 0.20 -15.18 16 12 C -0.04 -2.03 10.15 22.39 0.23 -1.80 16 13 C -0.30 -14.92 9.83 22.87 0.22 -14.70 16 14 C 0.25 13.79 6.53 40.20 0.26 14.06 16 15 C -0.46 -25.20 9.13 23.47 0.21 -24.98 16 16 H 0.10 4.77 7.85 -2.91 -0.02 4.75 16 17 C 0.03 1.30 5.48 85.29 0.47 1.77 16 18 N -0.76 -41.08 11.52 21.84 0.25 -40.83 16 19 Si 0.99 38.19 29.56 68.60 2.03 40.22 16 20 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 21 H -0.25 -9.39 7.11 99.48 0.71 -8.68 16 22 H -0.27 -10.10 7.11 99.48 0.71 -9.40 16 23 N -0.54 -30.56 7.95 -186.42 -1.48 -32.04 16 24 C 0.02 0.49 5.51 44.99 0.25 0.74 16 25 C -0.16 -2.13 9.71 30.60 0.30 -1.84 16 26 C -0.19 -3.41 10.38 30.60 0.32 -3.09 16 27 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.11 1.45 6.14 -2.39 -0.01 1.44 16 33 H 0.08 1.69 7.38 -2.39 -0.02 1.67 16 34 H 0.42 18.41 8.33 -92.71 -0.77 17.64 16 35 H 0.15 6.71 5.01 -21.56 -0.11 6.60 16 36 H 0.14 5.08 8.06 -2.91 -0.02 5.05 16 37 H 0.12 5.26 8.06 -2.91 -0.02 5.23 16 38 H 0.28 13.73 8.29 -92.70 -0.77 12.96 16 39 H 0.15 4.10 5.21 -4.52 -0.02 4.08 16 40 H 0.12 1.18 6.21 -2.39 -0.01 1.17 16 41 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -66.98 359.65 3.12 -63.86 By element: Atomic # 1 Polarization: 42.24 SS G_CDS: 0.18 Total: 42.42 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: 6.14 Total: 10.54 kcal Atomic # 7 Polarization: -112.72 SS G_CDS: -5.14 Total: -117.86 kcal Atomic # 8 Polarization: -39.10 SS G_CDS: -0.08 Total: -39.19 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 2.03 Total: 40.22 kcal Total: -66.98 3.12 -63.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889901075.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.599 kcal (2) G-P(sol) polarization free energy of solvation -66.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds