Wall clock time and date at job start Tue Mar 31 2020 12:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 110.01834 * 2 1 4 4 C 1.54272 * 110.07109 * 121.40959 * 2 1 3 5 5 C 1.54884 * 104.19562 * 142.91712 * 4 2 1 6 6 C 1.54887 * 102.74956 * 322.06112 * 5 4 2 7 7 C 1.53868 * 110.03378 * 238.60048 * 2 1 3 8 8 H 1.09006 * 110.03248 * 121.34106 * 7 2 1 9 9 N 1.46495 * 110.03404 * 359.95342 * 7 2 1 10 10 C 1.34778 * 120.00011 * 154.99587 * 9 7 2 11 11 O 1.21364 * 120.00287 * 0.02562 * 10 9 7 12 12 C 1.49362 * 120.00202 * 180.02562 * 10 9 7 13 13 O 1.21360 * 120.00150 * 0.02562 * 12 10 9 14 14 N 1.34778 * 120.00202 * 180.02562 * 12 10 9 15 15 C 1.39117 * 119.99862 * 185.15218 * 14 12 10 16 16 C 1.39709 * 119.57635 * 174.72089 * 15 14 12 17 17 C 1.38656 * 119.49229 * 179.72577 * 16 15 14 18 18 C 1.38346 * 118.66692 * 0.53973 * 17 16 15 19 19 C 1.40591 * 119.14213 * 359.72962 * 18 17 16 20 20 C 1.41334 * 119.78873 * 180.02562 * 19 18 17 21 21 H 1.08005 * 119.99538 * 359.97438 * 20 19 18 22 22 C 1.40029 * 119.99995 * 179.97438 * 20 19 18 23 23 N 1.30744 * 120.00029 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 119.99873 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47190 * 59.99699 * 24 22 20 26 26 H 1.48497 * 109.47268 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47383 * 299.99926 * 24 22 20 28 28 N 1.31934 * 119.58192 * 355.00000 * 15 14 12 29 29 H 1.09001 * 109.47458 * 181.39473 * 1 2 3 30 30 H 1.08998 * 109.47394 * 301.39640 * 1 2 3 31 31 H 1.09005 * 109.47017 * 61.39649 * 1 2 3 32 32 H 1.08992 * 110.49012 * 261.59766 * 4 2 1 33 33 H 1.09008 * 110.48161 * 24.10991 * 4 2 1 34 34 H 1.09000 * 110.75766 * 80.37311 * 5 4 2 35 35 H 1.09001 * 110.75656 * 203.56207 * 5 4 2 36 36 H 1.09004 * 110.48764 * 279.26062 * 6 5 4 37 37 H 1.09006 * 110.49029 * 156.61904 * 6 5 4 38 38 H 0.96994 * 120.00048 * 335.00209 * 9 7 2 39 39 H 0.96998 * 120.00240 * 5.15387 * 14 12 10 40 40 H 1.08004 * 120.25395 * 359.97438 * 16 15 14 41 41 H 1.07999 * 120.66012 * 180.26619 * 17 16 15 42 42 H 1.08005 * 120.42400 * 179.74906 * 18 17 16 43 43 H 0.96999 * 119.99322 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0594 -0.7552 1.2367 5 6 3.3149 -1.4996 0.7185 6 6 2.8885 -1.9397 -0.7040 7 6 2.0571 -0.7532 -1.2339 8 1 2.6855 -0.0943 -1.8333 9 7 0.9360 -1.2454 -2.0382 10 6 1.1008 -1.4723 -3.3565 11 8 2.1781 -1.2693 -3.8772 12 6 -0.0424 -1.9737 -4.1767 13 8 -1.1198 -2.1763 -3.6562 14 7 0.1226 -2.2011 -5.4948 15 6 -0.9670 -2.5647 -6.2796 16 6 -0.8097 -2.6903 -7.6622 17 6 -1.8955 -3.0584 -8.4420 18 6 -3.1125 -3.2804 -7.8228 19 6 -3.2082 -3.1321 -6.4280 20 6 -4.4447 -3.3561 -5.7812 21 1 -5.3124 -3.6398 -6.3584 22 6 -4.5448 -3.2102 -4.3921 23 7 -3.4943 -2.8673 -3.6934 24 14 -6.1793 -3.5056 -3.5374 25 1 -6.6220 -4.9014 -3.7845 26 1 -6.0207 -3.2882 -2.0771 27 1 -7.1947 -2.5626 -4.0713 28 7 -2.1370 -2.7811 -5.7095 29 1 -0.3634 -1.0273 0.0250 30 1 -0.3634 0.5353 0.8772 31 1 -0.3633 0.4920 -0.9023 32 1 2.3305 -0.0532 2.0252 33 1 1.3148 -1.4646 1.5981 34 1 4.1718 -0.8273 0.6742 35 1 3.5364 -2.3647 1.3434 36 1 2.2788 -2.8421 -0.6575 37 1 3.7646 -2.1021 -1.3319 38 1 0.0751 -1.4079 -1.6220 39 1 1.0010 -2.1112 -5.8963 40 1 0.1512 -2.5060 -8.1195 41 1 -1.7941 -3.1652 -9.5119 42 1 -3.9779 -3.5643 -8.4034 43 1 -3.5637 -2.7666 -2.7312 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889904001.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:22 Heat of formation + Delta-G solvation = -34.530878 kcal Electronic energy + Delta-G solvation = -26692.742351 eV Core-core repulsion = 22930.784916 eV Total energy + Delta-G solvation = -3761.957435 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.85126 -40.60947 -39.42896 -38.65616 -36.19534 -35.09346 -34.48180 -32.27455 -32.21491 -31.08998 -29.03536 -27.60671 -26.26730 -25.63137 -23.55003 -22.92088 -21.70879 -21.18126 -20.46510 -19.93862 -18.89733 -18.11936 -17.54672 -16.79411 -16.62642 -16.49295 -16.31318 -16.23021 -15.63344 -15.35731 -15.15904 -14.80635 -14.63606 -14.56649 -13.88460 -13.77413 -13.70213 -13.29384 -12.99216 -12.86803 -12.75115 -12.58909 -12.54325 -12.30922 -11.98977 -11.92264 -11.78617 -11.74363 -11.59893 -11.53560 -11.49935 -10.91691 -10.60732 -10.22385 -9.94094 -9.20218 -8.92758 -8.08757 -6.43196 0.37268 1.03215 1.26907 1.42039 1.42437 1.53048 1.56105 2.27582 2.37434 2.68872 2.97974 3.43767 3.56797 3.64070 3.87552 4.01087 4.28858 4.32221 4.37803 4.45869 4.49179 4.53801 4.66692 4.72161 4.81137 4.83581 4.90809 4.93716 4.98325 5.01816 5.15892 5.19064 5.24977 5.25944 5.29182 5.40716 5.48731 5.63007 5.70911 5.89232 6.00199 6.16372 6.29322 6.54166 6.71933 6.85998 7.03353 7.28650 8.24658 8.55288 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013583 B = 0.004092 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.899824 B = 6840.154543 C = 8615.728716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.097 4.097 3 H 0.096 0.904 4 C -0.115 4.115 5 C -0.116 4.116 6 C -0.136 4.136 7 C 0.135 3.865 8 H 0.085 0.915 9 N -0.686 5.686 10 C 0.516 3.484 11 O -0.546 6.546 12 C 0.458 3.542 13 O -0.420 6.420 14 N -0.633 5.633 15 C 0.347 3.653 16 C -0.343 4.343 17 C -0.033 4.033 18 C -0.322 4.322 19 C 0.237 3.763 20 C -0.462 4.462 21 H 0.088 0.912 22 C 0.015 3.985 23 N -0.694 5.694 24 Si 0.976 3.024 25 H -0.262 1.262 26 H -0.271 1.271 27 H -0.262 1.262 28 N -0.506 5.506 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.046 0.954 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.416 0.584 39 H 0.424 0.576 40 H 0.129 0.871 41 H 0.140 0.860 42 H 0.109 0.891 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.608 4.743 11.127 16.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.116 4.116 3 H 0.114 0.886 4 C -0.153 4.153 5 C -0.153 4.153 6 C -0.175 4.175 7 C 0.031 3.969 8 H 0.103 0.897 9 N -0.341 5.341 10 C 0.296 3.704 11 O -0.425 6.425 12 C 0.236 3.764 13 O -0.285 6.285 14 N -0.283 5.283 15 C 0.109 3.891 16 C -0.369 4.369 17 C -0.057 4.057 18 C -0.345 4.345 19 C 0.112 3.888 20 C -0.493 4.493 21 H 0.106 0.894 22 C -0.211 4.211 23 N -0.313 5.313 24 Si 0.797 3.203 25 H -0.187 1.187 26 H -0.195 1.195 27 H -0.187 1.187 28 N -0.226 5.226 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.065 0.935 32 H 0.106 0.894 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.257 0.743 39 H 0.262 0.738 40 H 0.147 0.853 41 H 0.157 0.843 42 H 0.127 0.873 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.565 4.917 12.366 16.991 hybrid contribution -0.578 -0.349 -1.036 1.237 sum 9.987 4.568 11.329 15.778 Atomic orbital electron populations 1.21863 0.94971 1.01830 1.02513 1.22030 0.95985 1.00262 0.93294 0.88603 1.22460 0.97188 0.99227 0.96428 1.22438 0.98143 1.00736 0.94031 1.22788 0.99380 0.97355 0.97975 1.22002 0.86760 0.96106 0.92015 0.89665 1.46252 1.16708 1.64251 1.06911 1.20173 0.87634 0.78518 0.84044 1.90677 1.27249 1.52161 1.72395 1.20809 0.89682 0.81940 0.83937 1.91200 1.24868 1.42575 1.69838 1.42997 1.10942 1.66650 1.07710 1.19011 0.88310 0.93789 0.88017 1.20963 1.01176 1.22940 0.91775 1.21046 0.91661 0.93725 0.99282 1.21854 0.98829 1.18173 0.95660 1.18855 0.91913 0.88779 0.89293 1.19904 0.95107 1.40923 0.93352 0.89427 1.26986 1.01339 0.94360 0.98401 1.70457 1.29453 1.24191 1.07230 0.85371 0.77963 0.79677 0.77324 1.18671 1.19501 1.18653 1.68600 0.97143 1.20094 1.36742 0.92737 0.90283 0.93492 0.89419 0.91307 0.90101 0.90277 0.92059 0.91673 0.74319 0.73808 0.85310 0.84274 0.87321 0.91533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 7.73 71.98 0.56 -2.31 16 2 C -0.10 -1.60 3.50 -10.07 -0.04 -1.64 16 3 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 4 C -0.12 -1.51 6.36 31.67 0.20 -1.31 16 5 C -0.12 -1.59 6.91 31.88 0.22 -1.37 16 6 C -0.14 -2.74 6.53 31.67 0.21 -2.54 16 7 C 0.13 2.99 3.23 45.71 0.15 3.14 16 8 H 0.09 2.05 7.57 -2.38 -0.02 2.04 16 9 N -0.69 -19.55 4.46 -440.53 -1.97 -21.51 16 10 C 0.52 18.13 7.88 87.24 0.69 18.82 16 11 O -0.55 -19.95 16.14 -3.29 -0.05 -20.00 16 12 C 0.46 19.59 7.84 87.24 0.68 20.27 16 13 O -0.42 -20.80 12.24 -3.28 -0.04 -20.84 16 14 N -0.63 -26.88 5.37 -309.70 -1.66 -28.54 16 15 C 0.35 17.21 7.43 133.30 0.99 18.20 16 16 C -0.34 -15.09 9.96 22.73 0.23 -14.86 16 17 C -0.03 -1.44 10.15 22.40 0.23 -1.22 16 18 C -0.32 -16.10 9.83 22.87 0.22 -15.87 16 19 C 0.24 13.49 6.55 40.20 0.26 13.75 16 20 C -0.46 -25.67 9.14 23.47 0.21 -25.45 16 21 H 0.09 4.54 7.85 -2.91 -0.02 4.52 16 22 C 0.01 0.77 5.50 85.29 0.47 1.24 16 23 N -0.69 -38.06 8.99 21.84 0.20 -37.86 16 24 Si 0.98 39.06 29.56 68.60 2.03 41.09 16 25 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 26 H -0.27 -10.31 7.11 99.48 0.71 -9.61 16 27 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 28 N -0.51 -28.82 5.73 -186.43 -1.07 -29.89 16 29 H 0.05 1.09 6.91 -2.39 -0.02 1.07 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.05 1.04 7.72 -2.38 -0.02 1.02 16 32 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.07 0.95 7.84 -2.38 -0.02 0.93 16 34 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.06 1.37 8.05 -2.39 -0.02 1.36 16 37 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 38 H 0.42 11.93 5.29 -92.71 -0.49 11.44 16 39 H 0.42 15.18 8.18 -92.71 -0.76 14.42 16 40 H 0.13 4.69 8.06 -2.91 -0.02 4.67 16 41 H 0.14 4.84 8.06 -2.91 -0.02 4.82 16 42 H 0.11 5.01 8.06 -2.91 -0.02 4.99 16 43 H 0.27 13.89 8.29 -92.71 -0.77 13.12 16 Total: -1.00 -68.81 353.05 2.52 -66.29 By element: Atomic # 1 Polarization: 42.60 SS G_CDS: -0.20 Total: 42.40 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: 5.28 Total: 8.86 kcal Atomic # 7 Polarization: -113.30 SS G_CDS: -4.50 Total: -117.80 kcal Atomic # 8 Polarization: -40.75 SS G_CDS: -0.09 Total: -40.84 kcal Atomic # 14 Polarization: 39.06 SS G_CDS: 2.03 Total: 41.09 kcal Total: -68.81 2.52 -66.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889904001.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.759 kcal (2) G-P(sol) polarization free energy of solvation -68.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds