Wall clock time and date at job start Tue Mar 31 2020 12:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 110.01834 * 2 1 4 4 C 1.54272 * 110.07109 * 121.40959 * 2 1 3 5 5 C 1.54884 * 104.19562 * 142.91712 * 4 2 1 6 6 C 1.54887 * 102.74956 * 322.06112 * 5 4 2 7 7 C 1.53868 * 110.03378 * 238.60048 * 2 1 3 8 8 H 1.09006 * 110.03248 * 121.34106 * 7 2 1 9 9 N 1.46495 * 110.03404 * 359.95342 * 7 2 1 10 10 C 1.34778 * 120.00011 * 154.99587 * 9 7 2 11 11 O 1.21364 * 120.00287 * 0.02562 * 10 9 7 12 12 C 1.49362 * 120.00202 * 180.02562 * 10 9 7 13 13 O 1.21360 * 120.00150 * 0.02562 * 12 10 9 14 14 N 1.34778 * 120.00202 * 180.02562 * 12 10 9 15 15 C 1.39117 * 119.99862 * 185.15218 * 14 12 10 16 16 C 1.39709 * 119.57635 * 174.72089 * 15 14 12 17 17 C 1.38656 * 119.49229 * 179.72577 * 16 15 14 18 18 C 1.38346 * 118.66692 * 0.53973 * 17 16 15 19 19 C 1.40591 * 119.14213 * 359.72962 * 18 17 16 20 20 C 1.41334 * 119.78873 * 180.02562 * 19 18 17 21 21 H 1.08005 * 119.99538 * 359.97438 * 20 19 18 22 22 C 1.40029 * 119.99995 * 179.97438 * 20 19 18 23 23 N 1.30744 * 120.00029 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 119.99873 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47190 * 59.99699 * 24 22 20 26 26 H 1.48497 * 109.47268 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47383 * 299.99926 * 24 22 20 28 28 N 1.31934 * 119.58192 * 355.00000 * 15 14 12 29 29 H 1.09001 * 109.47458 * 181.39473 * 1 2 3 30 30 H 1.08998 * 109.47394 * 301.39640 * 1 2 3 31 31 H 1.09005 * 109.47017 * 61.39649 * 1 2 3 32 32 H 1.08992 * 110.49012 * 261.59766 * 4 2 1 33 33 H 1.09008 * 110.48161 * 24.10991 * 4 2 1 34 34 H 1.09000 * 110.75766 * 80.37311 * 5 4 2 35 35 H 1.09001 * 110.75656 * 203.56207 * 5 4 2 36 36 H 1.09004 * 110.48764 * 279.26062 * 6 5 4 37 37 H 1.09006 * 110.49029 * 156.61904 * 6 5 4 38 38 H 0.96994 * 120.00048 * 335.00209 * 9 7 2 39 39 H 0.96998 * 120.00240 * 5.15387 * 14 12 10 40 40 H 1.08004 * 120.25395 * 359.97438 * 16 15 14 41 41 H 1.07999 * 120.66012 * 180.26619 * 17 16 15 42 42 H 1.08005 * 120.42400 * 179.74906 * 18 17 16 43 43 H 0.96999 * 119.99322 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0594 -0.7552 1.2367 5 6 3.3149 -1.4996 0.7185 6 6 2.8885 -1.9397 -0.7040 7 6 2.0571 -0.7532 -1.2339 8 1 2.6855 -0.0943 -1.8333 9 7 0.9360 -1.2454 -2.0382 10 6 1.1008 -1.4723 -3.3565 11 8 2.1781 -1.2693 -3.8772 12 6 -0.0424 -1.9737 -4.1767 13 8 -1.1198 -2.1763 -3.6562 14 7 0.1226 -2.2011 -5.4948 15 6 -0.9670 -2.5647 -6.2796 16 6 -0.8097 -2.6903 -7.6622 17 6 -1.8955 -3.0584 -8.4420 18 6 -3.1125 -3.2804 -7.8228 19 6 -3.2082 -3.1321 -6.4280 20 6 -4.4447 -3.3561 -5.7812 21 1 -5.3124 -3.6398 -6.3584 22 6 -4.5448 -3.2102 -4.3921 23 7 -3.4943 -2.8673 -3.6934 24 14 -6.1793 -3.5056 -3.5374 25 1 -6.6220 -4.9014 -3.7845 26 1 -6.0207 -3.2882 -2.0771 27 1 -7.1947 -2.5626 -4.0713 28 7 -2.1370 -2.7811 -5.7095 29 1 -0.3634 -1.0273 0.0250 30 1 -0.3634 0.5353 0.8772 31 1 -0.3633 0.4920 -0.9023 32 1 2.3305 -0.0532 2.0252 33 1 1.3148 -1.4646 1.5981 34 1 4.1718 -0.8273 0.6742 35 1 3.5364 -2.3647 1.3434 36 1 2.2788 -2.8421 -0.6575 37 1 3.7646 -2.1021 -1.3319 38 1 0.0751 -1.4079 -1.6220 39 1 1.0010 -2.1112 -5.8963 40 1 0.1512 -2.5060 -8.1195 41 1 -1.7941 -3.1652 -9.5119 42 1 -3.9779 -3.5643 -8.4034 43 1 -3.5637 -2.7666 -2.7312 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889904001.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:23 Heat of formation + Delta-G solvation = -16.183675 kcal Electronic energy + Delta-G solvation = -26691.946756 eV Core-core repulsion = 22930.784916 eV Total energy + Delta-G solvation = -3761.161840 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.45313 -39.14892 -38.01590 -37.08850 -34.49111 -33.55695 -32.94806 -31.40979 -30.38075 -29.23256 -28.04143 -25.76609 -25.34583 -24.19089 -21.79749 -21.21238 -20.90764 -19.66665 -19.43242 -18.31685 -17.21614 -16.58049 -16.11007 -15.55557 -15.30617 -15.23593 -14.70922 -14.47852 -14.30186 -13.85918 -13.74790 -13.57703 -13.28468 -12.89167 -12.84401 -12.47972 -12.16405 -12.00480 -11.92745 -11.27259 -11.18545 -11.12230 -11.03701 -11.00479 -10.94423 -10.84415 -10.71956 -10.69647 -10.51581 -9.99563 -9.78939 -9.08819 -9.05709 -8.96241 -8.03239 -7.32697 -7.05532 -6.21938 -4.45387 1.94576 2.82030 2.85436 3.09451 3.12104 3.14804 3.24096 3.97638 4.01399 4.09510 4.30329 4.40963 4.64047 4.86791 5.00563 5.07501 5.17512 5.26773 5.29715 5.32935 5.43784 5.61131 5.66998 5.73396 5.86859 5.97032 5.97243 6.03745 6.06721 6.12010 6.15322 6.42771 6.50313 6.58550 6.75773 6.79679 7.15531 7.32488 7.51415 7.53767 7.76394 7.91601 8.06221 8.20219 8.37081 8.63511 8.94009 9.02064 10.14796 10.41339 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013583 B = 0.004092 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.899824 B = 6840.154543 C = 8615.728716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.103 4.103 3 H 0.081 0.919 4 C -0.120 4.120 5 C -0.123 4.123 6 C -0.136 4.136 7 C 0.142 3.858 8 H 0.092 0.908 9 N -0.701 5.701 10 C 0.507 3.493 11 O -0.536 6.536 12 C 0.465 3.535 13 O -0.388 6.388 14 N -0.639 5.639 15 C 0.368 3.632 16 C -0.349 4.349 17 C -0.036 4.036 18 C -0.301 4.301 19 C 0.272 3.728 20 C -0.424 4.424 21 H 0.083 0.917 22 C 0.060 3.940 23 N -0.663 5.663 24 Si 0.898 3.102 25 H -0.267 1.267 26 H -0.279 1.279 27 H -0.267 1.267 28 N -0.475 5.475 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.415 0.585 39 H 0.411 0.589 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.779 4.257 10.136 14.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.122 4.122 3 H 0.100 0.900 4 C -0.158 4.158 5 C -0.161 4.161 6 C -0.174 4.174 7 C 0.037 3.963 8 H 0.111 0.889 9 N -0.358 5.358 10 C 0.289 3.711 11 O -0.413 6.413 12 C 0.242 3.758 13 O -0.250 6.250 14 N -0.287 5.287 15 C 0.130 3.870 16 C -0.375 4.375 17 C -0.060 4.060 18 C -0.324 4.324 19 C 0.147 3.853 20 C -0.455 4.455 21 H 0.101 0.899 22 C -0.169 4.169 23 N -0.281 5.281 24 Si 0.722 3.278 25 H -0.191 1.191 26 H -0.204 1.204 27 H -0.191 1.191 28 N -0.194 5.194 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.256 0.744 39 H 0.247 0.753 40 H 0.113 0.887 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.690 4.419 11.369 15.578 hybrid contribution -0.441 -0.221 -0.644 0.811 sum 9.249 4.199 10.725 14.772 Atomic orbital electron populations 1.21876 0.94416 1.02305 1.02598 1.22016 0.96567 0.99649 0.93948 0.90035 1.22465 0.97504 0.99057 0.96772 1.22449 0.97657 1.00066 0.95950 1.22809 1.00105 0.98315 0.96219 1.21697 0.87592 0.95461 0.91529 0.88946 1.46184 1.15785 1.65822 1.07976 1.20850 0.88986 0.78022 0.83278 1.90683 1.27466 1.51090 1.72013 1.20170 0.89028 0.82777 0.83843 1.91205 1.23270 1.41336 1.69237 1.43002 1.11124 1.67068 1.07552 1.18553 0.88131 0.93702 0.86578 1.20520 0.99605 1.24900 0.92447 1.20585 0.92761 0.95467 0.97209 1.21650 0.97203 1.17241 0.96328 1.18356 0.91292 0.87958 0.87744 1.19556 0.94766 1.39108 0.92073 0.89895 1.26157 0.97499 0.94993 0.98235 1.70302 1.27322 1.23465 1.07057 0.86551 0.82972 0.79807 0.78445 1.19146 1.20380 1.19142 1.68645 0.96155 1.19038 1.35543 0.91969 0.92031 0.91679 0.91467 0.91159 0.91332 0.91328 0.90900 0.90965 0.74445 0.75335 0.88733 0.88370 0.88390 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 7.73 37.16 0.29 -1.22 16 2 C -0.10 -0.94 3.50 -89.50 -0.31 -1.26 16 3 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 4 C -0.12 -0.95 6.36 -25.07 -0.16 -1.11 16 5 C -0.12 -1.00 6.91 -24.74 -0.17 -1.17 16 6 C -0.14 -1.43 6.53 -25.07 -0.16 -1.60 16 7 C 0.14 1.63 3.23 -66.82 -0.22 1.42 16 8 H 0.09 1.15 7.57 -51.93 -0.39 0.76 16 9 N -0.70 -9.92 4.46 -53.18 -0.24 -10.16 16 10 C 0.51 8.81 7.88 -11.63 -0.09 8.72 16 11 O -0.54 -9.82 16.14 5.48 0.09 -9.73 16 12 C 0.47 9.68 7.84 -11.63 -0.09 9.59 16 13 O -0.39 -9.22 12.24 5.49 0.07 -9.16 16 14 N -0.64 -13.42 5.37 -11.83 -0.06 -13.49 16 15 C 0.37 9.06 7.43 -155.09 -1.15 7.91 16 16 C -0.35 -7.91 9.96 -38.88 -0.39 -8.29 16 17 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 18 C -0.30 -7.48 9.83 -38.65 -0.38 -7.86 16 19 C 0.27 7.51 6.55 -85.00 -0.56 6.95 16 20 C -0.42 -11.41 9.14 -37.73 -0.34 -11.76 16 21 H 0.08 2.08 7.85 -52.48 -0.41 1.67 16 22 C 0.06 1.53 5.50 -17.34 -0.10 1.43 16 23 N -0.66 -17.55 8.99 55.55 0.50 -17.05 16 24 Si 0.90 18.66 29.56 -169.99 -5.02 13.63 16 25 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 26 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 27 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 28 N -0.47 -13.12 5.73 -10.28 -0.06 -13.18 16 29 H 0.06 0.63 6.91 -51.93 -0.36 0.27 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.72 7.72 -51.93 -0.40 0.32 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.57 7.84 -51.92 -0.41 0.16 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.83 8.05 -51.93 -0.42 0.41 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.42 5.81 5.29 -40.82 -0.22 5.60 16 39 H 0.41 7.43 8.18 -40.82 -0.33 7.10 16 40 H 0.09 1.86 8.06 -52.48 -0.42 1.44 16 41 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 42 H 0.10 2.24 8.06 -52.48 -0.42 1.82 16 43 H 0.27 6.66 8.29 -40.82 -0.34 6.32 16 LS Contribution 353.05 15.07 5.32 5.32 Total: -1.00 -30.91 353.05 -9.52 -40.43 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -5.88 Total: 12.82 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -4.23 Total: 0.55 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: 0.14 Total: -53.87 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: 0.16 Total: -18.89 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.02 Total: 13.63 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.91 -9.52 -40.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889904001.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.247 kcal (2) G-P(sol) polarization free energy of solvation -30.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds