Wall clock time and date at job start Tue Mar 31 2020 12:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 110.53857 * 2 1 4 4 C 1.54893 * 110.48766 * 237.38369 * 2 1 3 5 5 C 1.54886 * 102.74866 * 203.38240 * 4 2 1 6 6 C 1.54271 * 104.19744 * 37.94185 * 5 4 2 7 7 C 1.53878 * 106.59646 * 336.39094 * 6 5 4 8 8 H 1.09001 * 110.06958 * 119.31179 * 7 6 5 9 9 N 1.46505 * 110.02938 * 240.71331 * 7 6 5 10 10 C 1.34772 * 120.00198 * 272.16436 * 9 7 6 11 11 O 1.21358 * 119.99917 * 0.02562 * 10 9 7 12 12 C 1.49366 * 120.00286 * 180.02562 * 10 9 7 13 13 O 1.21358 * 119.99797 * 0.02562 * 12 10 9 14 14 N 1.34772 * 120.00286 * 179.97438 * 12 10 9 15 15 C 1.39109 * 120.00153 * 185.15031 * 14 12 10 16 16 C 1.39708 * 119.57781 * 174.66942 * 15 14 12 17 17 C 1.38660 * 119.49262 * 180.02562 * 16 15 14 18 18 C 1.38341 * 118.67020 * 359.97438 * 17 16 15 19 19 C 1.40597 * 119.13933 * 0.02562 * 18 17 16 20 20 C 1.41334 * 119.78833 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99813 * 359.97438 * 20 19 18 22 22 C 1.40031 * 120.00190 * 179.97438 * 20 19 18 23 23 N 1.30737 * 119.99889 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00184 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47234 * 59.99580 * 24 22 20 26 26 H 1.48498 * 109.47459 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47101 * 300.00174 * 24 22 20 28 28 N 1.31936 * 119.58009 * 354.66879 * 15 14 12 29 29 H 1.08999 * 109.47296 * 297.39399 * 1 2 3 30 30 H 1.08999 * 109.47064 * 57.39126 * 1 2 3 31 31 H 1.08998 * 109.46784 * 177.39212 * 1 2 3 32 32 H 1.09000 * 110.75372 * 321.69708 * 4 2 1 33 33 H 1.08992 * 110.75417 * 85.06517 * 4 2 1 34 34 H 1.08995 * 110.48534 * 156.61924 * 5 4 2 35 35 H 1.09001 * 110.48397 * 279.13628 * 5 4 2 36 36 H 1.08999 * 110.02963 * 217.10580 * 6 5 4 37 37 H 1.08998 * 110.03275 * 95.67372 * 6 5 4 38 38 H 0.96997 * 119.99720 * 92.17582 * 9 7 6 39 39 H 0.96998 * 119.99964 * 5.16122 * 14 12 10 40 40 H 1.08001 * 120.25630 * 0.02562 * 16 15 14 41 41 H 1.08003 * 120.66379 * 180.27703 * 17 16 15 42 42 H 1.08000 * 120.43120 * 179.97438 * 18 17 16 43 43 H 0.97002 * 120.00408 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9125 1.0207 0.0000 4 6 2.0722 -0.7821 -1.2221 5 6 3.4907 -1.1981 -0.7599 6 6 3.3165 -1.5406 0.7342 7 6 2.0699 -0.7788 1.2173 8 1 1.3173 -1.4816 1.5748 9 7 2.4345 0.1528 2.2876 10 6 2.4431 -0.2635 3.5694 11 8 2.1492 -1.4101 3.8370 12 6 2.8143 0.6864 4.6607 13 8 3.1077 1.8332 4.3932 14 7 2.8224 0.2703 5.9426 15 6 3.0630 1.1795 6.9675 16 6 2.9592 0.7633 8.2971 17 6 3.1989 1.6712 9.3174 18 6 3.5365 2.9706 8.9837 19 6 3.6249 3.3281 7.6269 20 6 3.9682 4.6520 7.2705 21 1 4.1612 5.3854 8.0395 22 6 4.0581 5.0128 5.9205 23 7 3.8249 4.1249 4.9896 24 14 4.5111 6.7628 5.4495 25 1 5.8509 7.0922 5.9989 26 1 4.5395 6.8857 3.9699 27 1 3.5037 7.7016 6.0055 28 7 3.3864 2.4240 6.6716 29 1 -0.3634 0.4728 0.9124 30 1 -0.3633 0.5538 -0.8657 31 1 -0.3633 -1.0266 -0.0468 32 1 1.4581 -1.6601 -1.4222 33 1 2.1252 -0.1383 -2.1000 34 1 3.8316 -2.0723 -1.3144 35 1 4.1903 -0.3715 -0.8847 36 1 4.1928 -1.2171 1.2960 37 1 3.1692 -2.6136 0.8566 38 1 2.6696 1.0692 2.0737 39 1 2.6606 -0.6632 6.1505 40 1 2.6942 -0.2579 8.5286 41 1 3.1283 1.3686 10.3518 42 1 3.7288 3.7012 9.7556 43 1 3.8875 4.3747 4.0544 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889904004.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:35 Heat of formation + Delta-G solvation = -43.441993 kcal Electronic energy + Delta-G solvation = -26485.823719 eV Core-core repulsion = 22723.479869 eV Total energy + Delta-G solvation = -3762.343850 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.80752 -40.54872 -39.38599 -38.63967 -36.20702 -35.11142 -34.49517 -32.27538 -32.23618 -31.09091 -29.05215 -27.61987 -26.41298 -25.28152 -23.50959 -22.87682 -21.79541 -21.13034 -20.76328 -19.83433 -18.78984 -18.26029 -17.58016 -16.94103 -16.67076 -16.46302 -16.29488 -15.95821 -15.63513 -15.22870 -15.02853 -14.80888 -14.67934 -14.47545 -14.07142 -13.88872 -13.77245 -13.15834 -12.87349 -12.75776 -12.75179 -12.64734 -12.58587 -12.34236 -12.25149 -11.96680 -11.78568 -11.64170 -11.59861 -11.58452 -11.45748 -10.91754 -10.60318 -10.22633 -9.94203 -9.20315 -8.92805 -8.08865 -6.43314 0.37297 1.03129 1.26860 1.41161 1.42445 1.53127 1.56125 2.27558 2.37569 2.68292 2.97907 3.42642 3.55909 3.64141 3.87559 4.01006 4.25552 4.32202 4.42612 4.46553 4.55578 4.56345 4.66682 4.68384 4.81146 4.91497 4.93673 4.94371 4.96851 4.98795 5.10695 5.20276 5.25871 5.25925 5.29938 5.43508 5.49695 5.62979 5.70953 5.89181 6.00053 6.16211 6.29304 6.54292 6.71967 6.85889 7.03269 7.28814 8.24584 8.55227 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013531 B = 0.003862 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.845146 B = 7248.238394 C = 8805.996415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.101 4.101 3 H 0.082 0.918 4 C -0.110 4.110 5 C -0.120 4.120 6 C -0.136 4.136 7 C 0.138 3.862 8 H 0.085 0.915 9 N -0.684 5.684 10 C 0.518 3.482 11 O -0.546 6.546 12 C 0.459 3.541 13 O -0.420 6.420 14 N -0.634 5.634 15 C 0.347 3.653 16 C -0.343 4.343 17 C -0.033 4.033 18 C -0.322 4.322 19 C 0.237 3.763 20 C -0.462 4.462 21 H 0.088 0.912 22 C 0.015 3.985 23 N -0.694 5.694 24 Si 0.976 3.024 25 H -0.262 1.262 26 H -0.271 1.271 27 H -0.262 1.262 28 N -0.506 5.506 29 H 0.040 0.960 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.073 0.927 38 H 0.415 0.585 39 H 0.424 0.576 40 H 0.129 0.871 41 H 0.140 0.860 42 H 0.109 0.891 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.414 -8.604 -13.581 16.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.120 4.120 3 H 0.101 0.899 4 C -0.147 4.147 5 C -0.157 4.157 6 C -0.175 4.175 7 C 0.034 3.966 8 H 0.103 0.897 9 N -0.336 5.336 10 C 0.299 3.701 11 O -0.424 6.424 12 C 0.237 3.763 13 O -0.285 6.285 14 N -0.283 5.283 15 C 0.109 3.891 16 C -0.369 4.369 17 C -0.057 4.057 18 C -0.345 4.345 19 C 0.111 3.889 20 C -0.493 4.493 21 H 0.106 0.894 22 C -0.211 4.211 23 N -0.314 5.314 24 Si 0.797 3.203 25 H -0.187 1.187 26 H -0.195 1.195 27 H -0.187 1.187 28 N -0.226 5.226 29 H 0.059 0.941 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.252 0.748 39 H 0.262 0.738 40 H 0.147 0.853 41 H 0.157 0.843 42 H 0.127 0.873 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.378 -8.349 -14.797 17.322 hybrid contribution 0.211 0.373 1.171 1.247 sum -3.168 -7.976 -13.626 16.103 Atomic orbital electron populations 1.21801 0.93821 1.02535 1.01921 1.22283 0.96567 0.99678 0.93438 0.89922 1.22531 0.95505 1.00185 0.96517 1.22342 0.97711 1.01928 0.93755 1.22580 0.96797 1.00513 0.97611 1.22077 0.97224 0.91147 0.86143 0.89725 1.45983 1.66651 1.16291 1.04675 1.20131 0.78145 0.87202 0.84639 1.90681 1.48700 1.19354 1.83694 1.20798 0.81788 0.89216 0.84505 1.91202 1.38589 1.17043 1.81648 1.42996 1.69052 1.12049 1.04227 1.19008 0.94101 0.89836 0.86172 1.20963 1.23375 1.01617 0.90910 1.21047 0.93711 0.92242 0.98715 1.21853 1.18108 0.98002 0.96555 1.18858 0.89102 0.93118 0.87774 1.19905 1.41079 0.94656 0.93652 0.89422 1.26989 0.94748 1.02940 0.96424 1.70450 1.25715 1.34324 1.00877 0.85364 0.79607 0.77539 0.77779 1.18661 1.19520 1.18653 1.68602 1.19792 0.99264 1.34947 0.94058 0.90842 0.91740 0.90055 0.89636 0.90050 0.91482 0.92812 0.90793 0.74816 0.73813 0.85306 0.84273 0.87320 0.91515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.12 71.98 0.66 -1.62 16 2 C -0.10 -1.68 3.16 -9.72 -0.03 -1.71 16 3 H 0.08 1.42 7.74 -2.39 -0.02 1.40 16 4 C -0.11 -1.37 6.33 31.89 0.20 -1.17 16 5 C -0.12 -1.74 6.83 31.67 0.22 -1.52 16 6 C -0.14 -2.74 6.59 31.32 0.21 -2.53 16 7 C 0.14 3.04 2.82 45.72 0.13 3.17 16 8 H 0.08 2.06 7.26 -2.39 -0.02 2.05 16 9 N -0.68 -19.18 4.98 -440.51 -2.19 -21.38 16 10 C 0.52 18.05 7.88 87.24 0.69 18.74 16 11 O -0.55 -19.84 16.14 -3.27 -0.05 -19.89 16 12 C 0.46 19.50 7.84 87.24 0.68 20.19 16 13 O -0.42 -20.74 12.24 -3.27 -0.04 -20.78 16 14 N -0.63 -26.81 5.37 -309.71 -1.66 -28.47 16 15 C 0.35 17.20 7.42 133.30 0.99 18.19 16 16 C -0.34 -15.09 9.96 22.73 0.23 -14.86 16 17 C -0.03 -1.44 10.15 22.40 0.23 -1.22 16 18 C -0.32 -16.10 9.83 22.87 0.22 -15.88 16 19 C 0.24 13.49 6.55 40.20 0.26 13.75 16 20 C -0.46 -25.69 9.14 23.47 0.21 -25.47 16 21 H 0.09 4.55 7.85 -2.91 -0.02 4.52 16 22 C 0.01 0.76 5.50 85.29 0.47 1.23 16 23 N -0.69 -38.12 8.99 21.84 0.20 -37.92 16 24 Si 0.98 39.11 29.56 68.60 2.03 41.14 16 25 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 26 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 27 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 28 N -0.51 -28.84 5.73 -186.43 -1.07 -29.90 16 29 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 0.93 8.12 -2.39 -0.02 0.91 16 32 H 0.08 0.89 8.04 -2.39 -0.02 0.87 16 33 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.05 1.28 7.92 -2.39 -0.02 1.26 16 37 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.41 11.50 7.83 -92.71 -0.73 10.78 16 39 H 0.42 15.14 8.18 -92.71 -0.76 14.38 16 40 H 0.13 4.69 8.06 -2.91 -0.02 4.67 16 41 H 0.14 4.84 8.06 -2.91 -0.02 4.82 16 42 H 0.11 5.01 8.06 -2.91 -0.02 4.99 16 43 H 0.27 13.91 8.29 -92.71 -0.77 13.15 16 Total: -1.00 -68.99 357.68 2.14 -66.85 By element: Atomic # 1 Polarization: 41.51 SS G_CDS: -0.43 Total: 41.07 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 5.37 Total: 9.29 kcal Atomic # 7 Polarization: -112.95 SS G_CDS: -4.73 Total: -117.68 kcal Atomic # 8 Polarization: -40.58 SS G_CDS: -0.09 Total: -40.68 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.14 kcal Total: -68.99 2.14 -66.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889904004.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.411 kcal (2) G-P(sol) polarization free energy of solvation -68.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds