Wall clock time and date at job start Tue Mar 31 2020 12:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 110.53857 * 2 1 4 4 C 1.54893 * 110.48766 * 237.38369 * 2 1 3 5 5 C 1.54886 * 102.74866 * 203.38240 * 4 2 1 6 6 C 1.54271 * 104.19744 * 37.94185 * 5 4 2 7 7 C 1.53878 * 106.59646 * 336.39094 * 6 5 4 8 8 H 1.09001 * 110.06958 * 119.31179 * 7 6 5 9 9 N 1.46505 * 110.02938 * 240.71331 * 7 6 5 10 10 C 1.34772 * 120.00198 * 272.16436 * 9 7 6 11 11 O 1.21358 * 119.99917 * 0.02562 * 10 9 7 12 12 C 1.49366 * 120.00286 * 180.02562 * 10 9 7 13 13 O 1.21358 * 119.99797 * 0.02562 * 12 10 9 14 14 N 1.34772 * 120.00286 * 179.97438 * 12 10 9 15 15 C 1.39109 * 120.00153 * 185.15031 * 14 12 10 16 16 C 1.39708 * 119.57781 * 174.66942 * 15 14 12 17 17 C 1.38660 * 119.49262 * 180.02562 * 16 15 14 18 18 C 1.38341 * 118.67020 * 359.97438 * 17 16 15 19 19 C 1.40597 * 119.13933 * 0.02562 * 18 17 16 20 20 C 1.41334 * 119.78833 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99813 * 359.97438 * 20 19 18 22 22 C 1.40031 * 120.00190 * 179.97438 * 20 19 18 23 23 N 1.30737 * 119.99889 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00184 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47234 * 59.99580 * 24 22 20 26 26 H 1.48498 * 109.47459 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47101 * 300.00174 * 24 22 20 28 28 N 1.31936 * 119.58009 * 354.66879 * 15 14 12 29 29 H 1.08999 * 109.47296 * 297.39399 * 1 2 3 30 30 H 1.08999 * 109.47064 * 57.39126 * 1 2 3 31 31 H 1.08998 * 109.46784 * 177.39212 * 1 2 3 32 32 H 1.09000 * 110.75372 * 321.69708 * 4 2 1 33 33 H 1.08992 * 110.75417 * 85.06517 * 4 2 1 34 34 H 1.08995 * 110.48534 * 156.61924 * 5 4 2 35 35 H 1.09001 * 110.48397 * 279.13628 * 5 4 2 36 36 H 1.08999 * 110.02963 * 217.10580 * 6 5 4 37 37 H 1.08998 * 110.03275 * 95.67372 * 6 5 4 38 38 H 0.96997 * 119.99720 * 92.17582 * 9 7 6 39 39 H 0.96998 * 119.99964 * 5.16122 * 14 12 10 40 40 H 1.08001 * 120.25630 * 0.02562 * 16 15 14 41 41 H 1.08003 * 120.66379 * 180.27703 * 17 16 15 42 42 H 1.08000 * 120.43120 * 179.97438 * 18 17 16 43 43 H 0.97002 * 120.00408 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9125 1.0207 0.0000 4 6 2.0722 -0.7821 -1.2221 5 6 3.4907 -1.1981 -0.7599 6 6 3.3165 -1.5406 0.7342 7 6 2.0699 -0.7788 1.2173 8 1 1.3173 -1.4816 1.5748 9 7 2.4345 0.1528 2.2876 10 6 2.4431 -0.2635 3.5694 11 8 2.1492 -1.4101 3.8370 12 6 2.8143 0.6864 4.6607 13 8 3.1077 1.8332 4.3932 14 7 2.8224 0.2703 5.9426 15 6 3.0630 1.1795 6.9675 16 6 2.9592 0.7633 8.2971 17 6 3.1989 1.6712 9.3174 18 6 3.5365 2.9706 8.9837 19 6 3.6249 3.3281 7.6269 20 6 3.9682 4.6520 7.2705 21 1 4.1612 5.3854 8.0395 22 6 4.0581 5.0128 5.9205 23 7 3.8249 4.1249 4.9896 24 14 4.5111 6.7628 5.4495 25 1 5.8509 7.0922 5.9989 26 1 4.5395 6.8857 3.9699 27 1 3.5037 7.7016 6.0055 28 7 3.3864 2.4240 6.6716 29 1 -0.3634 0.4728 0.9124 30 1 -0.3633 0.5538 -0.8657 31 1 -0.3633 -1.0266 -0.0468 32 1 1.4581 -1.6601 -1.4222 33 1 2.1252 -0.1383 -2.1000 34 1 3.8316 -2.0723 -1.3144 35 1 4.1903 -0.3715 -0.8847 36 1 4.1928 -1.2171 1.2960 37 1 3.1692 -2.6136 0.8566 38 1 2.6696 1.0692 2.0737 39 1 2.6606 -0.6632 6.1505 40 1 2.6942 -0.2579 8.5286 41 1 3.1283 1.3686 10.3518 42 1 3.7288 3.7012 9.7556 43 1 3.8875 4.3747 4.0544 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889904004.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:35 Heat of formation + Delta-G solvation = -24.608152 kcal Electronic energy + Delta-G solvation = -26485.007022 eV Core-core repulsion = 22723.479869 eV Total energy + Delta-G solvation = -3761.527153 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.37897 -39.09115 -38.01115 -37.09135 -34.50798 -33.56124 -32.93887 -31.50108 -30.38110 -29.23402 -28.07773 -25.81872 -25.33571 -23.95538 -21.77375 -21.26890 -20.74052 -20.16162 -19.33087 -18.20286 -17.18546 -16.81712 -16.07339 -15.54092 -15.39773 -14.94698 -14.71103 -14.47986 -14.13301 -13.95259 -13.65400 -13.55915 -13.30237 -13.24009 -12.87642 -12.39212 -12.08980 -12.00722 -11.87346 -11.56731 -11.25636 -11.18192 -11.02915 -10.99770 -10.92905 -10.82177 -10.71143 -10.69368 -10.51564 -9.99585 -9.78975 -9.08913 -9.07312 -8.96334 -8.03306 -7.32808 -7.05626 -6.21909 -4.45399 1.93887 2.81217 2.84492 3.09334 3.12310 3.14911 3.24142 3.97284 4.01480 4.08642 4.27173 4.41214 4.62263 4.86815 5.00763 5.03833 5.19125 5.25928 5.28875 5.33467 5.41456 5.61918 5.68042 5.70431 5.84670 5.95932 5.97025 5.99832 6.05039 6.06643 6.15510 6.42850 6.51073 6.58528 6.75686 6.79664 7.15547 7.31492 7.51058 7.53532 7.76370 7.91311 8.05941 8.19550 8.36977 8.63423 8.93911 9.01989 10.14759 10.41404 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013531 B = 0.003862 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.845146 B = 7248.238394 C = 8805.996415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.104 4.104 3 H 0.084 0.916 4 C -0.118 4.118 5 C -0.124 4.124 6 C -0.137 4.137 7 C 0.143 3.857 8 H 0.094 0.906 9 N -0.699 5.699 10 C 0.509 3.491 11 O -0.535 6.535 12 C 0.465 3.535 13 O -0.387 6.387 14 N -0.639 5.639 15 C 0.368 3.632 16 C -0.349 4.349 17 C -0.036 4.036 18 C -0.301 4.301 19 C 0.271 3.729 20 C -0.424 4.424 21 H 0.083 0.917 22 C 0.060 3.940 23 N -0.663 5.663 24 Si 0.898 3.102 25 H -0.267 1.267 26 H -0.279 1.279 27 H -0.267 1.267 28 N -0.475 5.475 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.413 0.587 39 H 0.411 0.589 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.121 -8.003 -12.422 15.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.123 4.123 3 H 0.102 0.898 4 C -0.156 4.156 5 C -0.162 4.162 6 C -0.175 4.175 7 C 0.038 3.962 8 H 0.112 0.888 9 N -0.353 5.353 10 C 0.290 3.710 11 O -0.412 6.412 12 C 0.242 3.758 13 O -0.250 6.250 14 N -0.288 5.288 15 C 0.130 3.870 16 C -0.375 4.375 17 C -0.060 4.060 18 C -0.324 4.324 19 C 0.146 3.854 20 C -0.455 4.455 21 H 0.101 0.899 22 C -0.169 4.169 23 N -0.282 5.282 24 Si 0.723 3.277 25 H -0.191 1.191 26 H -0.204 1.204 27 H -0.191 1.191 28 N -0.194 5.194 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.249 0.751 39 H 0.247 0.753 40 H 0.113 0.887 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.073 -7.704 -13.622 15.948 hybrid contribution 0.156 0.329 0.754 0.837 sum -2.917 -7.375 -12.868 15.116 Atomic orbital electron populations 1.21807 0.94271 1.02017 1.02136 1.22268 0.96245 0.99831 0.93926 0.89817 1.22539 0.96212 0.99798 0.97008 1.22355 0.97073 1.01270 0.95518 1.22597 0.98256 1.00609 0.96065 1.21794 0.96784 0.91331 0.86265 0.88819 1.45930 1.68312 1.15764 1.05271 1.20825 0.77599 0.88128 0.84410 1.90687 1.47560 1.19397 1.83511 1.20162 0.82790 0.88957 0.83905 1.91207 1.37278 1.15447 1.81068 1.42999 1.69432 1.11870 1.04456 1.18550 0.94104 0.89901 0.84407 1.20518 1.25306 0.99974 0.91688 1.20585 0.95520 0.93307 0.96607 1.21649 1.17133 0.96405 0.97234 1.18358 0.88274 0.92371 0.86355 1.19558 1.39249 0.94229 0.92462 0.89890 1.26157 0.95206 0.98535 0.97002 1.70293 1.24935 1.32236 1.00688 0.86546 0.79961 0.83303 0.77930 1.19146 1.20384 1.19142 1.68647 1.18674 0.98010 1.34069 0.92291 0.92347 0.92430 0.91106 0.91205 0.91547 0.91425 0.91015 0.91057 0.75051 0.75341 0.88734 0.88370 0.88388 0.91622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.12 37.16 0.34 -0.92 16 2 C -0.10 -0.95 3.16 -88.96 -0.28 -1.23 16 3 H 0.08 0.78 7.74 -51.93 -0.40 0.37 16 4 C -0.12 -0.90 6.33 -24.74 -0.16 -1.05 16 5 C -0.12 -1.04 6.83 -25.07 -0.17 -1.21 16 6 C -0.14 -1.44 6.59 -25.61 -0.17 -1.61 16 7 C 0.14 1.63 2.82 -66.81 -0.19 1.44 16 8 H 0.09 1.18 7.26 -51.93 -0.38 0.80 16 9 N -0.70 -9.76 4.98 -53.17 -0.26 -10.02 16 10 C 0.51 8.77 7.88 -11.63 -0.09 8.68 16 11 O -0.53 -9.76 16.14 5.49 0.09 -9.68 16 12 C 0.47 9.65 7.84 -11.63 -0.09 9.56 16 13 O -0.39 -9.21 12.24 5.49 0.07 -9.14 16 14 N -0.64 -13.40 5.37 -11.83 -0.06 -13.47 16 15 C 0.37 9.06 7.42 -155.09 -1.15 7.91 16 16 C -0.35 -7.91 9.96 -38.88 -0.39 -8.30 16 17 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 18 C -0.30 -7.48 9.83 -38.65 -0.38 -7.86 16 19 C 0.27 7.51 6.55 -85.00 -0.56 6.95 16 20 C -0.42 -11.42 9.14 -37.73 -0.34 -11.77 16 21 H 0.08 2.08 7.85 -52.48 -0.41 1.67 16 22 C 0.06 1.53 5.50 -17.35 -0.10 1.43 16 23 N -0.66 -17.59 8.99 55.55 0.50 -17.09 16 24 Si 0.90 18.69 29.56 -169.99 -5.02 13.67 16 25 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 26 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 27 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 28 N -0.47 -13.14 5.73 -10.28 -0.06 -13.20 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.47 8.12 -51.93 -0.42 0.04 16 32 H 0.07 0.50 8.04 -51.93 -0.42 0.08 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.86 7.92 -51.93 -0.41 0.45 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.41 5.62 7.83 -40.82 -0.32 5.31 16 39 H 0.41 7.41 8.18 -40.82 -0.33 7.08 16 40 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 41 H 0.10 1.87 8.06 -52.48 -0.42 1.45 16 42 H 0.10 2.25 8.06 -52.49 -0.42 1.82 16 43 H 0.27 6.69 8.29 -40.82 -0.34 6.35 16 LS Contribution 357.68 15.07 5.39 5.39 Total: -1.00 -31.03 357.68 -9.52 -40.56 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -6.03 Total: 12.16 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -4.13 Total: 0.81 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: 0.11 Total: -53.78 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: 0.16 Total: -18.81 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.02 Total: 13.67 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.03 -9.52 -40.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889904004.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.948 kcal (2) G-P(sol) polarization free energy of solvation -31.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds